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ONTOLOGY REPORT - ANNOTATIONS


Term:response to antibiotic
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Accession:GO:0046677 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
Synonyms:related_synonym: antibiotic susceptibility/resistance



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response to antibiotic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, biomineralization associated acts_upstream_of_or_within ISO (MGI:60012|PMID:2133555) RGD PMID:2133555 MGI:60012 NCBI chr 5:149,951,397...150,006,424
Ensembl chr 5:149,951,409...150,006,446
JBrowse link
G Aoc1 amine oxidase, copper containing 1 involved_in IDA
ISO
IBA
PMID:7626074
(PMID:7626074)
(PMID:19764817), (PMID:7626074)
PMID:21873635
RGD PMID:7626074 PMID:19764817 PMID:7626074 PMID:21873635 RGD:8554393, RGD:13792537 NCBI chr 4:77,812,260...77,831,846
Ensembl chr 4:77,812,260...77,831,840
JBrowse link
G Aoc3 amine oxidase, copper containing 3 involved_in IBA
ISO
PMID:21873635
(PMID:19764817)
RGD PMID:19764817 PMID:21873635 RGD:13792537 NCBI chr10:86,272,757...86,280,702 JBrowse link
G Ciita class II, major histocompatibility complex, transactivator acts_upstream_of_or_within ISO (PMID:107465) RGD PMID:107465 NCBI chr10:5,139,947...5,187,493
Ensembl chr10:5,140,178...5,187,440
JBrowse link
G Cyb5r4 cytochrome b5 reductase 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3050973 (MGI:3715661|PMID:17343567)
Ensembl
RGD
PMID:17343567 GO_REF:0000107 MGI:3715661 NCBI chr 8:87,975,596...88,048,356
Ensembl chr 8:87,981,116...88,045,832
JBrowse link
G Doxl1 diamine oxidase-like protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:77,879,428...77,883,044
Ensembl chr 4:77,879,410...77,883,044
JBrowse link
G Doxl2 diamine oxidase-like protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:77,934,551...77,938,333
Ensembl chr 4:77,934,545...77,938,331
JBrowse link
G Endog endonuclease G acts_upstream_of_or_within ISO MGI:3034030|MGI:3514265 (MGI:3029597|PMID:14663139) RGD PMID:14663139 MGI:3029597 NCBI chr 3:13,449,113...13,451,715
Ensembl chr 3:13,449,086...13,451,932
JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor involved_in ISO (PMID:9266972) RGD PMID:9266972 NCBI chr 8:31,045,909...31,168,010
Ensembl chr 8:31,045,945...31,168,010
JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 6:129,702,376...129,707,907
Ensembl chr 6:129,702,383...129,707,268
JBrowse link
G Hyal1 hyaluronidase 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:11944887)
UniProt
RGD
PMID:11944887 GO_REF:0000024 NCBI chr 8:108,250,654...108,254,526
Ensembl chr 8:108,250,667...108,260,210
JBrowse link
G Hyal2 hyaluronidase 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:11944887)
Ensembl
RGD
PMID:11944887 GO_REF:0000107 NCBI chr 8:108,241,895...108,246,853
Ensembl chr 8:108,243,133...108,246,850
JBrowse link
G Hyal3 hyaluronidase 3 involved_in ISO (PMID:11944887) RGD PMID:11944887 NCBI chr 8:108,254,385...108,260,020
Ensembl chr 8:108,250,667...108,260,647
JBrowse link
G Id1 inhibitor of DNA binding 1 acts_upstream_of_or_within ISO MGI:2679939 (MGI:3759000|PMID:17717145) RGD PMID:17717145 MGI:3759000 NCBI chr 3:141,210,666...141,212,420
Ensembl chr 3:141,211,267...141,212,419
JBrowse link
G Jak1 Janus kinase 1 acts_upstream_of_or_within ISO (PMID:16280321) RGD PMID:16280321 NCBI chr 5:115,780,248...115,888,841
Ensembl chr 5:115,780,248...115,888,926
JBrowse link
G Jak2 Janus kinase 2 acts_upstream_of_or_within ISO (PMID:16280321) RGD PMID:16280321 NCBI chr 1:226,995,334...227,054,381
Ensembl chr 1:226,995,334...227,054,189
JBrowse link
G Mdm2 MDM2 proto-oncogene involved_in ISO (PMID:20810912) RGD PMID:20810912 NCBI chr 7:53,290,660...53,315,205
Ensembl chr 7:53,290,664...53,314,915
JBrowse link
G Ppp2cb protein phosphatase 2 catalytic subunit beta acts_upstream_of_or_within ISO (MGI:3694309|PMID:16717086) RGD PMID:16717086 MGI:3694309 NCBI chr16:58,558,119...58,579,325
Ensembl chr16:58,558,122...58,579,576
JBrowse link
G Rsrc1 arginine and serine rich coiled-coil 1 acts_upstream_of_or_within ISO (MGI:3575934|PMID:15798186) RGD PMID:15798186 MGI:3575934 NCBI chr 2:151,226,821...151,632,771
Ensembl chr 2:151,231,156...151,632,765
JBrowse link
G Skil SKI-like proto-oncogene involved_in ISO (PMID:15967445) RGD PMID:15967445 NCBI chr 2:112,247,047...112,275,176
Ensembl chr 2:112,247,051...112,275,080
JBrowse link
G Slc1a3 solute carrier family 1 member 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1931872 (MGI:3583497|PMID:15862894)
Ensembl
RGD
PMID:15862894 GO_REF:0000107 MGI:3583497 NCBI chr 2:57,755,495...57,830,605
Ensembl chr 2:57,755,497...57,830,605
JBrowse link
G Svs1 seminal vesicle secretory protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:77,955,478...77,960,376
Ensembl chr 4:77,955,478...77,960,376
JBrowse link
G Tp53 tumor protein p53 involved_in ISO (PMID:20810912) RGD PMID:20810912 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Vps54 VPS54 subunit of GARP complex involved_in IEA
ISO
GO_REF:0000107
MGI:1857091 (MGI:6430941|PMID:32345721)
Ensembl
RGD
PMID:32345721 GO_REF:0000107 MGI:6430941 NCBI chr14:95,378,821...95,455,871
Ensembl chr14:95,378,012...95,455,857
JBrowse link
G Zc3h8 zinc finger CCCH type containing 8 involved_in ISO (PMID:12153508) RGD PMID:12153508 NCBI chr 3:116,176,779...116,193,752
Ensembl chr 3:116,176,798...116,193,787
JBrowse link
cellular response to actinomycin D term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gfer growth factor, augmenter of liver regeneration IEP RGD PMID:23073658 RGD:9685733 NCBI chr10:13,718,489...13,721,782
Ensembl chr10:13,718,489...13,720,869
JBrowse link
G Mdm2 MDM2 proto-oncogene involved_in ISO (PMID:15314173) RGD PMID:15314173 NCBI chr 7:53,290,660...53,315,205
Ensembl chr 7:53,290,664...53,314,915
JBrowse link
G Rpl23 ribosomal protein L23 involved_in ISO (PMID:15314173) RGD PMID:15314173 NCBI chr10:82,771,878...82,775,840
Ensembl chr10:82,771,538...82,775,870
JBrowse link
G Tp53 tumor protein p53 involved_in ISO (PMID:15314173) RGD PMID:15314173 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
cellular response to antibiotic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP binding cassette subfamily B member 1A IEP puromycin RGD PMID:14675146 RGD:8657126 NCBI chr 4:25,357,467...25,529,941
Ensembl chr 4:25,158,362...25,442,709
JBrowse link
G Atp7a ATPase copper transporting alpha IEP mithramycin RGD PMID:23814049 RGD:11341692 NCBI chr  X:71,094,144...71,201,550
Ensembl chr  X:71,094,202...71,198,354
JBrowse link
G Cdkn1b cyclin-dependent kinase inhibitor 1B acts_upstream_of_or_within ISO (MGI:3820325|PMID:19056892) RGD PMID:19056892 MGI:3820325 NCBI chr 4:167,760,067...167,765,177
Ensembl chr 4:167,760,181...167,764,982
JBrowse link
G Crip1 cysteine rich protein 1 involved_in ISO
ISS
(PMID:20415737) RGD PMID:20415737 PMID:20415737 RGD:8553326 NCBI chr 6:132,226,746...132,234,620
Ensembl chr 6:132,226,746...132,234,620
JBrowse link
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 IEP Triclosan RGD PMID:18655822 RGD:4777466 NCBI chr 8:58,422,807...58,434,342
Ensembl chr 8:58,404,669...58,434,338
JBrowse link
G Cyp17a1 cytochrome P450, family 17, subfamily a, polypeptide 1 IEP Triclosan RGD PMID:18655822 RGD:4777466 NCBI chr 1:245,535,462...245,543,148
Ensembl chr 1:245,535,462...245,541,573
JBrowse link
G Egr1 early growth response 1 IEP trichostatin A RGD PMID:21490970 RGD:5131646 NCBI chr18:26,463,333...26,465,531
Ensembl chr18:26,462,981...26,466,766
JBrowse link
G Ep300 E1A binding protein p300 IEP doxorubicin RGD PMID:22562121 RGD:7327216 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088
JBrowse link
G Hmbs hydroxymethylbilane synthase IEP ascofuranone RGD PMID:19688726 RGD:4144778 NCBI chr 8:44,673,554...44,680,950
Ensembl chr 8:44,673,554...44,680,957
JBrowse link
G Hsd17b3 hydroxysteroid (17-beta) dehydrogenase 3 IEP Triclosan RGD PMID:18655822 RGD:4777466 NCBI chr17:1,027,229...1,058,554
Ensembl chr17:1,027,229...1,058,554
JBrowse link
G Hsd3b1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 IEP Triclosan RGD PMID:18655822 RGD:4777466 NCBI chr 2:186,169,864...186,175,984
Ensembl chr 2:186,169,863...186,175,999
JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 IEP tunicamycin RGD PMID:19332540 RGD:7242708 NCBI chr 3:18,055,507...18,059,969
Ensembl chr 3:18,055,405...18,059,891
JBrowse link
G Il10 interleukin 10 ISO tulathromycin in virus-infected macrophages RGD PMID:31442273 RGD:150540302 NCBI chr13:42,472,625...42,477,308
Ensembl chr13:42,472,839...42,477,313
JBrowse link
G Il1b interleukin 1 beta IEP tigecycline RGD PMID:23200736 RGD:7175528 NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415
JBrowse link
G Mdm2 MDM2 proto-oncogene IEP chemotherapeutic anthracycline Adriamycin; novel Mdm2 splice variant RGD PMID:18469520 RGD:2317371 NCBI chr 7:53,290,660...53,315,205
Ensembl chr 7:53,290,664...53,314,915
JBrowse link
G Pla2g4a phospholipase A2 group IVA acts_upstream_of_or_within ISO (MGI:3709446|PMID:17293613) RGD PMID:17293613 MGI:3709446 NCBI chr13:61,877,818...62,022,261
Ensembl chr13:61,877,813...62,022,266
JBrowse link
G Pla2g4f phospholipase A2, group IVF acts_upstream_of_or_within ISO (MGI:3709446|PMID:17293613) RGD PMID:17293613 MGI:3709446 NCBI chr 3:107,249,053...107,266,201
Ensembl chr 3:107,250,075...107,264,689
JBrowse link
G Ppp1r15a protein phosphatase 1, regulatory subunit 15A IEP tunicamycin RGD PMID:21925170 RGD:9999170 NCBI chr 1:96,000,053...96,003,128
Ensembl chr 1:96,000,058...96,003,171
JBrowse link
G Rab10 RAB10, member RAS oncogene family IEP brefeldin A RGD PMID:7688123 RGD:734514 NCBI chr 6:26,267,081...26,319,739
Ensembl chr 6:26,266,859...26,320,193
JBrowse link
G Rasgrf1 RAS protein-specific guanine nucleotide-releasing factor 1 IEP RGD PMID:19002579 RGD:10003129 NCBI chr 8:90,445,154...90,574,274
Ensembl chr 8:90,445,154...90,574,269
JBrowse link
G Scn3a sodium voltage-gated channel alpha subunit 3 IDA tunicamycin RGD PMID:18839021 RGD:2317318 NCBI chr 3:50,146,411...50,258,119
Ensembl chr 3:50,148,139...50,258,119
JBrowse link
G Sirt1 sirtuin 1 IEP ionomycin RGD PMID:17581637 RGD:2290573 NCBI chr20:25,307,143...25,329,260
Ensembl chr20:25,306,917...25,329,260
JBrowse link
G Slc9a1 solute carrier family 9 member A1 IEP oligomycin RGD PMID:20868366 RGD:7349316 NCBI chr 5:145,576,341...145,629,630
Ensembl chr 5:145,576,334...145,629,624
JBrowse link
G Star steroidogenic acute regulatory protein IEP Triclosan RGD PMID:18655822 RGD:4777466 NCBI chr16:66,267,094...66,274,368
Ensembl chr16:66,264,807...66,271,672
JBrowse link
G Txn1 thioredoxin 1 IEP minocycline RGD PMID:21184825 RGD:5133706 NCBI chr 5:72,712,334...72,724,564
Ensembl chr 5:72,711,933...72,724,629
JBrowse link
G Xbp1 X-box binding protein 1 IEP tunicamycin RGD PMID:19332540 RGD:7242708 NCBI chr14:80,390,629...80,395,713
Ensembl chr14:80,390,643...80,395,693
JBrowse link
cellular response to trichostatin A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr2 actin related protein 2 IEP RGD PMID:12445420 RGD:632492 NCBI chr14:94,296,443...94,333,735
Ensembl chr14:94,296,443...94,340,524
JBrowse link
G Actr3 actin related protein 3 IEP RGD PMID:12445420 RGD:632492 NCBI chr13:36,800,739...36,843,837
Ensembl chr13:36,800,093...36,844,124
JBrowse link
G Ep300 E1A binding protein p300 IEP RGD PMID:20094059 RGD:7364756 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO (MGI:5576864|PMID:24137001) RGD PMID:24137001 MGI:5576864 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362
JBrowse link
G Hdac2 histone deacetylase 2 acts_upstream_of_or_within ISO (MGI:5576864|PMID:24137001) RGD PMID:24137001 MGI:5576864 NCBI chr20:40,548,250...40,571,609
Ensembl chr20:40,548,250...40,571,609
JBrowse link
G Hdac8 histone deacetylase 8 IDA RGD PMID:26391271 RGD:11344521 NCBI chr  X:67,385,288...67,593,014
Ensembl chr  X:67,385,289...67,592,923
JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO
GO_REF:0000024
(MGI:4440396|PMID:20181743)
UniProt
RGD
PMID:20181743 GO_REF:0000024 MGI:4440396 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Mir208b microRNA 208b acts_upstream_of_or_within ISO (MGI:5576864|PMID:24137001) RGD PMID:24137001 MGI:5576864 NCBI chr15:28,451,638...28,451,749
Ensembl chr15:28,451,638...28,451,749
JBrowse link
response to actinomycin D term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kat7 lysine acetyltransferase 7 involved_in ISO (PMID:21856198) RGD PMID:21856198 NCBI chr10:80,221,519...80,255,590
Ensembl chr10:80,221,524...80,255,567
JBrowse link
response to fungicide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 IEP vinclozolin RGD PMID:14967917 RGD:4891062 NCBI chr 8:58,422,807...58,434,342
Ensembl chr 8:58,404,669...58,434,338
JBrowse link
G Cyp17a1 cytochrome P450, family 17, subfamily a, polypeptide 1 IEP prochloraz
procymidone
RGD PMID:17369198 PMID:16214947 RGD:4889131, RGD:4889136 NCBI chr 1:245,535,462...245,543,148
Ensembl chr 1:245,535,462...245,541,573
JBrowse link
G Ehmt1 euchromatic histone lysine methyltransferase 1 IEP RGD PMID:22496781 RGD:9588300 NCBI chr 3:7,580,680...7,729,046
Ensembl chr 3:7,580,683...7,729,007
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 IEP RGD PMID:22496781 RGD:9588300 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547
JBrowse link
G Gria1 glutamate ionotropic receptor AMPA type subunit 1 IEP tributyltin RGD PMID:19591855 RGD:2325972 NCBI chr10:41,210,713...41,527,283
Ensembl chr10:41,210,713...41,527,283
JBrowse link
G Gria2 glutamate ionotropic receptor AMPA type subunit 2 IEP tributyltin RGD PMID:19591855 RGD:2325972 NCBI chr 2:165,949,379...166,069,510
Ensembl chr 2:165,947,521...166,069,510
JBrowse link
G Gria3 glutamate ionotropic receptor AMPA type subunit 3 IEP tributyltin RGD PMID:19591855 RGD:2325972 NCBI chr  X:120,238,515...120,504,106
Ensembl chr  X:120,238,534...120,504,096
JBrowse link
G Gria4 glutamate ionotropic receptor AMPA type subunit 4 IEP tributyltin RGD PMID:19591855 RGD:2325972 NCBI chr 8:1,562,118...2,035,035
Ensembl chr 8:1,562,119...2,034,979
JBrowse link
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 IEP tributyltin RGD PMID:19591855 RGD:2325972 NCBI chr 3:8,103,680...8,130,603
Ensembl chr 3:8,103,680...8,130,603
JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A IEP tributyltin RGD PMID:19591855 RGD:2325972 NCBI chr10:5,630,684...6,043,341
Ensembl chr10:5,631,369...6,044,637
JBrowse link
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B IEP tributyltin RGD PMID:19591855 RGD:2325972 NCBI chr 4:168,580,824...169,044,110
Ensembl chr 4:168,599,546...169,042,279
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha IMP econazole RGD PMID:18347136 RGD:9068920 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Hsd17b3 hydroxysteroid (17-beta) dehydrogenase 3 IEP carbendazim RGD PMID:17485193 RGD:4890971 NCBI chr17:1,027,229...1,058,554
Ensembl chr17:1,027,229...1,058,554
JBrowse link
G Hsd3b1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 IEP carbendazim RGD PMID:17485193 RGD:4890971 NCBI chr 2:186,169,864...186,175,984
Ensembl chr 2:186,169,863...186,175,999
JBrowse link
G Kdm1a lysine demethylase 1A IEP vinclozolin RGD PMID:22496781 RGD:9588300 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319
JBrowse link
G Kdm5b lysine demethylase 5B IEP vinclozolin RGD PMID:22496781 RGD:9588300 NCBI chr13:46,001,589...46,073,868
Ensembl chr13:46,002,542...46,073,872
JBrowse link
G Kdm6b lysine demethylase 6B IEP vinclozolin RGD PMID:22496781 RGD:9588300 NCBI chr10:54,120,716...54,142,212
Ensembl chr10:54,121,848...54,130,794
JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 IEP trichostatin A RGD PMID:19728174 RGD:4891525 NCBI chr 1:33,686,069...33,720,468
Ensembl chr 1:33,686,391...33,720,461
JBrowse link
G Star steroidogenic acute regulatory protein IEP procymidone RGD PMID:16214947 RGD:4889136 NCBI chr16:66,267,094...66,274,368
Ensembl chr16:66,264,807...66,271,672
JBrowse link
G Urod uroporphyrinogen decarboxylase IEP hexachlorobenzene RGD PMID:19482825 RGD:4144824 NCBI chr 5:130,464,695...130,468,783
Ensembl chr 5:130,455,217...130,468,808
JBrowse link
response to trichostatin A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf4a hepatocyte nuclear factor 4, alpha IDA RGD PMID:12205093 RGD:152995266 NCBI chr 3:152,186,787...152,248,320
Ensembl chr 3:152,186,787...152,248,320
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19746
    response to stimulus 10448
      response to chemical 6063
        response to antibiotic 76
          cellular response to antibiotic + 36
          exogenous antibiotic catabolic process 0
          response to actinomycin D + 5
          response to bacteriocin + 0
          response to brefeldin A + 0
          response to fungicide 20
          response to reverse transcriptase inhibitor 0
          response to streptomycin + 0
          response to trichostatin A + 9
paths to the root