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ONTOLOGY REPORT - ANNOTATIONS


Term:retinal cell programmed cell death
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Accession:GO:0046666 term browser browse the term
Definition:Programmed cell death that occurs in the developing retina.
Synonyms:exact_synonym: programmed cell death, retina cells;   programmed cell death, retinal cells;   retina cell programmed cell death;   retina programmed cell death;   retinal programmed cell death



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retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2677551|PMID:14517994) MGI
Ensembl
PMID:14517994 GO_REF:0000107 MGI:2677551 NCBI chr19:45,955,926...45,962,870
Ensembl chr19:54,793,594...54,800,468
JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of
involved_in
ISO
IEA
(MGI:1336407|PMID:10321489) MGI
Ensembl
PMID:10321489 GO_REF:0000107 MGI:1336407 NCBI chr18:56,481,212...56,679,012
Ensembl chr18:59,802,443...59,992,100
JBrowse link
G BHLHE23 basic helix-loop-helix family member e23 acts_upstream_of ISO (MGI:3054140|PMID:15363390) MGI PMID:15363390 MGI:3054140 NCBI chr20:59,385,608...59,392,078 JBrowse link
G FASLG Fas ligand acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2677551|PMID:14517994) MGI
Ensembl
PMID:14517994 GO_REF:0000107 MGI:2677551 NCBI chr 1:148,159,826...148,167,785
Ensembl chr 1:151,868,430...151,876,281
JBrowse link
G SLC4A7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chr 3:27,261,155...27,373,223
Ensembl chr 3:27,591,639...27,670,815
JBrowse link
negative regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1336407|PMID:10321489) MGI
Ensembl
PMID:10321489 GO_REF:0000107 MGI:1336407 NCBI chr18:56,481,212...56,679,012
Ensembl chr18:59,802,443...59,992,100
JBrowse link
G BHLHE23 basic helix-loop-helix family member e23 acts_upstream_of_or_within ISO (MGI:3054140|PMID:15363390) MGI PMID:15363390 MGI:3054140 NCBI chr20:59,385,608...59,392,078 JBrowse link
G TMEM215 transmembrane protein 215 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:6507628|PMID:30370660) MGI
Ensembl
PMID:30370660 GO_REF:0000107 MGI:6507628 NCBI chr 9:32,557,141...32,563,166
Ensembl chr 9:33,369,459...33,370,166
JBrowse link
positive regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASP6 caspase 6 ISO RGD PMID:12917395 RGD:2301324 NCBI chr 4:102,186,215...102,201,992
Ensembl chr 4:112,753,988...112,768,836
JBrowse link
regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BDNF brain derived neurotrophic factor acts_upstream_of_or_within ISO (MGI:2155023|PMID:11747369) MGI PMID:11747369 MGI:2155023 NCBI chr11:27,618,322...27,687,661
Ensembl chr11:27,520,312...27,589,239
JBrowse link
G CNTF ciliary neurotrophic factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2155023|PMID:11747369) MGI
Ensembl
PMID:11747369 GO_REF:0000107 MGI:2155023 NCBI chr11:53,876,081...53,882,870
Ensembl chr11:57,336,792...57,341,121
JBrowse link
G FGF2 fibroblast growth factor 2 acts_upstream_of_or_within ISO (MGI:2155023|PMID:11747369) MGI PMID:11747369 MGI:2155023 NCBI chr 4:115,005,136...115,076,369
Ensembl chr 4:126,149,813...126,214,942
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16309
    cellular process 15385
      cellular developmental process 4391
        programmed cell death involved in cell development 32
          retinal cell programmed cell death 10
            compound eye retinal cell programmed cell death + 0
            negative regulation of retinal cell programmed cell death + 3
            positive regulation of retinal cell programmed cell death + 1
            regulation of retinal cell programmed cell death + 7
Path 2
Term Annotations click to browse term
  biological_process 16309
    developmental process 6535
      anatomical structure development 6144
        multicellular organism development 4947
          system development 4295
            sensory system development 472
              visual system development 468
                eye development 466
                  eye morphogenesis 186
                    retinal cell programmed cell death 10
                      compound eye retinal cell programmed cell death + 0
                      negative regulation of retinal cell programmed cell death + 3
                      positive regulation of retinal cell programmed cell death + 1
                      regulation of retinal cell programmed cell death + 7
paths to the root