Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:retinal cell programmed cell death
go back to main search page
Accession:GO:0046666 term browser browse the term
Definition:Programmed cell death that occurs in the developing retina.
Synonyms:exact_synonym: programmed cell death, retina cells;   programmed cell death, retinal cells;   retina cell programmed cell death;   retina programmed cell death;   retinal programmed cell death

show annotations for term's descendants           Sort by:
 
retinal cell programmed cell death term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator IEA
ISO		 GO_REF:0000107
MGI:1857429 (MGI:2677551|PMID:14517994)		 Ensembl
RGD		 PMID:14517994 GO_REF:0000107 MGI:2677551 NCBI chr 1:101,451,801...101,457,207
Ensembl chr 1:101,451,802...101,457,207 		JBrowse link
G Faslg Fas ligand ISO MGI:1856384 (MGI:2677551|PMID:14517994) RGD PMID:14517994 MGI:2677551 NCBI chr13:79,696,811...79,717,581
Ensembl chr13:79,698,445...79,705,705 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 ISO MGI:2682641 (MGI:2680888|PMID:12808454) RGD PMID:12808454 MGI:2680888 NCBI chr15:11,832,611...11,912,923
Ensembl chr15:11,836,286...11,912,916 		JBrowse link
negative regulation of retinal cell programmed cell death term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator IEA
ISO		 GO_REF:0000107
MGI:1857430 (MGI:1336407|PMID:10321489)		 Ensembl
RGD		 PMID:10321489 GO_REF:0000107 MGI:1336407 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374 		JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 ISO MGI:3054837 (MGI:3054140|PMID:15363390) RGD PMID:15363390 MGI:3054140 NCBI chr 3:176,279,997...176,282,211
Ensembl chr 3:176,279,997...176,282,211 		JBrowse link
positive regulation of retinal cell programmed cell death term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp6 caspase 6 IMP RGD PMID:12917395 RGD:2301324 NCBI chr 2:235,341,326...235,353,715
Ensembl chr 2:235,341,365...235,353,967
Ensembl chr 2:235,341,365...235,353,967 		JBrowse link
regulation of retinal cell programmed cell death term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor ISO (MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:2155023 NCBI chr 3:100,768,637...100,819,216
Ensembl chr 3:100,768,637...100,819,210 		JBrowse link
G Cntf ciliary neurotrophic factor IEA
ISO		 GO_REF:0000107
(MGI:2155023|PMID:11747369)		 Ensembl
RGD		 PMID:11747369 GO_REF:0000107 MGI:2155023 NCBI chr 1:229,599,009...229,601,032
Ensembl chr 1:229,599,009...229,601,032 		JBrowse link
G Fgf2 fibroblast growth factor 2 ISO (MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:2155023 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20045
    cellular process 18859
      cellular developmental process 4464
        programmed cell death involved in cell development 18
          retinal cell programmed cell death 9
            compound eye retinal cell programmed cell death + 0
            negative regulation of retinal cell programmed cell death + 2
            positive regulation of retinal cell programmed cell death + 1
            regulation of retinal cell programmed cell death + 6
Path 2
Term Annotations click to browse term
  biological_process 20045
    developmental process 6824
      anatomical structure development 6290
        multicellular organism development 5766
          system development 5298
            animal organ development 4055
              animal organ morphogenesis 1155
                sensory organ morphogenesis 322
                  eye morphogenesis 188
                    retinal cell programmed cell death 9
                      compound eye retinal cell programmed cell death + 0
                      negative regulation of retinal cell programmed cell death + 2
                      positive regulation of retinal cell programmed cell death + 1
                      regulation of retinal cell programmed cell death + 6
paths to the root