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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor cell differentiation
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Accession:GO:0046530 term browser browse the term
Definition:The specialization of organization of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light. An example of this process is found in Drosophila melanogaster.
Synonyms:alt_id: GO:0007467


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camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prom1 prominin 1 ISO (PMID:18654668)
(MGI:3838023|PMID:19228982)
BHF-UCL
UniProt
PMID:18654668, PMID:19228982 MGI:3838023 NCBI chrNW_004936477:11,878,261...12,017,228 JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:4437581|PMID:20300562) MGI PMID:20300562 MGI:4437581 NCBI chrNW_004936581:642,322...644,286 JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 ISO (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chrNW_004936655:682,132...928,886 JBrowse link
G Slc4a7 solute carrier family 4 member 7 ISO (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chrNW_004936473:18,550,489...18,645,470 JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 ISO (MGI:5014119|PMID:21646512) MGI PMID:21646512 MGI:5014119 NCBI chrNW_004936488:16,258,247...16,306,077 JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chrNW_004936569:1,474,693...1,480,562 JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chrNW_004936560:2,881,631...3,057,256 JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:2675211|PMID:12915475)
(MGI:4849309|PMID:21052544)
MGI PMID:12915475, PMID:21052544 MGI:2675211, MGI:4849309 NCBI chrNW_004936567:6,347,661...6,559,731 JBrowse link
G Fscn2 fascin actin-bundling protein 2, retinal ISO (MGI:3610644|PMID:16043865) MGI PMID:16043865 MGI:3610644 NCBI chrNW_004936594:5,184,133...5,195,340 JBrowse link
G Gabrr2 gamma-aminobutyric acid type A receptor subunit rho2 NOT ISO (MGI:2179933|PMID:12019334) MGI PMID:12019334 MGI:2179933 NCBI chrNW_004936510:2,891,136...2,949,428 JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chrNW_004936529:1,735,258...1,740,297 JBrowse link
G Gngt1 G protein subunit gamma transducin 1 ISO (MGI:3778702|PMID:18367617) MGI PMID:18367617 MGI:3778702 NCBI chrNW_004936803:67,933...71,508 JBrowse link
G Mfrp membrane frizzled-related protein ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936542:4,272,250...4,277,231 JBrowse link
G Nr2e3 nuclear receptor subfamily 2 group E member 3 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936471:31,229,322...31,236,093 JBrowse link
G Olfm3 olfactomedin 3 ISO RGD PMID:12019210 RGD:633402 NCBI chrNW_004936748:1,773,994...1,979,727 JBrowse link
G Pax6 paired box 6 ISO (MGI:2654287|PMID:12648492) MGI PMID:12648492 MGI:2654287 NCBI chrNW_004936533:5,952,529...5,980,889 JBrowse link
G Pdgfb platelet derived growth factor subunit B ISO (MGI:5607451|PMID:25224828) MGI PMID:25224828 MGI:5607451 NCBI chrNW_004936492:2,353,840...2,368,573 JBrowse link
G Prdm1 PR/SET domain 1 ISO (MGI:4454584|PMID:20463215) MGI PMID:20463215 MGI:4454584 NCBI chrNW_004936564:2,594,362...2,690,680 JBrowse link
G Prkci protein kinase C iota ISO (MGI:3607414|PMID:16267237) MGI PMID:16267237 MGI:3607414 NCBI chrNW_004936593:2,170,539...2,236,904 JBrowse link
G Rdh13 retinol dehydrogenase 13 ISO (MGI:5462166|PMID:22605914) MGI PMID:22605914 MGI:5462166 NCBI chrNW_004936886:356,068...368,525 JBrowse link
G Rorb RAR related orphan receptor B ISO (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chrNW_004936503:10,294,530...10,473,070 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO (MGI:2654998|PMID:12651948) MGI PMID:12651948 MGI:2654998 NCBI chrNW_004936502:5,163,164...5,212,940 JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (MGI:2654998|PMID:12651948) MGI PMID:12651948 MGI:2654998 NCBI chrNW_004936880:440,900...511,503 JBrowse link
G Th tyrosine hydroxylase ISO (MGI:3617102|PMID:16445854) BHF-UCL PMID:16445854 MGI:3617102 NCBI chrNW_004936794:478,651...486,887 JBrowse link
G Tulp1 TUB like protein 1 ISO (MGI:4397555|PMID:19218615) UniProt PMID:19218615 MGI:4397555 NCBI chrNW_004936476:23,744,707...23,757,002 JBrowse link
G Vegfa vascular endothelial growth factor A ISO (MGI:3607459|PMID:16251428) MGI PMID:16251428 MGI:3607459 NCBI chrNW_004936476:16,245,134...16,261,180 JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004936529:8,885,803...9,034,217 JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO (MGI:3045481|PMID:15207851) MGI PMID:15207851 MGI:3045481 NCBI chrNW_004936490:17,119,189...17,178,402 JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 ISO (MGI:2680889|PMID:14625556) MGI PMID:14625556 MGI:2680889 NCBI chrNW_004936495:1,433,124...1,449,409 JBrowse link
negative regulation of eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dio3 iodothyronine deiodinase 3 ISO (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chrNW_004936604:5,241,877...5,243,910 JBrowse link
G Thrb thyroid hormone receptor beta ISO (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chrNW_004936473:15,766,214...15,986,389 JBrowse link
negative regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cntf ciliary neurotrophic factor ISO (MGI:3045481|PMID:15207851) MGI PMID:15207851 MGI:3045481 NCBI chrNW_004936581:3,710,171...3,715,753 JBrowse link
G Dlx1 distal-less homeobox 1 ISO (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chrNW_004936509:2,248,181...2,250,991 JBrowse link
G Dlx2 distal-less homeobox 2 ISO (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chrNW_004936509:2,262,873...2,265,391 JBrowse link
G Notch1 notch receptor 1 ISO (MGI:3617079|PMID:16452096) MGI PMID:16452096 MGI:3617079 NCBI chrNW_004936669:1,292,016...1,334,061 JBrowse link
G Sox8 SRY-box transcription factor 8 ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chrNW_004936501:128,386...132,648 JBrowse link
G Sox9 SRY-box transcription factor 9 ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chrNW_004936655:1,849,044...1,852,648 JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chrNW_004936623:4,478,421...4,503,207 JBrowse link
photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl3 ADP ribosylation factor like GTPase 3 ISO (MGI:3620864|PMID:16565502) UniProt PMID:16565502 MGI:3620864 NCBI chrNW_004936600:3,190,212...3,229,831 JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:3604930|PMID:16126734) UniProt PMID:16126734 MGI:3604930 NCBI chrNW_004936496:1,396,838...1,411,082 JBrowse link
G Rp1l1 RP1 like 1 ISO (MGI:4353917|PMID:19657028) UniProt PMID:19657028 MGI:4353917 NCBI chrNW_004936675:2,527,406...2,564,464 JBrowse link
photoreceptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs1 Bardet-Biedl syndrome 1 ISO (MGI:3767384|PMID:18032602) MGI PMID:18032602 MGI:3767384 NCBI chrNW_004936599:3,059,274...3,076,853 JBrowse link
G Cabp4 calcium binding protein 4 ISO (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chrNW_004936599:2,295,124...2,299,558 JBrowse link
G Cdhr1 cadherin related family member 1 ISO (PMID:23044944) UniProtKB PMID:23044944 NCBI chrNW_004936767:805,910...829,838 JBrowse link
G CUNH8orf37 chromosome unknown C8orf37 homolog ISO (MGI:6148650|PMID:29440555) UniProt PMID:29440555 MGI:6148650 NCBI chrNW_004936544:8,170,841...8,192,896 JBrowse link
G Grk1 G protein-coupled receptor kinase 1 ISO (MGI:1334014|PMID:10097103) MGI PMID:10097103 MGI:1334014 NCBI chrNW_004936472:152,202...165,134 JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A ISO (MGI:5789479|PMID:27008858) ARUK-UCL PMID:27008858 MGI:5789479 NCBI chrNW_004936474:21,790,807...21,803,336 JBrowse link
G Rabl2b RAB, member of RAS oncogene family like 2B ISO (MGI:6094395|PMID:28625565) UniProt PMID:28625565 MGI:6094395 NCBI chrNW_004936629:60,924...75,273 JBrowse link
photoreceptor cell outer segment organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859)
(MGI:4461813|PMID:20592197)
UniProt
MGI
PMID:20081859, PMID:20592197 MGI:4437526, MGI:4461813 NCBI chrNW_004936560:2,881,631...3,057,256 JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO (MGI:5467890|PMID:23178122) MGI PMID:23178122 MGI:5467890 NCBI chrNW_004936471:31,962,500...32,019,516 JBrowse link
G Cdhr1 cadherin related family member 1 ISO (PMID:23044944) UniProtKB PMID:23044944 NCBI chrNW_004936767:805,910...829,838 JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO (MGI:5467890|PMID:23178122) MGI PMID:23178122 MGI:5467890 NCBI chrNW_004936475:9,844,438...9,908,009 JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:2675211|PMID:12915475) MGI PMID:12915475 MGI:2675211 NCBI chrNW_004936567:6,347,661...6,559,731 JBrowse link
G Ift140 intraflagellar transport 140 ISO (MGI:5604762|PMID:24619649) MGI PMID:24619649 MGI:5604762 NCBI chrNW_004936694:2,344,448...2,419,396 JBrowse link
G Ift20 intraflagellar transport 20 ISO (MGI:5317282|PMID:21307337) MGI PMID:21307337 MGI:5317282 NCBI chrNW_004936538:4,484,484...4,491,688 JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A ISO (MGI:5789479|PMID:27008858) ARUK-UCL PMID:27008858 MGI:5789479 NCBI chrNW_004936474:21,790,807...21,803,336 JBrowse link
G Nphp4 nephrocystin 4 ISO (MGI:4867588|PMID:21078623) MGI PMID:21078623 MGI:4867588 NCBI chrNW_004936623:802,152...904,198 JBrowse link
G Pcare photoreceptor cilium actin regulator ISO (MGI:5636574|PMID:25616964) MGI PMID:25616964 MGI:5636574 NCBI chrNW_004936493:3,768,032...3,781,511 JBrowse link
G Prph2 peripherin 2 ISO (MGI:5905515|PMID:28053051) MGI PMID:28053051 MGI:5905515 NCBI chrNW_004936476:17,159,756...17,174,226 JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:5905515|PMID:28053051) MGI PMID:28053051 MGI:5905515 NCBI chrNW_004936581:642,322...644,286 JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chrNW_004936496:1,396,838...1,411,082 JBrowse link
G Tmem67 transmembrane protein 67 ISO RGD PMID:23516626 RGD:11535084 NCBI chrNW_004936544:6,887,867...6,931,669 JBrowse link
positive regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule ISO RGD PMID:9236238 RGD:2306313 NCBI chrNW_004936527:10,033,095...10,042,713 JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chrNW_004936560:2,881,631...3,057,256 JBrowse link
G Cabp4 calcium binding protein 4 ISO (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chrNW_004936599:2,295,124...2,299,558 JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936744:1,499,431...1,537,784 JBrowse link
G Dio3 iodothyronine deiodinase 3 ISO (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chrNW_004936604:5,241,877...5,243,910 JBrowse link
G Gnat2 G protein subunit alpha transducin 2 ISO (MGI:3714271|PMID:17065522), (MGI:4849309|PMID:21052544) MGI PMID:17065522, PMID:21052544 MGI:3714271, MGI:4849309 NCBI chrNW_004936704:1,079,255...1,093,732 JBrowse link
G Hcn1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936480:17,051,902...17,416,335 JBrowse link
G Pde6c phosphodiesterase 6C ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936601:1,343,538...1,393,605 JBrowse link
G Rorb RAR related orphan receptor B ISO (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chrNW_004936503:10,294,530...10,473,070 JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chrNW_004936496:1,396,838...1,411,082 JBrowse link
G Thrb thyroid hormone receptor beta ISO (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chrNW_004936473:15,766,214...15,986,389 JBrowse link
G Thy1 Thy-1 cell surface antigen ISO (MGI:1349255|PMID:10567740) UniProt PMID:10567740 MGI:1349255 NCBI chrNW_004936542:4,323,905...4,329,940 JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chrNW_004936560:2,881,631...3,057,256 JBrowse link
G Alms1 ALMS1 centrosome and basal body associated protein ISO (MGI:3588454|PMID:16000322) MGI PMID:16000322 MGI:3588454 NCBI chrNW_004936491:17,152,759...17,342,648 JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO (MGI:3044824|PMID:15173597) MGI PMID:15173597 MGI:3044824 NCBI chrNW_004936471:31,962,500...32,019,516 JBrowse link
G Ccdc66 coiled-coil domain containing 66 ISO (MGI:5141557|PMID:21680557) MGI PMID:21680557 MGI:5141557 NCBI chrNW_004936473:7,027,543...7,054,079 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase ISO (MGI:3769195|PMID:17712420) MGI PMID:17712420 MGI:3769195 NCBI chrNW_004936490:17,305,033...17,312,167 JBrowse link
G Nrl neural retina leucine zipper ISO (MGI:2385798|PMID:11694879) MGI PMID:11694879 MGI:2385798 NCBI chrNW_004936722:448,006...454,064 JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 ISO (MGI:3039190|PMID:10516311) MGI PMID:10516311 MGI:3039190 NCBI chrNW_004936680:267,850...621,467 JBrowse link
G Rorb RAR related orphan receptor B ISO (MGI:3652638|PMID:16574740), (MGI:4366105|PMID:19805139) UniProt PMID:16574740, PMID:19805139 MGI:3652638, MGI:4366105 NCBI chrNW_004936503:10,294,530...10,473,070 JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chrNW_004936496:1,396,838...1,411,082 JBrowse link
G Trpm1 transient receptor potential cation channel subfamily M member 1 ISO (MGI:4420740|PMID:19966281) MGI PMID:19966281 MGI:4420740 NCBI chrNW_004936483:723,784...856,839 JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptn pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chrNW_004936592:1,706,979...1,806,345 JBrowse link
G Sox8 SRY-box transcription factor 8 ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chrNW_004936501:128,386...132,648 JBrowse link
G Sox9 SRY-box transcription factor 9 ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chrNW_004936655:1,849,044...1,852,648 JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chrNW_004936623:4,478,421...4,503,207 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12002
    cellular process 11179
      cellular developmental process 3662
        cell differentiation 3600
          neuron differentiation 1412
            photoreceptor cell differentiation 69
              eye photoreceptor cell differentiation + 49
              negative regulation of photoreceptor cell differentiation + 7
              ocellus photoreceptor cell differentiation + 0
              photoreceptor cell development + 52
              photoreceptor cell fate commitment + 3
              positive regulation of photoreceptor cell differentiation + 1
              regulation of photoreceptor cell differentiation + 10
Path 2
Term Annotations click to browse term
  biological_process 12002
    developmental process 5648
      anatomical structure development 5286
        multicellular organism development 4845
          system development 4567
            nervous system development 2365
              neurogenesis 1700
                generation of neurons 1563
                  neuron differentiation 1412
                    photoreceptor cell differentiation 69
                      eye photoreceptor cell differentiation + 49
                      negative regulation of photoreceptor cell differentiation + 7
                      ocellus photoreceptor cell differentiation + 0
                      photoreceptor cell development + 52
                      photoreceptor cell fate commitment + 3
                      positive regulation of photoreceptor cell differentiation + 1
                      regulation of photoreceptor cell differentiation + 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.