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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor cell differentiation
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Accession:GO:0046530 term browser browse the term
Definition:The specialization of organization of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light. An example of this process is found in Drosophila melanogaster.
Synonyms:alt_id: GO:0007467


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photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CFH complement factor H ISO (MGI:5796739|PMID:26149919), (MGI:6304909|PMID:30705315) MGI PMID:26149919, PMID:30705315 MGI:5796739, MGI:6304909
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PROM1 prominin 1 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 8:11,215,659...11,331,442
Ensembl chr 8:11,215,659...11,317,312
JBrowse link
G ROM1 retinal outer segment membrane protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:9,125,377...9,127,615
Ensembl chr 2:9,125,381...9,127,617
JBrowse link
G SDK2 sidekick cell adhesion molecule 2 ISO (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chr12:7,332,052...7,617,231 JBrowse link
G SLC4A7 solute carrier family 4 member 7 ISO (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chr13:13,933,552...14,043,108
Ensembl chr13:13,933,711...14,043,068
JBrowse link
G TTC8 tetratricopeptide repeat domain 8 IEA Ensembl GO_REF:0000107 NCBI chr 7:110,731,729...110,783,999
Ensembl chr 7:110,731,668...110,784,855
JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule IEA Ensembl GO_REF:0000107 NCBI chr15:121,083,750...121,090,548
Ensembl chr15:121,083,753...121,090,121
JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 1:28,566,279...28,760,471
Ensembl chr 1:28,566,266...28,760,468
JBrowse link
G CRB1 crumbs cell polarity complex component 1 IEA Ensembl GO_REF:0000107 NCBI chr10:20,137,246...20,332,539
Ensembl chr10:20,137,451...20,332,414
JBrowse link
G FSCN2 fascin actin-bundling protein 2, retinal IEA Ensembl GO_REF:0000107 NCBI chr12:1,300,286...1,311,562
Ensembl chr12:1,300,225...1,313,421
JBrowse link
G GABRR2 gamma-aminobutyric acid type A receptor subunit rho2 NOT ISO (MGI:2179933|PMID:12019334) MGI PMID:12019334 MGI:2179933 NCBI chr 1:57,287,265...57,332,342
Ensembl chr 1:57,222,558...57,332,720
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 IEA Ensembl GO_REF:0000107 NCBI chr13:32,671,377...32,678,394
Ensembl chr13:32,671,432...32,678,394
JBrowse link
G GNGT1 G protein subunit gamma transducin 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:73,403,647...73,717,746
Ensembl chr 9:73,403,739...73,719,168
JBrowse link
G MFRP membrane frizzled-related protein IEA Ensembl GO_REF:0000107 NCBI chr 9:46,550,383...46,556,305
Ensembl chr 9:46,548,175...46,556,077
JBrowse link
G NR2E3 nuclear receptor subfamily 2 group E member 3 IEA Ensembl GO_REF:0000107 NCBI chr 1:169,358,662...169,373,175
Ensembl chr 1:169,360,729...169,366,087
JBrowse link
G OLFM3 olfactomedin 3 ISO RGD PMID:12019210 RGD:633402 NCBI chr 4:116,428,889...116,626,134
Ensembl chr 4:116,429,181...116,623,933
JBrowse link
G PAX6 paired box 6 IEA Ensembl GO_REF:0000107 NCBI chr 2:28,971,565...29,001,149
Ensembl chr 2:28,971,567...29,001,200
JBrowse link
G PDGFB platelet derived growth factor subunit B ISO (MGI:5607451|PMID:25224828) MGI PMID:25224828 MGI:5607451 Ensembl chr 5:8,986,461...9,007,446 JBrowse link
G PRDM1 PR/SET domain 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:72,309,096...72,335,474
Ensembl chr 1:72,311,880...72,335,466
JBrowse link
G PRKCI protein kinase C iota IEA Ensembl GO_REF:0000107 NCBI chr13:108,913,018...108,997,934
Ensembl chr13:108,912,758...108,997,929
JBrowse link
G RDH13 retinol dehydrogenase 13 IEA Ensembl GO_REF:0000107 NCBI chr 6:59,274,383...59,293,139
Ensembl chr 6:59,274,380...59,314,697
JBrowse link
G RORB RAR related orphan receptor B ISO (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chr 1:227,573,972...227,776,806
Ensembl chr 1:227,574,647...227,772,693
JBrowse link
G RPGR retinitis pigmentosa GTPase regulator ISO (MGI:2654998|PMID:12651948) MGI PMID:12651948 MGI:2654998 NCBI chr  X:34,238,961...34,522,814 JBrowse link
G RPGRIP1 RPGR interacting protein 1 IEA InterPro GO_REF:0000002 NCBI chr 7:77,813,964...77,903,973
Ensembl chr 7:77,814,708...77,903,928
JBrowse link
G TH tyrosine hydroxylase IEA Ensembl GO_REF:0000107 NCBI chr 2:1,499,628...1,506,180
Ensembl chr 2:1,499,618...1,506,615
JBrowse link
G TULP1 TUB like protein 1 ISO (MGI:4397555|PMID:19218615) UniProt PMID:19218615 MGI:4397555 NCBI chr 7:31,362,670...31,379,948
Ensembl chr 7:31,362,512...31,379,114
JBrowse link
G VEGFA vascular endothelial growth factor A ISO (MGI:3607459|PMID:16251428) MGI PMID:16251428 MGI:3607459 NCBI chr 7:38,746,393...38,762,282
Ensembl chr 7:38,746,052...38,761,038
JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGTPBP1 ATP/GTP binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr10:29,440,150...29,590,457
Ensembl chr10:29,440,145...29,590,454
JBrowse link
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr13:76,945,318...77,148,521
Ensembl chr13:76,945,358...77,147,531
JBrowse link
G STAT3 signal transducer and activator of transcription 3 IEA Ensembl GO_REF:0000107 NCBI chr12:20,407,316...20,471,091
Ensembl chr12:20,407,233...20,472,993
JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTX2 orthodenticle homeobox 2 ISO (MGI:2680889|PMID:14625556) MGI PMID:14625556 MGI:2680889 NCBI chr 1:186,028,575...186,039,026
Ensembl chr 1:186,028,575...186,038,229
JBrowse link
negative regulation of eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DIO3 iodothyronine deiodinase 3 IEA Ensembl GO_REF:0000107
G THRB thyroid hormone receptor beta IEA Ensembl GO_REF:0000107 NCBI chr13:10,900,716...11,360,587
Ensembl chr13:10,900,718...11,359,544
JBrowse link
negative regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNTF ciliary neurotrophic factor ISO (MGI:3045481|PMID:15207851) MGI PMID:15207851 MGI:3045481 NCBI chr 2:12,492,777...12,495,401 JBrowse link
G DLX1 distal-less homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr15:78,186,667...78,191,788
Ensembl chr15:78,185,790...78,191,297
JBrowse link
G DLX2 distal-less homeobox 2 IEA Ensembl GO_REF:0000107 NCBI chr15:78,200,696...78,204,264
Ensembl chr15:78,201,892...78,204,157
JBrowse link
G NOTCH1 notch receptor 1 IEA Ensembl GO_REF:0000107
G SOX8 SRY-box transcription factor 8 IEA Ensembl GO_REF:0000107 NCBI chr 3:40,825,151...40,830,085
Ensembl chr 3:40,710,043...40,830,737
JBrowse link
G SOX9 SRY-box transcription factor 9 ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315
JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 6:70,876,329...71,029,495
Ensembl chr 6:70,879,984...70,995,922
JBrowse link
photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL3 ADP ribosylation factor like GTPase 3 ISO (MGI:3620864|PMID:16565502) UniProt PMID:16565502 MGI:3620864 NCBI chr14:113,668,375...113,699,583
Ensembl chr14:113,665,270...113,707,501
JBrowse link
G DCLK2 doublecortin like kinase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:78,680,241...78,854,909
Ensembl chr 8:78,681,415...78,854,848
JBrowse link
G DCX doublecortin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:91,317,671...91,644,572
Ensembl chr  X:91,323,768...91,644,567
JBrowse link
G RP1 RP1 axonemal microtubule associated ISO (MGI:3604930|PMID:16126734) UniProt PMID:16126734 MGI:3604930 NCBI chr 4:76,724,604...76,730,264
Ensembl chr 4:76,724,604...76,734,610
JBrowse link
G RP1L1 RP1 like 1 ISO (MGI:4353917|PMID:19657028) UniProt PMID:19657028 MGI:4353917 NCBI chr14:13,790,287...13,841,230 JBrowse link
photoreceptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS1 Bardet-Biedl syndrome 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:5,886,989...5,906,468 JBrowse link
G C4H8orf37 chromosome 4 C8orf37 homolog IEA Ensembl GO_REF:0000107 NCBI chr 4:41,373,725...41,394,688
Ensembl chr 4:41,373,739...41,394,685
JBrowse link
G CABP4 calcium binding protein 4 IEA Ensembl GO_REF:0000107 NCBI chr 2:5,068,535...5,079,482
Ensembl chr 2:5,068,037...5,072,188
JBrowse link
G CDHR1 cadherin related family member 1 IEA Ensembl GO_REF:0000107 NCBI chr14:85,429,506...85,455,823
Ensembl chr14:85,429,801...85,455,850
JBrowse link
G GRK1 G protein-coupled receptor kinase 1 ISO (MGI:1334014|PMID:10097103) MGI PMID:10097103 MGI:1334014 NCBI chr11:78,793,670...78,803,291
Ensembl chr11:78,793,777...78,803,297
JBrowse link
G LOC110260809 rab-like protein 2A ISO (MGI:6094395|PMID:28625565) UniProt PMID:28625565 MGI:6094395 NCBI chr 5:104,510,606...104,525,994 JBrowse link
G MFSD2A major facilitator superfamily domain containing 2A IEA Ensembl GO_REF:0000107 NCBI chr 6:95,738,961...95,753,245
Ensembl chr 6:95,738,973...95,814,953
JBrowse link
G RABL2B RAB, member of RAS oncogene family like 2B IEA Ensembl GO_REF:0000107 NCBI chr 5:10,346...20,499 JBrowse link
photoreceptor cell outer segment organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISS UniProt GO_REF:0000024 NCBI chr 1:28,566,279...28,760,471
Ensembl chr 1:28,566,266...28,760,468
JBrowse link
G BBS4 Bardet-Biedl syndrome 4 ISO (MGI:5467890|PMID:23178122) MGI PMID:23178122 MGI:5467890 NCBI chr 7:60,631,913...60,693,359 JBrowse link
G CDHR1 cadherin related family member 1 IEA Ensembl GO_REF:0000107 NCBI chr14:85,429,506...85,455,823
Ensembl chr14:85,429,801...85,455,850
JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 ISO (MGI:5467890|PMID:23178122) MGI PMID:23178122 MGI:5467890 NCBI chr 6:19,752,734...19,865,830 JBrowse link
G CRB1 crumbs cell polarity complex component 1 IEA Ensembl GO_REF:0000107 NCBI chr10:20,137,246...20,332,539
Ensembl chr10:20,137,451...20,332,414
JBrowse link
G IFT140 intraflagellar transport 140 IEA Ensembl GO_REF:0000107 NCBI chr 3:40,309,298...40,372,139
Ensembl chr 3:40,309,651...40,372,136
JBrowse link
G IFT20 intraflagellar transport 20 IEA Ensembl GO_REF:0000107 NCBI chr12:44,609,586...44,616,685
Ensembl chr12:44,609,586...44,616,669
JBrowse link
G MFSD2A major facilitator superfamily domain containing 2A IEA Ensembl GO_REF:0000107 NCBI chr 6:95,738,961...95,753,245
Ensembl chr 6:95,738,973...95,814,953
JBrowse link
G NPHP1 nephrocystin 1 ISO (MGI:4437526|PMID:20081859) UniProt PMID:20081859 MGI:4437526 NCBI chr 3:46,316,864...46,378,279
Ensembl chr 3:46,281,570...46,377,273
JBrowse link
G NPHP4 nephrocystin 4 IEA Ensembl GO_REF:0000107 NCBI chr 6:66,815,282...66,928,245
Ensembl chr 6:66,815,281...66,928,146
JBrowse link
G PCARE photoreceptor cilium actin regulator IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:110,209,100...110,220,608
Ensembl chr 3:110,209,535...110,218,348
JBrowse link
G PRPH2 peripherin 2 IEA Ensembl GO_REF:0000107 NCBI chr 7:37,788,547...37,805,142
Ensembl chr 7:37,790,178...37,805,142
JBrowse link
G ROM1 retinal outer segment membrane protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:9,125,377...9,127,615
Ensembl chr 2:9,125,381...9,127,617
JBrowse link
G RP1 RP1 axonemal microtubule associated IEA Ensembl GO_REF:0000107 NCBI chr 4:76,724,604...76,730,264
Ensembl chr 4:76,724,604...76,734,610
JBrowse link
G TMEM67 transmembrane protein 67 ISO RGD PMID:23516626 RGD:11535084 NCBI chr 4:42,878,249...42,931,106
Ensembl chr 4:42,878,254...42,931,121
JBrowse link
positive regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRX cone-rod homeobox ISO RGD PMID:16799048 RGD:1600973 NCBI chr 6:53,506,410...53,509,858
Ensembl chr 6:53,506,410...53,512,191
JBrowse link
G SHH sonic hedgehog signaling molecule ISO RGD PMID:9236238 RGD:2306313 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,718...2,555,484
JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 1:28,566,279...28,760,471
Ensembl chr 1:28,566,266...28,760,468
JBrowse link
G CABP4 calcium binding protein 4 IEA Ensembl GO_REF:0000107 NCBI chr 2:5,068,535...5,079,482
Ensembl chr 2:5,068,037...5,072,188
JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 3:55,872,607...55,936,516
Ensembl chr 3:55,874,250...55,922,979
JBrowse link
G DIO3 iodothyronine deiodinase 3 IEA Ensembl GO_REF:0000107
G GNAT2 G protein subunit alpha transducin 2 IEA Ensembl GO_REF:0000107 NCBI chr 4:110,512,349...110,523,222
Ensembl chr 4:110,513,213...110,523,071
JBrowse link
G HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 IEA Ensembl GO_REF:0000107 NCBI chr16:29,439,294...29,808,855
Ensembl chr16:29,439,263...29,809,748
JBrowse link
G MIR124A-1 microRNA mir-124a-1 ISO (MGI:5303045|PMID:21857657) MGI PMID:21857657 MGI:5303045 NCBI chr 4:69,968,854...69,968,958
Ensembl chr 4:69,968,854...69,968,958
JBrowse link
G MIR124A-2 microRNA mir-124a-2 ISO (MGI:5303045|PMID:21857657) MGI PMID:21857657 MGI:5303045 NCBI chr14:13,201,425...13,201,509
Ensembl chr14:13,201,425...13,201,509
JBrowse link
G MIR183 microRNA mir-183 ISO (MGI:5469752|PMID:23341629) MGI PMID:23341629 MGI:5469752 NCBI chr18:18,982,269...18,982,338
Ensembl chr18:18,982,269...18,982,338
JBrowse link
G MIR96 microRNA mir-96 ISO (MGI:5469752|PMID:23341629) MGI PMID:23341629 MGI:5469752 NCBI chr18:18,982,506...18,982,590
Ensembl chr18:18,982,506...18,982,590
JBrowse link
G PDE6C phosphodiesterase 6C IEA Ensembl GO_REF:0000107 NCBI chr14:105,010,974...105,122,628
Ensembl chr14:105,011,922...105,037,498
Ensembl chr14:105,011,922...105,037,498
JBrowse link
G RORB RAR related orphan receptor B IEA Ensembl GO_REF:0000107 NCBI chr 1:227,573,972...227,776,806
Ensembl chr 1:227,574,647...227,772,693
JBrowse link
G RP1 RP1 axonemal microtubule associated IEA Ensembl GO_REF:0000107 NCBI chr 4:76,724,604...76,730,264
Ensembl chr 4:76,724,604...76,734,610
JBrowse link
G THRB thyroid hormone receptor beta IEA Ensembl GO_REF:0000107 NCBI chr13:10,900,716...11,360,587
Ensembl chr13:10,900,718...11,359,544
JBrowse link
G THY1 Thy-1 cell surface antigen IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 9:46,607,022...46,612,691
Ensembl chr 9:46,607,494...46,612,269
JBrowse link
G USH1C USH1 protein network component harmonin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:41,593,793...41,646,777
Ensembl chr 2:41,593,802...41,647,411
JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 1:28,566,279...28,760,471
Ensembl chr 1:28,566,266...28,760,468
JBrowse link
G ALMS1 ALMS1 centrosome and basal body associated protein ISO (MGI:3588454|PMID:16000322) MGI PMID:16000322 MGI:3588454 NCBI chr 3:69,253,742...69,417,043
Ensembl chr 3:69,253,748...69,417,397
JBrowse link
G BBS4 Bardet-Biedl syndrome 4 ISO (MGI:3044824|PMID:15173597) MGI PMID:15173597 MGI:3044824 NCBI chr 7:60,631,913...60,693,359 JBrowse link
G BHLHE23 basic helix-loop-helix family member e23 ISO (MGI:3814679|PMID:17255172) MGI PMID:17255172 MGI:3814679 NCBI chr17:62,217,583...62,228,599 JBrowse link
G CCDC66 coiled-coil domain containing 66 ISO (MGI:5141557|PMID:21680557) MGI PMID:21680557 MGI:5141557 NCBI chr13:38,438,669...38,493,212
Ensembl chr13:38,438,701...38,492,439
JBrowse link
G CFH complement factor H ISO (MGI:3760334|PMID:17921253) MGI PMID:17921253 MGI:3760334
G NAGLU N-acetyl-alpha-glucosaminidase IEA Ensembl GO_REF:0000107 Ensembl chr12:20,269,930...20,279,582 JBrowse link
G NRL neural retina leucine zipper IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:75,199,048...75,211,655
Ensembl chr 7:75,199,196...75,210,529
JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 IEA Ensembl GO_REF:0000107 NCBI chr10:30,030,050...30,429,938
Ensembl chr10:30,033,379...30,429,882
JBrowse link
G RORB RAR related orphan receptor B IEA Ensembl GO_REF:0000107 NCBI chr 1:227,573,972...227,776,806
Ensembl chr 1:227,574,647...227,772,693
JBrowse link
G RP1 RP1 axonemal microtubule associated IEA Ensembl GO_REF:0000107 NCBI chr 4:76,724,604...76,730,264
Ensembl chr 4:76,724,604...76,734,610
JBrowse link
G RPGRIP1 RPGR interacting protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:77,813,964...77,903,973
Ensembl chr 7:77,814,708...77,903,928
JBrowse link
G RPGRIP1L RPGRIP1 like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:31,564,937...31,660,540
Ensembl chr 6:31,564,986...31,661,194
JBrowse link
G TRPM1 transient receptor potential cation channel subfamily M member 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:143,718,295...143,856,968
Ensembl chr 1:143,709,864...143,855,984
JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTN pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chr18:12,219,708...12,309,045
Ensembl chr18:12,219,790...12,311,922
JBrowse link
G SOX8 SRY-box transcription factor 8 IEA Ensembl GO_REF:0000107 NCBI chr 3:40,825,151...40,830,085
Ensembl chr 3:40,710,043...40,830,737
JBrowse link
G SOX9 SRY-box transcription factor 9 ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315
JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 6:70,876,329...71,029,495
Ensembl chr 6:70,879,984...70,995,922
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16548
    cellular process 15780
      cellular developmental process 4143
        cell differentiation 4056
          neuron differentiation 1560
            photoreceptor cell differentiation 83
              eye photoreceptor cell differentiation + 58
              negative regulation of photoreceptor cell differentiation + 7
              ocellus photoreceptor cell differentiation + 0
              photoreceptor cell development + 64
              photoreceptor cell fate commitment + 3
              positive regulation of photoreceptor cell differentiation + 2
              regulation of photoreceptor cell differentiation + 11
Path 2
Term Annotations click to browse term
  biological_process 16548
    developmental process 6302
      anatomical structure development 5842
        multicellular organism development 5340
          system development 4963
            nervous system development 2592
              neurogenesis 1866
                generation of neurons 1718
                  neuron differentiation 1560
                    photoreceptor cell differentiation 83
                      eye photoreceptor cell differentiation + 58
                      negative regulation of photoreceptor cell differentiation + 7
                      ocellus photoreceptor cell differentiation + 0
                      photoreceptor cell development + 64
                      photoreceptor cell fate commitment + 3
                      positive regulation of photoreceptor cell differentiation + 2
                      regulation of photoreceptor cell differentiation + 11
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.