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ONTOLOGY REPORT - ANNOTATIONS

Term:photoreceptor cell differentiation
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Accession:GO:0046530 term browser browse the term
Definition:The specialization of organization of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light. An example of this process is found in Drosophila melanogaster.
Synonyms:alt_id: GO:0007467

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photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36700052) MGI PMID:36700052 NCBI chrNW_004624750:21,759,412...21,763,608
Ensembl chrNW_004624750:21,759,495...21,766,679 		JBrowse link
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:26149919), (PMID:30705315) MGI PMID:26149919 PMID:30705315 NCBI chrNW_004624798:3,332,549...3,414,435 JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within ISO (PMID:27715390) MGI PMID:27715390 NCBI chrNW_004624730:73,910,843...73,923,273
Ensembl chrNW_004624730:73,910,405...73,926,844 		JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within ISO (PMID:31628468) MGI PMID:31628468 NCBI chrNW_004624778:9,490,744...9,614,289
Ensembl chrNW_004624778:9,491,258...9,614,299 		JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prom1 prominin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624755:15,765,162...15,886,023
Ensembl chrNW_004624755:15,771,286...15,886,348 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (PMID:20300562) MGI PMID:20300562 NCBI chrNW_004624926:1,140,082...1,142,434
Ensembl chrNW_004624926:1,140,793...1,142,253 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO (PMID:26287463) UniProt PMID:26287463 NCBI chrNW_004624801:3,412,950...3,667,030
Ensembl chrNW_004624801:3,416,835...3,666,635 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (PMID:12808454) MGI PMID:12808454 NCBI chrNW_004624788:5,239,858...5,355,186
Ensembl chrNW_004624788:5,243,807...5,355,073 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO (PMID:21646512) MGI PMID:21646512 NCBI chrNW_004624734:13,437,234...13,497,269
Ensembl chrNW_004624734:13,437,221...13,497,510 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769 		JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chrNW_004624886:2,189,753...2,403,174
Ensembl chrNW_004624886:2,189,655...2,397,364 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:21052544)
(PMID:12915475)		 MGI PMID:12915475 PMID:21052544 NCBI chrNW_004624798:2,861,481...2,999,387
Ensembl chrNW_004624798:2,861,520...2,999,697 		JBrowse link
G Dzank1 double zinc ribbon and ankyrin repeat domains 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:19,142,193...19,196,577
Ensembl chrNW_004624741:19,143,109...19,194,243 		JBrowse link
G Fscn2 fascin actin-bundling protein 2, retinal acts_upstream_of_or_within ISO (PMID:16043865) MGI PMID:16043865 NCBI chrNW_004624801:10,511,539...10,518,073
Ensembl chrNW_004624801:10,511,673...10,517,753 		JBrowse link
G Gabrr2 gamma-aminobutyric acid type A receptor subunit rho2 NOT|acts_upstream_of_or_within ISO (PMID:12019334) MGI PMID:12019334 NCBI chrNW_004624799:4,841,856...4,900,704
Ensembl chrNW_004624799:4,841,898...4,900,172 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:4,064,982...4,072,172
Ensembl chrNW_004624730:4,066,222...4,071,316 		JBrowse link
G Gngt1 G protein subunit gamma transducin 1 acts_upstream_of_or_within ISO (PMID:18367617) MGI PMID:18367617 NCBI chrNW_004624813:579,173...594,039
Ensembl chrNW_004624813:590,580...594,085 		JBrowse link
G LOC101698489 centrosomal protein POC5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624869:141,258...178,392 JBrowse link
G LOC101725169 centrosomal protein POC5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624905:2,678,562...2,693,966 JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624784:14,709,834...14,714,927
Ensembl chrNW_004624784:14,710,042...14,714,715 		JBrowse link
G Nr2e3 nuclear receptor subfamily 2 group E member 3 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004624781:2,201,656...2,210,495
Ensembl chrNW_004624781:2,202,614...2,207,782 		JBrowse link
G Olfm3 olfactomedin 3 ISO RGD PMID:12019210 RGD:633402 NCBI chrNW_004624857:4,804,191...5,010,423
Ensembl chrNW_004624857:4,802,197...5,010,550 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO (PMID:25224828) MGI PMID:25224828 NCBI chrNW_004624752:9,072,471...9,088,289
Ensembl chrNW_004624752:9,072,512...9,088,593 		JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624780:16,205,056...16,227,382
Ensembl chrNW_004624780:16,204,838...16,227,390 		JBrowse link
G Prkci protein kinase C iota acts_upstream_of_or_within ISO (PMID:16267237) MGI PMID:16267237 NCBI chrNW_004624730:48,258,524...48,340,217 JBrowse link
G Rdh13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO (PMID:22605914) MGI PMID:22605914 NCBI chrNW_004624832:2,141,906...2,159,009
Ensembl chrNW_004624832:2,141,902...2,159,009 		JBrowse link
G Rorb RAR related orphan receptor B involved_in ISO (PMID:16574740) UniProt PMID:16574740 NCBI chrNW_004624811:2,076,474...2,281,933
Ensembl chrNW_004624811:2,076,437...2,277,040 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO (PMID:12651948) MGI PMID:12651948 NCBI chrNW_004624762:17,135,870...17,199,693 JBrowse link
G Rpgrip1 RPGR interacting protein 1 acts_upstream_of_or_within ISO (PMID:12651948) MGI PMID:12651948 NCBI chrNW_004624825:7,289,385...7,366,388
Ensembl chrNW_004624825:7,296,662...7,366,196 		JBrowse link
G Th tyrosine hydroxylase involved_in ISO (PMID:16445854) BHF-UCL PMID:16445854 NCBI chrNW_004624767:15,003,073...15,010,207
Ensembl chrNW_004624767:15,003,092...15,010,154 		JBrowse link
G Tulp1 TUB like protein 1 involved_in ISO (PMID:19218615) UniProt PMID:19218615 NCBI chrNW_004624754:21,961,513...21,971,362 JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO (PMID:16251428) MGI PMID:16251428 NCBI chrNW_004624754:15,929,414...15,943,637 JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 involved_in ISO (PMID:16465590) UniProt PMID:16465590 NCBI chrNW_004624809:9,119,412...9,321,226
Ensembl chrNW_004624809:9,119,951...9,339,604 		JBrowse link
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004624730:12,384,691...12,568,115
Ensembl chrNW_004624730:12,429,902...12,567,683 		JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:14625556) MGI PMID:14625556 NCBI chrNW_004624884:1,830,645...1,840,213 JBrowse link
negative regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cntf ciliary neurotrophic factor acts_upstream_of_or_within ISO (PMID:15207851) MGI PMID:15207851 NCBI chrNW_004624864:1,785,215...1,788,608
Ensembl chrNW_004624864:1,782,139...1,792,879 		JBrowse link
G Dlx1 distal-less homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624787:9,514,170...9,519,309
Ensembl chrNW_004624787:9,514,573...9,519,724 		JBrowse link
G Dlx2 distal-less homeobox 2 involved_in ISO (PMID:21875655) UniProt PMID:21875655 NCBI chrNW_004624787:9,528,942...9,532,252
Ensembl chrNW_004624787:9,530,034...9,533,109 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:16452096) MGI PMID:16452096 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531 		JBrowse link
G Sox8 SRY-box transcription factor 8 acts_upstream_of_or_within ISO (PMID:19490914) MGI PMID:19490914 NCBI chrNW_004624913:1,759,460...1,764,242
Ensembl chrNW_004624913:1,759,548...1,764,344 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:19490914) MGI PMID:19490914 NCBI chrNW_004624801:2,296,353...2,300,853
Ensembl chrNW_004624801:2,296,168...2,301,596 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chrNW_004624818:2,024,553...2,078,708
Ensembl chrNW_004624818:2,024,461...2,076,551 		JBrowse link
photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl3 ARF like GTPase 3 involved_in ISO (PMID:16565502) UniProt PMID:16565502 NCBI chrNW_004624831:2,041,241...2,077,801
Ensembl chrNW_004624831:2,037,023...2,078,220 		JBrowse link
G Dclk1 doublecortin like kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624776:1,299,691...1,679,888
Ensembl chrNW_004624776:1,301,762...1,676,835 		JBrowse link
G Dclk2 doublecortin like kinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624858:1,638,145...1,809,605
Ensembl chrNW_004624858:1,637,986...1,788,172 		JBrowse link
G Dcx doublecortin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624803:4,168,556...4,304,642
Ensembl chrNW_004624803:4,168,556...4,299,979 		JBrowse link
G Fam151b family with sequence similarity 151 member B involved_in ISO (PMID:31949211) UniProt PMID:31949211 NCBI chrNW_004624743:1,389,721...1,405,429
Ensembl chrNW_004624743:1,388,750...1,405,429 		JBrowse link
G Rp1 RP1 axonemal microtubule associated involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:1,129,333...1,179,387
Ensembl chrNW_004624735:1,093,929...1,179,265 		JBrowse link
G Rp1l1 RP1 like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624758:24,480,805...24,516,524 JBrowse link
photoreceptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO (PMID:18032602) MGI PMID:18032602 NCBI chrNW_004624767:19,875,597...19,893,652
Ensembl chrNW_004624767:19,875,535...19,893,694 		JBrowse link
G Cdhr1 cadherin related family member 1 involved_in ISO (PMID:23044944) UniProt PMID:23044944 NCBI chrNW_004624841:2,820,543...2,838,998
Ensembl chrNW_004624841:2,820,546...2,839,005 		JBrowse link
G Cfap418 cilia and flagella associated protein 418 involved_in ISO (PMID:29440555) UniProt PMID:29440555 NCBI chrNW_004624763:2,587,443...2,613,066
Ensembl chrNW_004624763:2,593,034...2,612,983 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within ISO (PMID:10097103) MGI PMID:10097103 NCBI chrNW_004624793:453,125...462,053
Ensembl chrNW_004624793:453,125...462,053 		JBrowse link
G LOC101702208 calcium-binding protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:19,069,262...19,081,258
Ensembl chrNW_004624767:19,070,555...19,073,507 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO (PMID:27008858) ARUK-UCL PMID:27008858 NCBI chrNW_004624764:22,422,520...22,435,332
Ensembl chrNW_004624764:22,422,423...22,435,416 		JBrowse link
G Rabl2b RAB, member of RAS oncogene family like 2B involved_in ISO (PMID:28625565) UniProt PMID:28625565 NCBI chrNW_004624752:12,782...33,152 JBrowse link
photoreceptor cell outer segment organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:20592197)
(PMID:20081859)		 MGI
UniProt		 PMID:20081859 PMID:20592197 NCBI chrNW_004624886:2,189,753...2,403,174
Ensembl chrNW_004624886:2,189,655...2,397,364 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO (PMID:23178122) MGI PMID:23178122 NCBI chrNW_004624781:1,502,069...1,553,101
Ensembl chrNW_004624781:1,503,816...1,538,755 		JBrowse link
G Cdhr1 cadherin related family member 1 involved_in ISO (PMID:23044944) UniProt PMID:23044944 NCBI chrNW_004624841:2,820,543...2,838,998
Ensembl chrNW_004624841:2,820,546...2,839,005 		JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 acts_upstream_of_or_within ISO (PMID:23178122) MGI PMID:23178122 NCBI chrNW_004624746:28,198,324...28,268,280 JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:12915475) MGI PMID:12915475 NCBI chrNW_004624798:2,861,481...2,999,387
Ensembl chrNW_004624798:2,861,520...2,999,697 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:24619649) MGI PMID:24619649 NCBI chrNW_004624913:616,283...712,040
Ensembl chrNW_004624913:621,203...711,493 		JBrowse link
G Ift20 intraflagellar transport 20 acts_upstream_of_or_within ISO (PMID:21307337) MGI PMID:21307337 NCBI chrNW_004624786:928,123...939,515 JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO (PMID:27008858) ARUK-UCL PMID:27008858 NCBI chrNW_004624764:22,422,520...22,435,332
Ensembl chrNW_004624764:22,422,423...22,435,416 		JBrowse link
G Nphp1 nephrocystin 1 involved_in ISO (PMID:20081859) UniProt PMID:20081859 NCBI chrNW_004624749:1,725,515...1,779,787
Ensembl chrNW_004624749:1,725,598...1,779,344 		JBrowse link
G Nphp4 nephrocystin 4 acts_upstream_of_or_within ISO (PMID:21078623) MGI PMID:21078623 NCBI chrNW_004624818:5,325,946...5,432,290
Ensembl chrNW_004624818:5,327,038...5,432,901 		JBrowse link
G Pcare photoreceptor cilium actin regulator acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25616964) MGI
TreeGrafter		 PMID:25616964 GO_REF:0000118 NCBI chrNW_004624738:10,948,502...10,962,353
Ensembl chrNW_004624738:10,953,896...10,962,103 		JBrowse link
G Prph2 peripherin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:16,685,512...16,699,145
Ensembl chrNW_004624754:16,685,378...16,700,111 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (PMID:28053051) MGI PMID:28053051 NCBI chrNW_004624926:1,140,082...1,142,434
Ensembl chrNW_004624926:1,140,793...1,142,253 		JBrowse link
G Rp1 RP1 axonemal microtubule associated involved_in ISO (PMID:14507858) UniProt PMID:14507858 NCBI chrNW_004624735:1,129,333...1,179,387
Ensembl chrNW_004624735:1,093,929...1,179,265 		JBrowse link
G Tmem67 transmembrane protein 67 ISO RGD PMID:23516626 RGD:11535084 NCBI chrNW_004624763:1,219,779...1,281,297
Ensembl chrNW_004624763:1,219,827...1,264,071 		JBrowse link
positive regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crx cone-rod homeobox ISO RGD PMID:16799048 RGD:1600973 NCBI chrNW_004624832:6,103,530...6,108,129
Ensembl chrNW_004624832:6,104,229...6,108,146 		JBrowse link
G Shh sonic hedgehog signaling molecule ISO RGD PMID:9236238 RGD:2306313 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chrNW_004624886:2,189,753...2,403,174
Ensembl chrNW_004624886:2,189,655...2,397,364 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004624749:3,458,997...3,482,697
Ensembl chrNW_004624749:3,458,991...3,483,003 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (PMID:23001562) UniProt PMID:23001562 NCBI chrNW_004624760:11,576,683...11,598,354
Ensembl chrNW_004624760:11,579,163...11,598,287 		JBrowse link
G Dio3 iodothyronine deiodinase 3 acts_upstream_of_or_within ISO
IEA		 (PMID:20203194) MGI
Ensembl		 PMID:20203194 GO_REF:0000107 NCBI chrNW_004624734:2,611,864...2,613,932 JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:17065522), (PMID:21052544) MGI PMID:17065522 PMID:21052544 NCBI chrNW_004624772:5,317,702...5,326,841
Ensembl chrNW_004624772:5,318,113...5,326,841 		JBrowse link
G Hcn1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004624759:9,636,380...10,044,832
Ensembl chrNW_004624759:9,636,457...10,049,403 		JBrowse link
G LOC101702208 calcium-binding protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:19,069,262...19,081,258
Ensembl chrNW_004624767:19,070,555...19,073,507 		JBrowse link
G Pde6c phosphodiesterase 6C acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004624737:4,804,630...4,867,565
Ensembl chrNW_004624737:4,810,806...4,867,370 		JBrowse link
G Rorb RAR related orphan receptor B involved_in ISO (PMID:16574740) UniProt PMID:16574740 NCBI chrNW_004624811:2,076,474...2,281,933
Ensembl chrNW_004624811:2,076,437...2,277,040 		JBrowse link
G Rp1 RP1 axonemal microtubule associated involved_in ISO (PMID:14507858) UniProt PMID:14507858 NCBI chrNW_004624735:1,129,333...1,179,387
Ensembl chrNW_004624735:1,093,929...1,179,265 		JBrowse link
G Thrb thyroid hormone receptor beta acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004624788:1,950,888...2,348,895
Ensembl chrNW_004624788:1,950,890...2,349,343 		JBrowse link
G Thy1 Thy-1 cell surface antigen involved_in ISO (PMID:10567740) UniProt PMID:10567740 NCBI chrNW_004624784:14,779,533...14,784,315
Ensembl chrNW_004624784:14,780,698...14,784,897 		JBrowse link
G Ush1c USH1 protein network component harmonin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624766:9,097,466...9,153,602
Ensembl chrNW_004624766:9,105,990...9,153,663 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) MGI PMID:36125046 NCBI chrNW_004624750:21,759,412...21,763,608
Ensembl chrNW_004624750:21,759,495...21,766,679 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:4,064,982...4,072,172
Ensembl chrNW_004624730:4,066,222...4,071,316 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chrNW_004624772:5,317,702...5,326,841
Ensembl chrNW_004624772:5,318,113...5,326,841 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of ISO (PMID:16452096) MGI PMID:16452096 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531 		JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chrNW_004624886:2,189,753...2,403,174
Ensembl chrNW_004624886:2,189,655...2,397,364 		JBrowse link
G Alms1 ALMS1 centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:16000322) MGI PMID:16000322 NCBI chrNW_004624762:129,349...268,945
Ensembl chrNW_004624762:128,491...269,006 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO (PMID:15173597) MGI PMID:15173597 NCBI chrNW_004624781:1,502,069...1,553,101
Ensembl chrNW_004624781:1,503,816...1,538,755 		JBrowse link
G Bhlhe23 basic helix-loop-helix family member e23 acts_upstream_of_or_within ISO (PMID:17255172) MGI PMID:17255172 NCBI chrNW_004624741:28,762,079...28,766,989
Ensembl chrNW_004624741:28,766,303...28,766,920 		JBrowse link
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:17921253) MGI PMID:17921253 NCBI chrNW_004624798:3,332,549...3,414,435 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO (PMID:17712420) MGI PMID:17712420 NCBI chrNW_004624795:1,553,582...1,558,110
Ensembl chrNW_004624795:1,553,037...1,558,197 		JBrowse link
G Nrl neural retina leucine zipper involved_in
acts_upstream_of_or_within		 IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624820:8,436,469...8,449,354
Ensembl chrNW_004624820:8,444,687...8,449,354 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within ISO (PMID:10516311) MGI PMID:10516311 NCBI chrNW_004624809:8,274,736...8,622,287
Ensembl chrNW_004624809:8,276,951...8,616,765 		JBrowse link
G Rorb RAR related orphan receptor B involved_in ISO (PMID:16574740), (PMID:19805139) UniProt PMID:16574740 PMID:19805139 NCBI chrNW_004624811:2,076,474...2,281,933
Ensembl chrNW_004624811:2,076,437...2,277,040 		JBrowse link
G Rp1 RP1 axonemal microtubule associated involved_in ISO (PMID:14507858) UniProt PMID:14507858 NCBI chrNW_004624735:1,129,333...1,179,387
Ensembl chrNW_004624735:1,093,929...1,179,265 		JBrowse link
G Rpgrip1 RPGR interacting protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624825:7,289,385...7,366,388
Ensembl chrNW_004624825:7,296,662...7,366,196 		JBrowse link
G Rpgrip1l RPGRIP1 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624757:3,080,162...3,172,750
Ensembl chrNW_004624757:3,079,712...3,172,115 		JBrowse link
G Samd11 sterile alpha motif domain containing 11 involved_in ISO (PMID:33603070) UniProt PMID:33603070 NCBI chrNW_004624818:8,563,376...8,581,028
Ensembl chrNW_004624818:8,563,879...8,581,015 		JBrowse link
G Samd7 sterile alpha motif domain containing 7 involved_in ISO (PMID:33603070) UniProt PMID:33603070 NCBI chrNW_004624730:47,963,819...47,992,869
Ensembl chrNW_004624730:47,963,819...47,992,910 		JBrowse link
G Trpm1 transient receptor potential cation channel subfamily M member 1 acts_upstream_of_or_within ISO (PMID:19966281) MGI PMID:19966281 NCBI chrNW_004624768:1,802,601...1,873,627
Ensembl chrNW_004624768:1,757,293...1,873,627 		JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) MGI PMID:36125046 NCBI chrNW_004624750:21,759,412...21,763,608
Ensembl chrNW_004624750:21,759,495...21,766,679 		JBrowse link
G Cntf ciliary neurotrophic factor acts_upstream_of ISO (PMID:15207851) MGI PMID:15207851 NCBI chrNW_004624864:1,785,215...1,788,608
Ensembl chrNW_004624864:1,782,139...1,792,879 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:4,064,982...4,072,172
Ensembl chrNW_004624730:4,066,222...4,071,316 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chrNW_004624772:5,317,702...5,326,841
Ensembl chrNW_004624772:5,318,113...5,326,841 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:11,409,837...11,435,709
Ensembl chrNW_004624762:11,409,727...11,435,811 		JBrowse link
G Ptn pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chrNW_004624765:17,523,086...17,625,264
Ensembl chrNW_004624765:17,522,916...17,548,184 		JBrowse link
G Rorb RAR related orphan receptor B acts_upstream_of_or_within ISO (PMID:25296752) MGI PMID:25296752 NCBI chrNW_004624811:2,076,474...2,281,933
Ensembl chrNW_004624811:2,076,437...2,277,040 		JBrowse link
G Sox8 SRY-box transcription factor 8 acts_upstream_of_or_within ISO (PMID:19490914) MGI PMID:19490914 NCBI chrNW_004624913:1,759,460...1,764,242
Ensembl chrNW_004624913:1,759,548...1,764,344 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:19490914) MGI PMID:19490914 NCBI chrNW_004624801:2,296,353...2,300,853
Ensembl chrNW_004624801:2,296,168...2,301,596 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 acts_upstream_of_or_within ISO (PMID:15207851) MGI PMID:15207851 NCBI chrNW_004624795:1,648,235...1,680,788
Ensembl chrNW_004624795:1,648,080...1,681,200 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chrNW_004624818:2,024,553...2,078,708
Ensembl chrNW_004624818:2,024,461...2,076,551 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17650
    cellular process 17226
      cellular developmental process 4324
        cell differentiation 4323
          neuron differentiation 1655
            photoreceptor cell differentiation 89
              eye photoreceptor cell differentiation + 63
              negative regulation of photoreceptor cell differentiation + 7
              ocellus photoreceptor cell differentiation + 0
              photoreceptor cell development + 66
              photoreceptor cell fate commitment + 3
              positive regulation of photoreceptor cell differentiation + 2
              regulation of photoreceptor cell differentiation + 9
Path 2
Term Annotations click to browse term
  biological_process 17650
    developmental process 6426
      anatomical structure development 6009
        multicellular organism development 4838
          system development 4233
            nervous system development 2679
              neurogenesis 2003
                generation of neurons 1737
                  neuron differentiation 1655
                    photoreceptor cell differentiation 89
                      eye photoreceptor cell differentiation + 63
                      negative regulation of photoreceptor cell differentiation + 7
                      ocellus photoreceptor cell differentiation + 0
                      photoreceptor cell development + 66
                      photoreceptor cell fate commitment + 3
                      positive regulation of photoreceptor cell differentiation + 2
                      regulation of photoreceptor cell differentiation + 9
paths to the root