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ONTOLOGY REPORT - ANNOTATIONS

Term:photoreceptor cell differentiation
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Accession:GO:0046530 term browser browse the term
Definition:The specialization of organization of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light. An example of this process is found in Drosophila melanogaster.
Synonyms:alt_id: GO:0007467


show annotations for term's descendants           Sort by:
photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IMP (PMID:36700052) MGI PMID:36700052 NCBI chr10:111,134,540...111,137,597
Ensembl chr10:111,134,540...111,137,588 		JBrowse link
G Cfh complement component factor h acts_upstream_of_or_within IMP (PMID:26149919), (PMID:30705315) MGI PMID:26149919 PMID:30705315 NCBI chr 1:140,013,593...140,111,149
Ensembl chr 1:140,012,446...140,111,502 		JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within IMP (PMID:27715390) MGI PMID:27715390 NCBI chr 9:110,133,321...110,151,170
Ensembl chr 9:110,134,241...110,151,170 		JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within IMP (PMID:31628468) MGI PMID:31628468 NCBI chr18:77,981,618...78,080,539
Ensembl chr18:77,981,680...78,078,228 		JBrowse link
G Ift56 intraflagellar transport 56 acts_upstream_of_or_within ISO (PMID:22718903) MGI PMID:22718903 NCBI chr 6:38,358,400...38,404,582
Ensembl chr 6:38,358,404...38,404,582 		JBrowse link
camera-type eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated acts_upstream_of_or_within IMP (PMID:15316081) MGI PMID:15316081 NCBI chr 1:139,101,288...139,307,262
Ensembl chr 1:139,124,794...139,304,838 		JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dscam DS cell adhesion molecule involved_in ISS UniProt GO_REF:0000024 NCBI chr16:96,388,652...96,971,935
Ensembl chr16:96,392,040...96,971,952 		JBrowse link
G Prom1 prominin 1 involved_in ISO
IBA
IMP		 (PMID:19228982) GO_Central
UniProt		 PMID:19228982 GO_REF:0000033 GO_REF:0000119 NCBI chr 5:44,150,963...44,260,850
Ensembl chr 5:44,150,962...44,259,374 		JBrowse link
G Rom1 rod outer segment membrane protein 1 acts_upstream_of_or_within IMP (PMID:20300562) MGI PMID:20300562 NCBI chr19:8,904,746...8,906,720
Ensembl chr19:8,904,755...8,906,720 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in IDA (PMID:26287463) UniProt PMID:26287463 NCBI chr11:113,667,200...113,957,855
Ensembl chr11:113,667,200...113,957,872 		JBrowse link
G Slc4a7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 acts_upstream_of_or_within IMP (PMID:12808454) MGI PMID:12808454 NCBI chr14:7,669,819...7,766,808
Ensembl chr14:7,669,823...7,767,484 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within IMP (PMID:21646512) MGI PMID:21646512 NCBI chr12:98,886,796...98,949,509
Ensembl chr12:98,886,833...98,949,497 		JBrowse link
G Vax2os ventral anterior homeobox 2, opposite strand acts_upstream_of_or_within IMP (PMID:22128341) MGI PMID:22128341 NCBI chr 6:83,669,786...83,689,183
Ensembl chr 6:83,669,786...83,689,190 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog acts_upstream_of_or_within IMP (PMID:18582859) MGI PMID:18582859 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in IDA (PMID:20081859) CACAO PMID:20081859 NCBI chr10:20,827,274...20,956,328
Ensembl chr10:20,828,446...20,956,328 		JBrowse link
G Cep290 centrosomal protein 290 involved_in ISS HGNC-UCL GO_REF:0000024 NCBI chr10:100,323,410...100,409,527
Ensembl chr10:100,323,420...100,410,702 		JBrowse link
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated acts_upstream_of_or_within IMP (PMID:12915475)
(PMID:12915475), (PMID:21052544)		 MGI PMID:12915475 PMID:21052544 NCBI chr 1:139,101,288...139,307,262
Ensembl chr 1:139,124,794...139,304,838 		JBrowse link
G Dzank1 double zinc ribbon and ankyrin repeat domains 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:144,312,475...144,369,427
Ensembl chr 2:144,312,477...144,369,334 		JBrowse link
G Fscn2 fascin actin-bundling protein 2 acts_upstream_of_or_within IMP (PMID:16043865) MGI PMID:16043865 NCBI chr11:120,250,991...120,258,999
Ensembl chr11:120,252,360...120,258,994 		JBrowse link
G Gabrr2 gamma-aminobutyric acid type A receptor subunit rho 2 NOT|acts_upstream_of_or_within IMP (PMID:12019334) MGI PMID:12019334 NCBI chr 4:33,057,715...33,095,865
Ensembl chr 4:33,062,999...33,095,865 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IMP (PMID:16249514) MGI PMID:16249514 NCBI chr 9:107,551,636...107,556,833
Ensembl chr 9:107,551,673...107,556,911 		JBrowse link
G Gngt1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 acts_upstream_of_or_within IMP (PMID:18367617) MGI PMID:18367617 NCBI chr 6:3,989,082...3,997,441
Ensembl chr 6:3,993,792...3,997,436 		JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 9:44,013,067...44,020,484
Ensembl chr 9:44,013,026...44,020,484 		JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 9:59,850,054...59,868,117
Ensembl chr 9:59,850,054...59,867,942 		JBrowse link
G Olfm3 olfactomedin 3 involved_in ISO
IEA		 RGD
GO_Central
Ensembl		 PMID:12019210 GO_REF:0000096 GO_REF:0000107 RGD:633402 NCBI chr 3:114,697,727...114,919,413
Ensembl chr 3:114,697,727...114,919,371 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IMP (PMID:12648492) MGI PMID:12648492 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Pdgfb platelet derived growth factor, B polypeptide acts_upstream_of_or_within IMP (PMID:25224828) MGI PMID:25224828 NCBI chr15:79,880,066...79,899,178
Ensembl chr15:79,880,075...79,899,178 		JBrowse link
G Poc5 POC5 centriolar protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:96,524,767...96,553,719
Ensembl chr13:96,524,802...96,554,245 		JBrowse link
G Prdm1 PR domain containing 1, with ZNF domain acts_upstream_of_or_within IMP (PMID:20463215) MGI PMID:20463215 NCBI chr10:44,313,170...44,404,579
Ensembl chr10:44,313,173...44,404,497 		JBrowse link
G Prkci protein kinase C, iota acts_upstream_of_or_within IMP (PMID:16267237) MGI PMID:16267237 NCBI chr 3:31,049,893...31,106,889
Ensembl chr 3:31,049,896...31,107,108 		JBrowse link
G Rdh13 retinol dehydrogenase 13 (all-trans and 9-cis) acts_upstream_of_or_within IMP (PMID:22605914) MGI PMID:22605914 NCBI chr 7:4,428,664...4,474,279
Ensembl chr 7:4,427,769...4,448,648 		JBrowse link
G Rorb RAR-related orphan receptor beta involved_in IMP (PMID:16574740) UniProt PMID:16574740 NCBI chr19:18,907,966...19,088,560
Ensembl chr19:18,907,969...19,088,560 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within IMP (PMID:12651948) MGI PMID:12651948 NCBI chr  X:10,024,455...10,083,034
Ensembl chr  X:9,939,860...10,083,159 		JBrowse link
G Rpgrip1 retinitis pigmentosa GTPase regulator interacting protein 1 acts_upstream_of_or_within IMP (PMID:12651948) MGI PMID:12651948 NCBI chr14:52,341,698...52,398,796
Ensembl chr14:52,348,161...52,401,003 		JBrowse link
G Th tyrosine hydroxylase involved_in IMP (PMID:16445854) BHF-UCL PMID:16445854 NCBI chr 7:142,446,516...142,453,732
Ensembl chr 7:142,446,489...142,484,865 		JBrowse link
G Tulp1 TUB like protein 1 involved_in IMP (PMID:19218615) UniProt PMID:19218615 NCBI chr17:28,570,489...28,584,190
Ensembl chr17:28,570,489...28,584,196 		JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within IMP (PMID:16251428) MGI PMID:16251428 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295 		JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding protein 1 involved_in IMP (PMID:16465590) UniProt PMID:16465590 NCBI chr13:59,597,348...59,705,184
Ensembl chr13:59,593,556...59,733,041 		JBrowse link
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha involved_in ISO GO_Central GO_REF:0000119 NCBI chr 9:100,982,188...101,129,031
Ensembl chr 9:100,982,283...101,128,994 		JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within IMP (PMID:14625556) MGI PMID:14625556 NCBI chr14:48,894,238...48,905,101
Ensembl chr14:48,895,134...48,911,276 		JBrowse link
negative regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cntf ciliary neurotrophic factor acts_upstream_of_or_within IDA (PMID:15207851) MGI PMID:15207851 NCBI chr19:12,740,892...12,742,996
Ensembl chr19:12,741,024...12,742,996 		JBrowse link
G Dlx1 distal-less homeobox 1 involved_in IMP (PMID:21875655) UniProt PMID:21875655 NCBI chr 2:71,358,457...71,364,325
Ensembl chr 2:71,358,457...71,364,325 		JBrowse link
G Dlx2 distal-less homeobox 2 involved_in IMP (PMID:21875655) UniProt PMID:21875655 NCBI chr 2:71,373,752...71,377,095
Ensembl chr 2:71,373,752...71,377,098 		JBrowse link
G Notch1 notch 1 acts_upstream_of_or_within IMP (PMID:16452096) MGI PMID:16452096 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675 		JBrowse link
G Sox8 SRY (sex determining region Y)-box 8 acts_upstream_of_or_within IGI (PMID:19490914) MGI PMID:19490914 NCBI chr17:25,784,865...25,789,666
Ensembl chr17:25,784,634...25,789,726 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 acts_upstream_of_or_within IGI (PMID:19490914) MGI PMID:19490914 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within IMP (PMID:25654255) MGI PMID:25654255 NCBI chr 4:148,888,823...149,039,350
Ensembl chr 4:148,888,886...149,039,346 		JBrowse link
photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl3 ADP-ribosylation factor-like 3 involved_in IMP (PMID:16565502) UniProt PMID:16565502 NCBI chr19:46,519,548...46,561,621
Ensembl chr19:46,519,535...46,561,637 		JBrowse link
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated acts_upstream_of_or_within IMP (PMID:12915475) MGI PMID:12915475 NCBI chr 1:139,101,288...139,307,262
Ensembl chr 1:139,124,794...139,304,838 		JBrowse link
G Fam151b family with sequence similarity 151, member B involved_in IMP (PMID:31949211) UniProt PMID:31949211 NCBI chr13:92,586,128...92,620,539
Ensembl chr13:92,586,133...92,620,523 		JBrowse link
G Rp1 retinitis pigmentosa 1 (human) involved_in IBA
IMP		 (PMID:16126734) GO_Central
UniProt		 PMID:16126734 GO_REF:0000033 NCBI chr 1:4,185,896...4,479,508
Ensembl chr 1:4,069,780...4,479,464 		JBrowse link
G Rp1l1 retinitis pigmentosa 1 homolog like 1 involved_in IBA
IMP		 (PMID:19657028) GO_Central
UniProt		 PMID:19657028 GO_REF:0000033 NCBI chr14:64,229,880...64,270,955
Ensembl chr14:64,229,955...64,272,474 		JBrowse link
G Tug1 taurine upregulated gene 1 acts_upstream_of_or_within IMP (PMID:15797018) MGI PMID:15797018 NCBI chr11:3,589,313...3,599,021
Ensembl chr11:3,589,785...3,599,673 		JBrowse link
photoreceptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within IMP (PMID:18032602) MGI PMID:18032602 NCBI chr19:4,936,906...4,956,681
Ensembl chr19:4,936,906...4,956,656 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within IMP (PMID:16249514) MGI PMID:16249514 NCBI chr19:4,185,422...4,189,608
Ensembl chr19:4,185,422...4,194,032 		JBrowse link
G Cdhr1 cadherin-related family member 1 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr14:36,799,806...36,820,304
Ensembl chr14:36,799,814...36,820,304 		JBrowse link
G Cfap418 cilia and flagella associated protein 418 involved_in IMP (PMID:29440555) UniProt PMID:29440555 NCBI chr 4:10,874,249...10,899,425
Ensembl chr 4:10,874,498...10,899,425 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within IMP (PMID:10097103) MGI PMID:10097103 NCBI chr 8:13,455,081...13,471,951
Ensembl chr 8:13,455,081...13,471,951 		JBrowse link
G Ift56 intraflagellar transport 56 acts_upstream_of_or_within ISO (PMID:22718903) MGI PMID:22718903 NCBI chr 6:38,358,400...38,404,582
Ensembl chr 6:38,358,404...38,404,582 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within IMP (PMID:27008858) ARUK-UCL PMID:27008858 NCBI chr 4:122,840,643...122,855,844
Ensembl chr 4:122,840,643...122,854,981 		JBrowse link
G Rabl2 RAB, member RAS oncogene family-like 2 involved_in IMP (PMID:28625565) UniProt PMID:28625565 NCBI chr15:89,466,730...89,476,126
Ensembl chr15:89,466,736...89,476,126 		JBrowse link
photoreceptor cell outer segment organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 acts_upstream_of_or_within
involved_in		 IMP
IGI		 (PMID:20592197)
(PMID:20081859)		 MGI
UniProt		 PMID:20081859 PMID:20592197 NCBI chr10:20,827,274...20,956,328
Ensembl chr10:20,828,446...20,956,328 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within IMP (PMID:23178122) MGI PMID:23178122 NCBI chr 9:59,229,249...59,260,791
Ensembl chr 9:59,229,273...59,260,791 		JBrowse link
G Cdhr1 cadherin-related family member 1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr14:36,799,806...36,820,304
Ensembl chr14:36,799,814...36,820,304 		JBrowse link
G Cngb1 cyclic nucleotide gated channel beta 1 acts_upstream_of_or_within IMP (PMID:23178122) MGI PMID:23178122 NCBI chr 8:95,965,671...96,033,213
Ensembl chr 8:95,965,673...96,033,213 		JBrowse link
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated acts_upstream_of_or_within IMP (PMID:12915475) MGI PMID:12915475 NCBI chr 1:139,101,288...139,307,262
Ensembl chr 1:139,124,794...139,304,838 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within IMP (PMID:24619649) MGI PMID:24619649 NCBI chr17:25,235,056...25,318,461
Ensembl chr17:25,235,059...25,318,469 		JBrowse link
G Ift20 intraflagellar transport 20 acts_upstream_of_or_within IMP (PMID:21307337) MGI PMID:21307337 NCBI chr11:78,427,187...78,432,558
Ensembl chr11:78,427,187...78,432,563 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within IMP (PMID:27008858) ARUK-UCL PMID:27008858 NCBI chr 4:122,840,643...122,855,844
Ensembl chr 4:122,840,643...122,854,981 		JBrowse link
G Nphp1 nephronophthisis 1 (juvenile) homolog (human) involved_in IGI (PMID:20081859) UniProt PMID:20081859 NCBI chr 2:127,582,652...127,630,833
Ensembl chr 2:127,582,652...127,630,817 		JBrowse link
G Nphp4 nephronophthisis 4 (juvenile) homolog (human) acts_upstream_of_or_within IMP (PMID:21078623) MGI PMID:21078623 NCBI chr 4:152,561,163...152,647,641
Ensembl chr 4:152,561,163...152,647,640 		JBrowse link
G Pcare photoreceptor cilium actin regulator involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:25616964) GO_Central
MGI		 PMID:25616964 GO_REF:0000033 NCBI chr17:72,050,919...72,059,904
Ensembl chr17:72,050,550...72,059,889 		JBrowse link
G Prph2 peripherin 2 acts_upstream_of_or_within IMP
IGI		 (PMID:28053051) MGI PMID:28053051 NCBI chr17:47,221,404...47,235,859
Ensembl chr17:47,221,385...47,235,859 		JBrowse link
G Rom1 rod outer segment membrane protein 1 acts_upstream_of_or_within IMP
IGI		 (PMID:28053051) MGI PMID:28053051 NCBI chr19:8,904,746...8,906,720
Ensembl chr19:8,904,755...8,906,720 		JBrowse link
G Rp1 retinitis pigmentosa 1 (human) involved_in IDA (PMID:14507858) UniProt PMID:14507858 NCBI chr 1:4,185,896...4,479,508
Ensembl chr 1:4,069,780...4,479,464 		JBrowse link
G Tmem67 transmembrane protein 67 involved_in ISO RGD
GO_Central		 PMID:23516626 GO_REF:0000096 RGD:11535084 NCBI chr 4:12,039,355...12,090,020
Ensembl chr 4:12,039,363...12,090,020 		JBrowse link
positive regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crx cone-rod homeobox ISO RGD PMID:16799048 RGD:1600973 NCBI chr 7:15,599,872...15,613,880
Ensembl chr 7:15,599,872...15,613,893 		JBrowse link
G Shh sonic hedgehog involved_in ISO RGD
GO_Central		 PMID:9236238 GO_REF:0000096 RGD:2306313 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3os1 SIX homeobox 3, opposite strand 1 acts_upstream_of_or_within IDA
IMP		 (PMID:21936910) MGI PMID:21936910 NCBI chr17:85,909,360...85,925,824
Ensembl chr17:85,908,079...85,926,066 		JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in IMP (PMID:20081859) CACAO PMID:20081859 NCBI chr10:20,827,274...20,956,328
Ensembl chr10:20,828,446...20,956,328 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within IMP (PMID:16249514) MGI PMID:16249514 NCBI chr19:4,185,422...4,189,608
Ensembl chr19:4,185,422...4,194,032 		JBrowse link
G Cnga3 cyclic nucleotide gated channel alpha 3 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 1:37,257,317...37,302,465
Ensembl chr 1:37,253,515...37,302,465 		JBrowse link
G Crb2 crumbs family member 2 involved_in IMP (PMID:23001562) UniProt PMID:23001562 NCBI chr 2:37,666,238...37,689,115
Ensembl chr 2:37,666,261...37,689,115 		JBrowse link
G Dio3 deiodinase, iodothyronine type III acts_upstream_of_or_within IMP (PMID:20203194) MGI PMID:20203194 NCBI chr12:110,245,664...110,247,531
Ensembl chr12:110,245,502...110,247,531 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IMP (PMID:17065522), (PMID:21052544) MGI PMID:17065522 PMID:21052544 NCBI chr 3:107,994,120...108,008,748
Ensembl chr 3:108,000,105...108,008,748 		JBrowse link
G Hcn1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr13:117,738,856...118,117,564
Ensembl chr13:117,738,856...118,123,954 		JBrowse link
G Mir124a-1 microRNA 124a-1 acts_upstream_of_or_within IGI
IMP		 (PMID:21857657) MGI PMID:21857657 NCBI chr14:64,828,106...64,828,190
Ensembl chr14:64,828,106...64,828,190 		JBrowse link
G Mir124a-2 microRNA 124a-2 acts_upstream_of_or_within IGI (PMID:21857657) MGI PMID:21857657 NCBI chr 3:17,849,826...17,849,934
Ensembl chr 3:17,849,826...17,849,934 		JBrowse link
G Mir182 microRNA 182 acts_upstream_of_or_within IGI (PMID:23341629) MGI PMID:23341629 NCBI chr 6:30,165,917...30,165,991
Ensembl chr 6:30,165,917...30,165,991 		JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within IGI (PMID:23341629) MGI PMID:23341629 NCBI chr 6:30,169,667...30,169,736
Ensembl chr 6:30,169,667...30,169,736 		JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within IGI (PMID:23341629) MGI PMID:23341629 NCBI chr 6:30,169,445...30,169,550
Ensembl chr 6:30,169,445...30,169,550 		JBrowse link
G Pde6c phosphodiesterase 6C, cGMP specific, cone, alpha prime acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr19:38,121,220...38,172,391
Ensembl chr19:38,121,229...38,172,406 		JBrowse link
G Rorb RAR-related orphan receptor beta involved_in IDA (PMID:16574740) UniProt PMID:16574740 NCBI chr19:18,907,966...19,088,560
Ensembl chr19:18,907,969...19,088,560 		JBrowse link
G Rp1 retinitis pigmentosa 1 (human) involved_in IDA (PMID:14507858) UniProt PMID:14507858 NCBI chr 1:4,185,896...4,479,508
Ensembl chr 1:4,069,780...4,479,464 		JBrowse link
G Thrb thyroid hormone receptor beta acts_upstream_of IMP (PMID:20203194) MGI PMID:20203194 NCBI chr14:4,429,599...4,810,538
Ensembl chr14:4,431,611...4,809,435 		JBrowse link
G Thy1 thymus cell antigen 1, theta involved_in IMP (PMID:10567740) UniProt PMID:10567740 NCBI chr 9:43,954,681...43,959,876
Ensembl chr 9:43,954,681...43,959,876 		JBrowse link
G Ush1c USH1 protein network component harmonin involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:45,844,774...45,887,984
Ensembl chr 7:45,844,774...45,887,927 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IMP (PMID:36125046) MGI PMID:36125046 NCBI chr10:111,134,540...111,137,597
Ensembl chr10:111,134,540...111,137,588 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IMP
IGI
IDA		 (PMID:19815523) MGI PMID:19815523 NCBI chr 9:107,551,636...107,556,833
Ensembl chr 9:107,551,673...107,556,911 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IGI
IDA
IMP		 (PMID:19815523) MGI PMID:19815523 NCBI chr 3:107,994,120...108,008,748
Ensembl chr 3:108,000,105...108,008,748 		JBrowse link
G Notch1 notch 1 acts_upstream_of IMP (PMID:16452096) MGI PMID:16452096 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675 		JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in IMP (PMID:20081859) CACAO PMID:20081859 NCBI chr10:20,827,274...20,956,328
Ensembl chr10:20,828,446...20,956,328 		JBrowse link
G Alms1 ALMS1, centrosome and basal body associated acts_upstream_of_or_within IMP (PMID:16000322) MGI PMID:16000322 NCBI chr 6:85,564,482...85,698,973
Ensembl chr 6:85,564,513...85,679,735 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within IMP (PMID:15173597) MGI PMID:15173597 NCBI chr 9:59,229,249...59,260,791
Ensembl chr 9:59,229,273...59,260,791 		JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within IMP (PMID:17255172) MGI PMID:17255172 NCBI chr 2:180,416,174...180,418,693
Ensembl chr 2:180,416,174...180,418,693 		JBrowse link
G Cfh complement component factor h acts_upstream_of_or_within IMP (PMID:17921253) MGI PMID:17921253 NCBI chr 1:140,013,593...140,111,149
Ensembl chr 1:140,012,446...140,111,502 		JBrowse link
G Miat myocardial infarction associated transcript (non-protein coding) acts_upstream_of_or_within IMP (PMID:16877424) MGI PMID:16877424 NCBI chr 5:112,361,094...112,376,814
Ensembl chr 5:112,361,094...112,377,261 		JBrowse link
G Naglu alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB) acts_upstream_of_or_within IMP (PMID:17712420) MGI PMID:17712420 NCBI chr11:100,960,918...100,968,483
Ensembl chr11:100,960,838...100,968,498 		JBrowse link
G Nrl neural retina leucine zipper gene acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:11694879) MGI
GO_Central		 PMID:11694879 GO_REF:0000033 NCBI chr14:55,756,973...55,762,438
Ensembl chr14:55,756,435...55,762,438 		JBrowse link
G Ntrk2 neurotrophic tyrosine kinase, receptor, type 2 acts_upstream_of_or_within IMP (PMID:10516311) MGI PMID:10516311 NCBI chr13:58,954,363...59,281,782
Ensembl chr13:58,954,383...59,281,784 		JBrowse link
G Rorb RAR-related orphan receptor beta involved_in IMP (PMID:16574740), (PMID:19805139) UniProt PMID:16574740 PMID:19805139 NCBI chr19:18,907,966...19,088,560
Ensembl chr19:18,907,969...19,088,560 		JBrowse link
G Rp1 retinitis pigmentosa 1 (human) involved_in IDA (PMID:14507858) UniProt PMID:14507858 NCBI chr 1:4,185,896...4,479,508
Ensembl chr 1:4,069,780...4,479,464 		JBrowse link
G Rpgrip1 retinitis pigmentosa GTPase regulator interacting protein 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:52,341,698...52,398,796
Ensembl chr14:52,348,161...52,401,003 		JBrowse link
G Rpgrip1l Rpgrip1-like involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:91,943,658...92,039,919
Ensembl chr 8:91,943,658...92,039,890 		JBrowse link
G Samd11 sterile alpha motif domain containing 11 involved_in IMP (PMID:33603070) UniProt PMID:33603070 NCBI chr 4:156,331,423...156,342,409
Ensembl chr 4:156,331,423...156,340,717 		JBrowse link
G Samd7 sterile alpha motif domain containing 7 involved_in IMP (PMID:33603070) UniProt PMID:33603070 NCBI chr 3:30,800,481...30,821,323
Ensembl chr 3:30,800,442...30,821,323 		JBrowse link
G Trpm1 transient receptor potential cation channel, subfamily M, member 1 acts_upstream_of_or_within IMP (PMID:19966281) MGI PMID:19966281 NCBI chr 7:63,803,583...63,923,630
Ensembl chr 7:63,803,583...63,919,523 		JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IMP (PMID:36125046) MGI PMID:36125046 NCBI chr10:111,134,540...111,137,597
Ensembl chr10:111,134,540...111,137,588 		JBrowse link
G Cntf ciliary neurotrophic factor acts_upstream_of IDA (PMID:15207851) MGI PMID:15207851 NCBI chr19:12,740,892...12,742,996
Ensembl chr19:12,741,024...12,742,996 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IGI
IMP
IDA		 (PMID:19815523) MGI PMID:19815523 NCBI chr 9:107,551,636...107,556,833
Ensembl chr 9:107,551,673...107,556,911 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IGI
IDA
IMP		 (PMID:19815523) MGI PMID:19815523 NCBI chr 3:107,994,120...108,008,748
Ensembl chr 3:108,000,105...108,008,748 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IMP (PMID:9071226) MGI PMID:9071226 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
G Ptn pleiotrophin involved_in ISO RGD
GO_Central		 PMID:16914133 GO_REF:0000096 RGD:9831439 NCBI chr 6:36,691,863...36,787,114
Ensembl chr 6:36,691,864...36,787,155 		JBrowse link
G Rorb RAR-related orphan receptor beta acts_upstream_of_or_within IMP (PMID:25296752) MGI PMID:25296752 NCBI chr19:18,907,966...19,088,560
Ensembl chr19:18,907,969...19,088,560 		JBrowse link
G Sox8 SRY (sex determining region Y)-box 8 acts_upstream_of
acts_upstream_of_or_within		 IGI (PMID:19490914) MGI PMID:19490914 NCBI chr17:25,784,865...25,789,666
Ensembl chr17:25,784,634...25,789,726 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 acts_upstream_of_or_within IGI (PMID:19490914) MGI PMID:19490914 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 acts_upstream_of_or_within IMP (PMID:15207851) MGI PMID:15207851 NCBI chr11:100,777,632...100,830,447
Ensembl chr11:100,775,924...100,830,366 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within IMP
IDA		 (PMID:25654255) MGI PMID:25654255 NCBI chr 4:148,888,823...149,039,350
Ensembl chr 4:148,888,886...149,039,346 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28640
    cellular process 18404
      cellular developmental process 5187
        cell differentiation 5186
          neuron differentiation 1774
            photoreceptor cell differentiation 97
              eye photoreceptor cell differentiation + 71
              negative regulation of photoreceptor cell differentiation + 7
              ocellus photoreceptor cell differentiation + 0
              photoreceptor cell development + 71
              photoreceptor cell fate commitment + 3
              positive regulation of photoreceptor cell differentiation + 2
              regulation of photoreceptor cell differentiation + 10
Path 2
Term Annotations click to browse term
  biological_process 28640
    developmental process 7547
      anatomical structure development 7011
        multicellular organism development 5580
          system development 4800
            nervous system development 2942
              neurogenesis 2164
                generation of neurons 1855
                  neuron differentiation 1774
                    photoreceptor cell differentiation 97
                      eye photoreceptor cell differentiation + 71
                      negative regulation of photoreceptor cell differentiation + 7
                      ocellus photoreceptor cell differentiation + 0
                      photoreceptor cell development + 71
                      photoreceptor cell fate commitment + 3
                      positive regulation of photoreceptor cell differentiation + 2
                      regulation of photoreceptor cell differentiation + 10
paths to the root