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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor cell differentiation
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Accession:GO:0046530 term browser browse the term
Definition:The specialization of organization of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light. An example of this process is found in Drosophila melanogaster.
Synonyms:alt_id: GO:0007467


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photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfh complement component factor h IMP (MGI:5796739|PMID:26149919), (MGI:6304909|PMID:30705315) MGI PMID:26149919, PMID:30705315 MGI:5796739, MGI:6304909 NCBI chr 1:140,085,855...140,183,411
Ensembl chr 1:140,084,708...140,183,764
JBrowse link
G Ttc26 tetratricopeptide repeat domain 26 ISO (MGI:5448494|PMID:22718903) MGI PMID:22718903 MGI:5448494 NCBI chr 6:38,381,464...38,427,647
Ensembl chr 6:38,381,469...38,427,647
JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prom1 prominin 1 IBA
IMP
ISO
(MGI:6201960|PMID:21873635)
(MGI:3838023|PMID:19228982)
GO_Central
UniProt
MGI
PMID:19228982, PMID:21873635 GO_REF:0000096, MGI:3838023, MGI:4834177, MGI:6201960 NCBI chr 5:43,993,621...44,102,047
Ensembl chr 5:43,993,620...44,102,032
JBrowse link
G Rom1 rod outer segment membrane protein 1 IMP (MGI:4437581|PMID:20300562) MGI PMID:20300562 MGI:4437581 NCBI chr19:8,927,382...8,929,356
Ensembl chr19:8,927,391...8,929,356
JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 IDA (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chr11:113,776,374...114,067,029
Ensembl chr11:113,776,374...114,067,046
JBrowse link
G Slc4a7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 IMP (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chr14:14,703,011...14,799,944
Ensembl chr14:14,702,279...14,799,940
JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 IMP (MGI:5014119|PMID:21646512) MGI PMID:21646512 MGI:5014119 NCBI chr12:98,920,537...98,983,250
Ensembl chr12:98,920,574...98,983,238
JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog IMP (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chr 1:74,945,315...74,951,672
Ensembl chr 1:74,945,315...74,951,672
JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 IDA (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr10:20,952,232...21,080,429
Ensembl chr10:20,952,547...21,080,429
JBrowse link
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated IMP (MGI:2675211|PMID:12915475)
(MGI:4849309|PMID:21052544)
MGI PMID:12915475, PMID:21052544 MGI:2675211, MGI:4849309 NCBI chr 1:139,176,649...139,379,316
Ensembl chr 1:139,197,056...139,377,100
JBrowse link
G Fscn2 fascin actin-bundling protein 2 IMP (MGI:3610644|PMID:16043865) MGI PMID:16043865 MGI:3610644 NCBI chr11:120,360,165...120,368,173
Ensembl chr11:120,361,534...120,368,168
JBrowse link
G Gabrr2 gamma-aminobutyric acid (GABA) C receptor, subunit rho 2 NOT IMP (MGI:2179933|PMID:12019334) MGI PMID:12019334 MGI:2179933 NCBI chr 4:33,057,712...33,095,865
Ensembl chr 4:33,062,999...33,095,865
JBrowse link
G Gnat1 guanine nucleotide binding protein, alpha transducing 1 IMP (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chr 9:107,674,437...107,679,634
Ensembl chr 9:107,674,474...107,679,712
JBrowse link
G Gngt1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 IMP (MGI:3778702|PMID:18367617) MGI PMID:18367617 MGI:3778702 NCBI chr 6:3,989,082...3,997,436
Ensembl chr 6:3,993,792...3,997,436
JBrowse link
G Mfrp membrane frizzled-related protein IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 9:44,101,770...44,109,187
Ensembl chr 9:44,101,729...44,109,187
JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 9:59,942,771...59,960,834
Ensembl chr 9:59,942,771...59,960,659
JBrowse link
G Olfm3 olfactomedin 3 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 3:114,904,078...115,125,764
Ensembl chr 3:114,904,078...115,125,722
JBrowse link
G Pax6 paired box 6 IMP (MGI:2654287|PMID:12648492) MGI PMID:12648492 MGI:2654287 NCBI chr 2:105,668,896...105,698,410
Ensembl chr 2:105,668,900...105,697,364
JBrowse link
G Pdgfb platelet derived growth factor, B polypeptide IMP (MGI:5607451|PMID:25224828) MGI PMID:25224828 MGI:5607451 NCBI chr15:79,995,865...80,024,614
Ensembl chr15:79,995,874...80,014,977
JBrowse link
G Prdm1 PR domain containing 1, with ZNF domain IMP (MGI:4454584|PMID:20463215) MGI PMID:20463215 MGI:4454584 NCBI chr10:44,437,174...44,528,558
Ensembl chr10:44,437,177...44,528,501
JBrowse link
G Prkci protein kinase C, iota IMP (MGI:3607414|PMID:16267237) MGI PMID:16267237 MGI:3607414 NCBI chr 3:30,995,742...31,052,740
Ensembl chr 3:30,995,747...31,052,959
JBrowse link
G Rdh13 retinol dehydrogenase 13 (all-trans and 9-cis) IMP (MGI:5462166|PMID:22605914) MGI PMID:22605914 MGI:5462166 NCBI chr 7:4,425,665...4,471,280
Ensembl chr 7:4,424,770...4,445,649
JBrowse link
G Rorb RAR-related orphan receptor beta IMP (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chr19:18,930,609...19,111,196
Ensembl chr19:18,930,605...19,111,196
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator IMP (MGI:2654998|PMID:12651948) MGI PMID:12651948 MGI:2654998 NCBI chr  X:10,158,216...10,216,795
Ensembl chr  X:10,073,621...10,216,920
JBrowse link
G Rpgrip1 retinitis pigmentosa GTPase regulator interacting protein 1 IMP (MGI:2654998|PMID:12651948) MGI PMID:12651948 MGI:2654998 NCBI chr14:52,104,241...52,161,339
Ensembl chr14:52,110,704...52,163,546
JBrowse link
G Th tyrosine hydroxylase IMP (MGI:3617102|PMID:16445854) BHF-UCL PMID:16445854 MGI:3617102 NCBI chr 7:142,892,779...142,899,995
Ensembl chr 7:142,892,752...142,931,128
JBrowse link
G Tulp1 tubby like protein 1 IMP (MGI:4397555|PMID:19218615) UniProt PMID:19218615 MGI:4397555 NCBI chr17:28,351,515...28,365,216
Ensembl chr17:28,351,515...28,365,222
JBrowse link
G Vegfa vascular endothelial growth factor A IMP (MGI:3607459|PMID:16251428) MGI PMID:16251428 MGI:3607459 NCBI chr17:46,016,993...46,032,377
Ensembl chr17:46,016,993...46,032,369
JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding protein 1 IMP (MGI:3614720|PMID:16465590) UniProt PMID:16465590 MGI:3614720 NCBI chr13:59,449,534...59,557,370
Ensembl chr13:59,445,742...59,585,227
JBrowse link
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 9:101,104,989...101,251,832
Ensembl chr 9:101,105,084...101,251,795
JBrowse link
G Stat3 signal transducer and activator of transcription 3 IMP (MGI:3045481|PMID:15207851) MGI PMID:15207851 MGI:3045481 NCBI chr11:100,886,806...100,939,594
Ensembl chr11:100,885,098...100,939,540
JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 IMP (MGI:2680889|PMID:14625556) MGI PMID:14625556 MGI:2680889 NCBI chr14:48,656,781...48,667,644
Ensembl chr14:48,657,677...48,673,819
JBrowse link
negative regulation of eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dio3 deiodinase, iodothyronine type III IMP (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chr12:110,279,230...110,281,097
Ensembl chr12:110,279,068...110,281,097
JBrowse link
G Thrb thyroid hormone receptor beta IMP (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chr14:17,659,225...18,040,097
Ensembl chr14:17,660,261...18,038,090
JBrowse link
negative regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cntf ciliary neurotrophic factor IDA (MGI:3045481|PMID:15207851) MGI PMID:15207851 MGI:3045481 NCBI chr19:12,763,528...12,765,632
Ensembl chr19:12,763,660...12,765,632
JBrowse link
G Dlx1 distal-less homeobox 1 IMP (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chr 2:71,528,113...71,533,981
Ensembl chr 2:71,528,113...71,533,981
JBrowse link
G Dlx2 distal-less homeobox 2 IMP (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chr 2:71,543,408...71,546,754
Ensembl chr 2:71,543,408...71,546,754
JBrowse link
G Notch1 notch 1 IMP (MGI:3617079|PMID:16452096) MGI PMID:16452096 MGI:3617079 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
G Sox8 SRY (sex determining region Y)-box 8 IGI (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chr17:25,565,893...25,570,686
Ensembl chr17:25,565,892...25,570,686
JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 IGI (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chr11:112,782,210...112,787,757
Ensembl chr11:112,782,224...112,787,760
JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 IMP (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 4:148,804,366...148,954,893
Ensembl chr 4:148,804,429...148,954,889
JBrowse link
photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl3 ADP-ribosylation factor-like 3 IMP (MGI:3620864|PMID:16565502) UniProt PMID:16565502 MGI:3620864 NCBI chr19:46,531,109...46,573,182
Ensembl chr19:46,531,096...46,573,198
JBrowse link
G Dcx doublecortin IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:143,855,842...143,933,396
Ensembl chr  X:143,855,842...143,933,311
JBrowse link
G Rp1 retinitis pigmentosa 1 (human) IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3604930|PMID:16126734)
GO_Central
UniProt
PMID:16126734, PMID:21873635 MGI:3604930, MGI:6201960 NCBI chr 1:4,115,673...4,409,266
Ensembl chr 1:3,999,557...4,409,241
JBrowse link
G Rp1l1 retinitis pigmentosa 1 homolog like 1 IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:4353917|PMID:19657028)
GO_Central
UniProt
PMID:19657028, PMID:21873635 MGI:4353917, MGI:6201960 NCBI chr14:63,992,431...64,033,506
Ensembl chr14:63,992,506...64,035,025
JBrowse link
G Tug1 taurine upregulated gene 1 IMP (MGI:3574244|PMID:15797018) MGI PMID:15797018 MGI:3574244 NCBI chr11:3,639,785...3,648,814
Ensembl chr11:3,639,785...3,649,673
JBrowse link
photoreceptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 2610301B20Rik RIKEN cDNA 2610301B20 gene IMP (MGI:6148650|PMID:29440555) UniProt PMID:29440555 MGI:6148650 NCBI chr 4:10,874,044...10,899,425
Ensembl chr 4:10,874,498...10,899,425
JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 (human) IMP (MGI:3767384|PMID:18032602) MGI PMID:18032602 MGI:3767384 NCBI chr19:4,886,878...4,906,653
Ensembl chr19:4,886,878...4,906,628
JBrowse link
G Cabp4 calcium binding protein 4 IMP (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chr19:4,135,423...4,144,080
Ensembl chr19:4,135,423...4,144,033
JBrowse link
G Cdhr1 cadherin-related family member 1 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr14:37,077,849...37,098,347
Ensembl chr14:37,077,857...37,098,347
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 IMP (MGI:1334014|PMID:10097103) MGI PMID:10097103 MGI:1334014 NCBI chr 8:13,405,081...13,421,951
Ensembl chr 8:13,405,081...13,421,951
JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A IMP (MGI:5789479|PMID:27008858) ARUK-UCL PMID:27008858 MGI:5789479 NCBI chr 4:122,946,850...122,961,194
Ensembl chr 4:122,946,850...122,961,188
JBrowse link
G Rabl2 RAB, member RAS oncogene family-like 2 IMP (MGI:6094395|PMID:28625565) UniProt PMID:28625565 MGI:6094395 NCBI chr15:89,582,527...89,591,960
Ensembl chr15:89,582,533...89,591,923
JBrowse link
G Ttc26 tetratricopeptide repeat domain 26 ISO (MGI:5448494|PMID:22718903) MGI PMID:22718903 MGI:5448494 NCBI chr 6:38,381,464...38,427,647
Ensembl chr 6:38,381,469...38,427,647
JBrowse link
photoreceptor cell outer segment organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 IMP
IGI
(MGI:4461813|PMID:20592197)
(MGI:4437526|PMID:20081859)
MGI
UniProt
PMID:20081859, PMID:20592197 MGI:4437526, MGI:4461813 NCBI chr10:20,952,232...21,080,429
Ensembl chr10:20,952,547...21,080,429
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 (human) IMP (MGI:5467890|PMID:23178122) MGI PMID:23178122 MGI:5467890 NCBI chr 9:59,321,966...59,353,508
Ensembl chr 9:59,321,990...59,353,508
JBrowse link
G Cdhr1 cadherin-related family member 1 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr14:37,077,849...37,098,347
Ensembl chr14:37,077,857...37,098,347
JBrowse link
G Cngb1 cyclic nucleotide gated channel beta 1 IMP (MGI:5467890|PMID:23178122) MGI PMID:23178122 MGI:5467890 NCBI chr 8:95,239,043...95,306,585
Ensembl chr 8:95,239,045...95,306,585
JBrowse link
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated IMP (MGI:2675211|PMID:12915475) MGI PMID:12915475 MGI:2675211 NCBI chr 1:139,176,649...139,379,316
Ensembl chr 1:139,197,056...139,377,100
JBrowse link
G Ift140 intraflagellar transport 140 IMP (MGI:5604762|PMID:24619649) MGI PMID:24619649 MGI:5604762 NCBI chr17:25,016,083...25,099,499
Ensembl chr17:25,016,085...25,099,495
JBrowse link
G Ift20 intraflagellar transport 20 IMP (MGI:5317282|PMID:21307337) MGI PMID:21307337 MGI:5317282 NCBI chr11:78,536,361...78,541,732
Ensembl chr11:78,536,361...78,541,737
JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A IMP (MGI:5789479|PMID:27008858) ARUK-UCL PMID:27008858 MGI:5789479 NCBI chr 4:122,946,850...122,961,194
Ensembl chr 4:122,946,850...122,961,188
JBrowse link
G Nphp1 nephronophthisis 1 (juvenile) homolog (human) IGI (MGI:4437526|PMID:20081859) UniProt PMID:20081859 MGI:4437526 NCBI chr 2:127,740,732...127,788,913
Ensembl chr 2:127,740,732...127,788,897
JBrowse link
G Nphp4 nephronophthisis 4 (juvenile) homolog (human) IMP (MGI:4867588|PMID:21078623) MGI PMID:21078623 MGI:4867588 NCBI chr 4:152,476,706...152,563,184
Ensembl chr 4:152,476,706...152,563,183
JBrowse link
G Pcare photoreceptor cilium actin regulator IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:5636574|PMID:25616964)
GO_Central
MGI
PMID:21873635, PMID:25616964 MGI:5636574, MGI:6201960 NCBI chr17:71,743,555...71,752,905
Ensembl chr17:71,743,555...71,752,894
JBrowse link
G Prph2 peripherin 2 IMP
IGI
(MGI:5905515|PMID:28053051) MGI PMID:28053051 MGI:5905515 NCBI chr17:46,910,478...46,924,933
Ensembl chr17:46,910,459...46,924,933
JBrowse link
G Rom1 rod outer segment membrane protein 1 IMP
IGI
(MGI:5905515|PMID:28053051) MGI PMID:28053051 MGI:5905515 NCBI chr19:8,927,382...8,929,356
Ensembl chr19:8,927,391...8,929,356
JBrowse link
G Rp1 retinitis pigmentosa 1 (human) IDA (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chr 1:4,115,673...4,409,266
Ensembl chr 1:3,999,557...4,409,241
JBrowse link
G Tmem67 transmembrane protein 67 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 4:12,039,355...12,090,020
Ensembl chr 4:12,039,355...12,090,020
JBrowse link
positive regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crx cone-rod homeobox ISO RGD PMID:16799048 RGD:1600973 NCBI chr 7:15,865,947...15,879,955
Ensembl chr 7:15,865,947...15,879,968
JBrowse link
G Shh sonic hedgehog ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3os1 SIX homeobox 3, opposite strand 1 IMP
IDA
(MGI:5294273|PMID:21936910) MGI PMID:21936910 MGI:5294273 NCBI chr17:85,601,932...85,618,396
Ensembl chr17:85,600,651...85,618,398
JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 IMP (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr10:20,952,232...21,080,429
Ensembl chr10:20,952,547...21,080,429
JBrowse link
G Cabp4 calcium binding protein 4 IMP (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chr19:4,135,423...4,144,080
Ensembl chr19:4,135,423...4,144,033
JBrowse link
G Cnga3 cyclic nucleotide gated channel alpha 3 IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 1:37,218,241...37,263,384
Ensembl chr 1:37,214,434...37,263,384
JBrowse link
G Dio3 deiodinase, iodothyronine type III IMP (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chr12:110,279,230...110,281,097
Ensembl chr12:110,279,068...110,281,097
JBrowse link
G Gnat2 guanine nucleotide binding protein, alpha transducing 2 IMP (MGI:3714271|PMID:17065522), (MGI:4849309|PMID:21052544) MGI PMID:17065522, PMID:21052544 MGI:3714271, MGI:4849309 NCBI chr 3:108,086,788...108,101,432
Ensembl chr 3:108,092,789...108,101,432
JBrowse link
G Hcn1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr13:117,602,320...117,981,028
Ensembl chr13:117,602,320...117,987,418
JBrowse link
G Mir124a-1 microRNA 124a-1 IMP
IGI
(MGI:5303045|PMID:21857657) MGI PMID:21857657 MGI:5303045 NCBI chr14:64,590,657...64,590,741
Ensembl chr14:64,590,657...64,590,741
JBrowse link
G Mir124a-2 microRNA 124a-2 IGI (MGI:5303045|PMID:21857657) MGI PMID:21857657 MGI:5303045 NCBI chr 3:17,795,662...17,795,770
Ensembl chr 3:17,795,662...17,795,770
JBrowse link
G Mir182 microRNA 182 IGI (MGI:5469752|PMID:23341629) MGI PMID:23341629 MGI:5469752 NCBI chr 6:30,165,918...30,165,992
Ensembl chr 6:30,165,918...30,165,992
JBrowse link
G Mir183 microRNA 183 IGI (MGI:5469752|PMID:23341629) MGI PMID:23341629 MGI:5469752 NCBI chr 6:30,169,668...30,169,737
Ensembl chr 6:30,169,668...30,169,737
JBrowse link
G Mir96 microRNA 96 IGI (MGI:5469752|PMID:23341629) MGI PMID:23341629 MGI:5469752 NCBI chr 6:30,169,446...30,169,551
Ensembl chr 6:30,169,446...30,169,551
JBrowse link
G Pde6c phosphodiesterase 6C, cGMP specific, cone, alpha prime IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr19:38,132,781...38,183,955
Ensembl chr19:38,132,781...38,183,958
JBrowse link
G Rorb RAR-related orphan receptor beta IDA (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chr19:18,930,609...19,111,196
Ensembl chr19:18,930,605...19,111,196
JBrowse link
G Rp1 retinitis pigmentosa 1 (human) IDA (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chr 1:4,115,673...4,409,266
Ensembl chr 1:3,999,557...4,409,241
JBrowse link
G Thrb thyroid hormone receptor beta IMP (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chr14:17,659,225...18,040,097
Ensembl chr14:17,660,261...18,038,090
JBrowse link
G Thy1 thymus cell antigen 1, theta IMP
IBA
(MGI:1349255|PMID:10567740)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:10567740, PMID:21873635 MGI:1349255, MGI:6201960 NCBI chr 9:44,043,384...44,048,579
Ensembl chr 9:44,043,384...44,048,579
JBrowse link
G Ush1c USH1 protein network component harmonin IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 7:46,195,350...46,238,490
Ensembl chr 7:46,195,350...46,238,503
JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 IMP (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr10:20,952,232...21,080,429
Ensembl chr10:20,952,547...21,080,429
JBrowse link
G Alms1 ALMS1, centrosome and basal body associated IMP (MGI:3588454|PMID:16000322) MGI PMID:16000322 MGI:3588454 NCBI chr 6:85,587,498...85,726,611
Ensembl chr 6:85,587,531...85,702,753
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 (human) IMP (MGI:3044824|PMID:15173597) MGI PMID:15173597 MGI:3044824 NCBI chr 9:59,321,966...59,353,508
Ensembl chr 9:59,321,990...59,353,508
JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 IMP (MGI:3814679|PMID:17255172) MGI PMID:17255172 MGI:3814679 NCBI chr 2:180,774,381...180,776,900
Ensembl chr 2:180,774,381...180,776,900
JBrowse link
G Ccdc66 coiled-coil domain containing 66 IMP (MGI:5141557|PMID:21680557) MGI PMID:21680557 MGI:5141557 NCBI chr14:27,481,090...27,508,510
Ensembl chr14:27,481,090...27,508,460
JBrowse link
G Cfh complement component factor h IMP (MGI:3760334|PMID:17921253) MGI PMID:17921253 MGI:3760334 NCBI chr 1:140,085,855...140,183,411
Ensembl chr 1:140,084,708...140,183,764
JBrowse link
G Miat myocardial infarction associated transcript (non-protein coding) IMP (MGI:3655931|PMID:16877424) MGI PMID:16877424 MGI:3655931 NCBI chr 5:112,213,228...112,228,948
Ensembl chr 5:112,213,228...112,229,395
JBrowse link
G Naglu alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB) IMP (MGI:3769195|PMID:17712420) MGI PMID:17712420 MGI:3769195 NCBI chr11:101,070,090...101,077,672
Ensembl chr11:101,070,012...101,077,672
JBrowse link
G Nrl neural retina leucine zipper gene IMP
IBA
(MGI:2385798|PMID:11694879)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:11694879, PMID:21873635 MGI:2385798, MGI:6201960 NCBI chr14:55,518,978...55,524,981
Ensembl chr14:55,518,978...55,524,981
JBrowse link
G Ntrk2 neurotrophic tyrosine kinase, receptor, type 2 IMP (MGI:3039190|PMID:10516311) MGI PMID:10516311 MGI:3039190 NCBI chr13:58,806,472...59,133,970
Ensembl chr13:58,806,569...59,133,970
JBrowse link
G Rorb RAR-related orphan receptor beta IMP (MGI:3652638|PMID:16574740), (MGI:4366105|PMID:19805139) UniProt PMID:16574740, PMID:19805139 MGI:3652638, MGI:4366105 NCBI chr19:18,930,609...19,111,196
Ensembl chr19:18,930,605...19,111,196
JBrowse link
G Rp1 retinitis pigmentosa 1 (human) IDA (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chr 1:4,115,673...4,409,266
Ensembl chr 1:3,999,557...4,409,241
JBrowse link
G Rpgrip1 retinitis pigmentosa GTPase regulator interacting protein 1 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr14:52,104,241...52,161,339
Ensembl chr14:52,110,704...52,163,546
JBrowse link
G Rpgrip1l Rpgrip1-like IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 8:91,217,030...91,313,291
Ensembl chr 8:91,217,030...91,313,262
JBrowse link
G Trpm1 transient receptor potential cation channel, subfamily M, member 1 IMP (MGI:4420740|PMID:19966281) MGI PMID:19966281 MGI:4420740 NCBI chr 7:64,153,835...64,269,772
Ensembl chr 7:64,153,835...64,269,775
JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptn pleiotrophin ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 6:36,714,924...36,810,179
Ensembl chr 6:36,714,929...36,810,220
JBrowse link
G Sox8 SRY (sex determining region Y)-box 8 IGI (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chr17:25,565,893...25,570,686
Ensembl chr17:25,565,892...25,570,686
JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 IGI (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chr11:112,782,210...112,787,757
Ensembl chr11:112,782,224...112,787,760
JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 IDA
IMP
(MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 4:148,804,366...148,954,893
Ensembl chr 4:148,804,429...148,954,889
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23387
    cellular process 17460
      cellular developmental process 4667
        cell differentiation 4560
          neuron differentiation 1618
            photoreceptor cell differentiation 86
              eye photoreceptor cell differentiation + 60
              negative regulation of photoreceptor cell differentiation + 7
              ocellus photoreceptor cell differentiation + 0
              photoreceptor cell development + 66
              photoreceptor cell fate commitment + 3
              positive regulation of photoreceptor cell differentiation + 2
              regulation of photoreceptor cell differentiation + 12
Path 2
Term Annotations click to browse term
  biological_process 23387
    developmental process 7031
      anatomical structure development 6505
        multicellular organism development 5969
          system development 5380
            nervous system development 2722
              neurogenesis 1939
                generation of neurons 1785
                  neuron differentiation 1618
                    photoreceptor cell differentiation 86
                      eye photoreceptor cell differentiation + 60
                      negative regulation of photoreceptor cell differentiation + 7
                      ocellus photoreceptor cell differentiation + 0
                      photoreceptor cell development + 66
                      photoreceptor cell fate commitment + 3
                      positive regulation of photoreceptor cell differentiation + 2
                      regulation of photoreceptor cell differentiation + 12
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.