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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor cell differentiation
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Accession:GO:0046530 term browser browse the term
Definition:The specialization of organization of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light. An example of this process is found in Drosophila melanogaster.
Synonyms:alt_id: GO:0007467


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photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CFH complement factor H ISO (MGI:5796739|PMID:26149919), (MGI:6304909|PMID:30705315) MGI PMID:26149919, PMID:30705315 MGI:5796739, MGI:6304909 NCBI chr 1:196,652,033...196,747,504
Ensembl chr 1:196,652,043...196,747,504
Ensembl chr 1:196,652,043...196,747,504
JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DSCAM DS cell adhesion molecule ISS UniProtKB GO_REF:0000024 NCBI chr21:40,010,999...40,847,158
Ensembl chr21:40,010,999...40,847,158
JBrowse link
G PROM1 prominin 1 IMP
IBA
ISS
(PMID:18654668)
(PMID:21873635)
BHF-UCL
GO_Central
UniProtKB
PMID:18654668, PMID:21873635 GO_REF:0000024 NCBI chr 4:15,968,226...16,084,059
Ensembl chr 4:15,963,076...16,084,378
JBrowse link
G ROM1 retinal outer segment membrane protein 1 IEA Ensembl GO_REF:0000107 NCBI chr11:62,613,257...62,615,116
Ensembl chr11:62,611,722...62,615,116
Ensembl chr11:62,611,722...62,615,116
JBrowse link
G SDK2 sidekick cell adhesion molecule 2 ISS UniProtKB GO_REF:0000024 NCBI chr17:73,334,384...73,644,481
Ensembl chr17:73,334,384...73,644,445
JBrowse link
G SLC4A7 solute carrier family 4 member 7 ISO (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chr 3:27,372,721...27,484,420
Ensembl chr 3:27,372,721...27,484,420
JBrowse link
G TTC8 tetratricopeptide repeat domain 8 IEA Ensembl GO_REF:0000107 NCBI chr14:88,824,153...88,881,079
Ensembl chr14:88,824,153...88,881,078
JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule IEA Ensembl GO_REF:0000107 NCBI chr 2:219,054,424...219,060,921
Ensembl chr 2:219,054,424...219,060,921
JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 6:135,283,532...135,497,771
Ensembl chr 6:135,283,532...135,497,765
JBrowse link
G CEP290 centrosomal protein 290 ISS (PMID:16682973) HGNC PMID:16682973 NCBI chr12:88,049,013...88,142,216
Ensembl chr12:88,049,016...88,142,099
Ensembl chr12:88,049,016...88,142,099
JBrowse link
G CRB1 crumbs cell polarity complex component 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:197,201,504...197,478,455
Ensembl chr 1:197,268,204...197,478,455
JBrowse link
G FSCN2 fascin actin-bundling protein 2, retinal IEA Ensembl GO_REF:0000107 NCBI chr17:81,513,019...81,537,130
Ensembl chr17:81,528,377...81,537,130
Ensembl chr17:81,528,377...81,537,130
JBrowse link
G GABRR2 gamma-aminobutyric acid type A receptor subunit rho2 NOT ISO (MGI:2179933|PMID:12019334) MGI PMID:12019334 MGI:2179933 NCBI chr 6:89,254,464...89,315,299
Ensembl chr 6:89,254,464...89,315,299
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696
JBrowse link
G GNGT1 G protein subunit gamma transducin 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:93,906,567...93,911,265
Ensembl chr 7:93,591,573...93,911,265
JBrowse link
G MFRP membrane frizzled-related protein IEA Ensembl GO_REF:0000107 NCBI chr11:119,338,942...119,346,705
Ensembl chr11:119,338,942...119,346,705
JBrowse link
G MYO7A myosin VIIA IC (PMID:8842737) UniProtKB PMID:8842737 NCBI chr11:77,128,192...77,215,241
Ensembl chr11:77,128,246...77,215,241
JBrowse link
G NR2E3 nuclear receptor subfamily 2 group E member 3 IEA Ensembl GO_REF:0000107 NCBI chr15:71,810,554...71,818,253
Ensembl chr15:71,792,638...71,818,259
JBrowse link
G OLFM3 olfactomedin 3 IEA Ensembl GO_REF:0000107 NCBI chr 1:101,800,028...101,996,926
Ensembl chr 1:101,802,574...101,997,030
Ensembl chr 1:101,802,574...101,997,030
JBrowse link
G PAX6 paired box 6 IEA Ensembl GO_REF:0000107 NCBI chr11:31,789,026...31,817,961
Ensembl chr11:31,784,779...31,817,961
JBrowse link
G PDGFB platelet derived growth factor subunit B ISO (MGI:5607451|PMID:25224828) MGI PMID:25224828 MGI:5607451 NCBI chr22:39,223,359...39,244,982
Ensembl chr22:39,223,359...39,244,982
JBrowse link
G PRDM1 PR/SET domain 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:106,046,729...106,109,938
Ensembl chr 6:105,993,463...106,109,939
JBrowse link
G PRKCI protein kinase C iota IEA Ensembl GO_REF:0000107 NCBI chr 3:170,222,424...170,305,981
Ensembl chr 3:170,222,424...170,305,977
JBrowse link
G RDH13 retinol dehydrogenase 13 IEA Ensembl GO_REF:0000107 NCBI chr19:55,040,375...55,069,531
Ensembl chr19:55,039,108...55,071,291
JBrowse link
G RORB RAR related orphan receptor B ISS UniProtKB GO_REF:0000024 NCBI chr 9:74,497,335...74,693,177
Ensembl chr 9:74,497,335...74,693,177
JBrowse link
G RPGR retinitis pigmentosa GTPase regulator ISO (MGI:2654998|PMID:12651948) MGI PMID:12651948 MGI:2654998 NCBI chr  X:38,269,163...38,327,509
Ensembl chr  X:38,269,170...38,327,544
Ensembl chr  X:38,269,170...38,327,544
JBrowse link
G RPGRIP1 RPGR interacting protein 1 IEA InterPro GO_REF:0000002 NCBI chr14:21,280,083...21,351,316
Ensembl chr14:21,287,939...21,351,301
JBrowse link
G TH tyrosine hydroxylase ISS BHF-UCL GO_REF:0000024 NCBI chr11:2,163,929...2,174,081
Ensembl chr11:2,163,929...2,171,877
Ensembl chr11:2,163,929...2,171,877
JBrowse link
G TULP1 TUB like protein 1 ISS UniProtKB GO_REF:0000024 NCBI chr 6:35,497,874...35,512,896
Ensembl chr 6:35,497,874...35,512,896
JBrowse link
G VEGFA vascular endothelial growth factor A ISS BHF-UCL GO_REF:0000024 NCBI chr 6:43,770,209...43,786,487
Ensembl chr 6:43,770,184...43,786,487
JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGTPBP1 ATP/GTP binding protein 1 IEA
ISS
Ensembl
UniProtKB
GO_REF:0000024, GO_REF:0000107 NCBI chr 9:85,546,539...85,742,029
Ensembl chr 9:85,546,539...85,742,029
JBrowse link
G NKD1 NKD inhibitor of WNT signaling pathway 1 ISS (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr16:50,548,396...50,649,249
Ensembl chr16:50,548,396...50,649,249
JBrowse link
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha IGI (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr 3:135,965,673...136,149,615
Ensembl chr 3:135,965,728...136,147,894
JBrowse link
G STAT3 signal transducer and activator of transcription 3 ISS UniProtKB GO_REF:0000024 NCBI chr17:42,313,324...42,388,502
Ensembl chr17:42,313,324...42,388,482
Ensembl chr17:42,313,324...42,388,482
JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTX2 orthodenticle homeobox 2 ISO (MGI:2680889|PMID:14625556) MGI PMID:14625556 MGI:2680889 NCBI chr14:56,799,905...56,810,479
Ensembl chr14:56,799,905...56,816,693
JBrowse link
negative regulation of eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DIO3 iodothyronine deiodinase 3 IEA Ensembl GO_REF:0000107 NCBI chr14:101,561,351...101,563,452
Ensembl chr14:101,561,351...101,563,452
JBrowse link
G THRB thyroid hormone receptor beta IEA Ensembl GO_REF:0000107 NCBI chr 3:24,117,153...24,495,708
Ensembl chr 3:24,117,153...24,495,756
JBrowse link
negative regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNTF ciliary neurotrophic factor IEA Ensembl GO_REF:0000107 NCBI chr11:58,622,665...58,625,733
Ensembl chr11:58,622,665...58,625,733
JBrowse link
G DLX1 distal-less homeobox 1 ISS UniProtKB GO_REF:0000024 NCBI chr 2:172,085,507...172,089,674
Ensembl chr 2:172,084,740...172,089,677
JBrowse link
G DLX2 distal-less homeobox 2 ISS UniProtKB GO_REF:0000024 NCBI chr 2:172,099,438...172,102,900
Ensembl chr 2:172,099,438...172,102,900
JBrowse link
G NOTCH1 notch receptor 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
G SOX8 SRY-box transcription factor 8 IEA Ensembl GO_REF:0000107 NCBI chr16:981,770...986,979
Ensembl chr16:981,770...986,979
JBrowse link
G SOX9 SRY-box transcription factor 9 ISS UniProtKB GO_REF:0000024 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416
JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 1:10,636,604...10,796,650
Ensembl chr 1:10,636,604...10,796,650
JBrowse link
photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL3 ADP ribosylation factor like GTPase 3 ISS UniProtKB GO_REF:0000024 NCBI chr10:102,673,731...102,714,397
Ensembl chr10:102,673,731...102,714,397
JBrowse link
G DCX doublecortin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:111,293,779...111,412,205
Ensembl chr  X:111,293,779...111,412,429
JBrowse link
G RP1 RP1 axonemal microtubule associated ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 8:54,509,448...54,871,720
Ensembl chr 8:54,509,422...54,871,720
JBrowse link
G RP1L1 RP1 like 1 ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 8:10,606,349...10,655,143
Ensembl chr 8:10,606,349...10,712,187
JBrowse link
G TUG1 taurine up-regulated 1 ISO (MGI:3574244|PMID:15797018) MGI PMID:15797018 MGI:3574244 NCBI chr22:30,969,211...30,979,395
Ensembl chr22:30,969,245...30,979,395
JBrowse link
photoreceptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS1 Bardet-Biedl syndrome 1 ISO (MGI:3767384|PMID:18032602) MGI PMID:18032602 MGI:3767384 NCBI chr11:66,510,635...66,533,598
Ensembl chr11:66,510,606...66,533,613
JBrowse link
G C8orf37 chromosome 8 open reading frame 37 ISS UniProtKB GO_REF:0000024 NCBI chr 8:95,244,913...95,269,201
Ensembl chr 8:95,244,913...95,269,201
JBrowse link
G CABP4 calcium binding protein 4 IEA Ensembl GO_REF:0000107 NCBI chr11:67,452,403...67,461,774
Ensembl chr11:67,452,406...67,460,313
JBrowse link
G CDHR1 cadherin related family member 1 IMP (PMID:23044944) UniProtKB PMID:23044944 NCBI chr10:84,194,537...84,219,621
Ensembl chr10:84,194,537...84,219,621
JBrowse link
G GRK1 G protein-coupled receptor kinase 1 ISO (MGI:1334014|PMID:10097103) MGI PMID:10097103 MGI:1334014 NCBI chr13:113,645,771...113,737,736
Ensembl chr13:113,667,219...113,737,736
JBrowse link
G MFSD2A major facilitator superfamily domain containing 2A ISS ARUK-UCL GO_REF:0000024 NCBI chr 1:39,955,145...39,969,956
Ensembl chr 1:39,955,112...39,969,968
JBrowse link
G RABL2B RAB, member of RAS oncogene family like 2B ISO (MGI:6094395|PMID:28625565) UniProt PMID:28625565 MGI:6094395 NCBI chr22:50,767,500...50,783,705
Ensembl chr22:50,767,501...50,783,663
JBrowse link
photoreceptor cell outer segment organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISS UniProtKB GO_REF:0000024 NCBI chr 6:135,283,532...135,497,771
Ensembl chr 6:135,283,532...135,497,765
JBrowse link
G BBS4 Bardet-Biedl syndrome 4 IEA Ensembl GO_REF:0000107 NCBI chr15:72,686,204...72,738,476
Ensembl chr15:72,686,179...72,738,475
JBrowse link
G CDHR1 cadherin related family member 1 IMP (PMID:23044944) UniProtKB PMID:23044944 NCBI chr10:84,194,537...84,219,621
Ensembl chr10:84,194,537...84,219,621
JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 IEA Ensembl GO_REF:0000107 NCBI chr16:57,882,340...57,971,128
Ensembl chr16:57,882,340...57,971,128
JBrowse link
G CRB1 crumbs cell polarity complex component 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:197,201,504...197,478,455
Ensembl chr 1:197,268,204...197,478,455
JBrowse link
G IFT140 intraflagellar transport 140 IEA Ensembl GO_REF:0000107 NCBI chr16:1,510,427...1,612,072
Ensembl chr16:1,510,427...1,612,072
JBrowse link
G IFT20 intraflagellar transport 20 IEA Ensembl GO_REF:0000107 NCBI chr17:28,328,326...28,335,472
Ensembl chr17:28,328,325...28,335,489
JBrowse link
G MFSD2A major facilitator superfamily domain containing 2A ISS ARUK-UCL GO_REF:0000024 NCBI chr 1:39,955,145...39,969,956
Ensembl chr 1:39,955,112...39,969,968
JBrowse link
G NPHP1 nephrocystin 1 ISO (MGI:4437526|PMID:20081859) UniProt PMID:20081859 MGI:4437526 NCBI chr 2:110,123,348...110,205,013
Ensembl chr 2:110,122,311...110,205,066
JBrowse link
G NPHP4 nephrocystin 4 IEA Ensembl GO_REF:0000107 NCBI chr 1:5,862,810...5,992,425
Ensembl chr 1:5,862,811...5,992,473
JBrowse link
G PCARE photoreceptor cilium actin regulator IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:29,061,695...29,074,523
Ensembl chr 2:29,060,976...29,074,523
JBrowse link
G PRPH2 peripherin 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:42,694,509...42,723,039
Ensembl chr 6:42,696,598...42,722,597
JBrowse link
G ROM1 retinal outer segment membrane protein 1 IEA Ensembl GO_REF:0000107 NCBI chr11:62,613,257...62,615,116
Ensembl chr11:62,611,722...62,615,116
Ensembl chr11:62,611,722...62,615,116
JBrowse link
G RP1 RP1 axonemal microtubule associated ISS UniProtKB GO_REF:0000024 NCBI chr 8:54,509,448...54,871,720
Ensembl chr 8:54,509,422...54,871,720
JBrowse link
G TMEM67 transmembrane protein 67 ISO RGD PMID:23516626 RGD:11535084 NCBI chr 8:93,754,844...93,832,653
Ensembl chr 8:93,754,844...93,819,234
JBrowse link
G TOPORS TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase ISS (PMID:21159800) BHF-UCL PMID:21159800 NCBI chr 9:32,540,544...32,552,586
Ensembl chr 9:32,540,544...32,552,586
JBrowse link
positive regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRX cone-rod homeobox ISO RGD PMID:16799048 RGD:1600973 NCBI chr19:47,821,937...47,843,324
Ensembl chr19:47,819,779...47,843,330
JBrowse link
G SHH sonic hedgehog signaling molecule ISO RGD PMID:9236238 RGD:2306313 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 6:135,283,532...135,497,771
Ensembl chr 6:135,283,532...135,497,765
JBrowse link
G CABP4 calcium binding protein 4 IEA Ensembl GO_REF:0000107 NCBI chr11:67,452,403...67,461,774
Ensembl chr11:67,452,406...67,460,313
JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 2:98,346,181...98,399,154
Ensembl chr 2:98,346,188...98,398,601
Ensembl chr 2:98,346,188...98,398,601
JBrowse link
G DIO3 iodothyronine deiodinase 3 IEA Ensembl GO_REF:0000107 NCBI chr14:101,561,351...101,563,452
Ensembl chr14:101,561,351...101,563,452
JBrowse link
G GNAT2 G protein subunit alpha transducin 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:109,603,091...109,619,616
Ensembl chr 1:109,603,254...109,619,929
JBrowse link
G HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:45,254,948...45,696,380
Ensembl chr 5:45,254,948...45,696,498
JBrowse link
G MIR124-1 microRNA 124-1 ISO (MGI:5303045|PMID:21857657) MGI PMID:21857657 MGI:5303045 NCBI chr 8:9,903,388...9,903,472
Ensembl chr 8:9,903,388...9,903,472
JBrowse link
G MIR124-2 microRNA 124-2 ISO (MGI:5303045|PMID:21857657) MGI PMID:21857657 MGI:5303045 NCBI chr 8:64,379,149...64,379,257
Ensembl chr 8:64,379,149...64,379,257
JBrowse link
G MIR182 microRNA 182 ISO (MGI:5469752|PMID:23341629) MGI PMID:23341629 MGI:5469752 NCBI chr 7:129,770,383...129,770,492
Ensembl chr 7:129,770,383...129,770,492
JBrowse link
G MIR183 microRNA 183 ISO (MGI:5469752|PMID:23341629) MGI PMID:23341629 MGI:5469752 NCBI chr 7:129,774,905...129,775,014
Ensembl chr 7:129,774,905...129,775,014
JBrowse link
G MIR96 microRNA 96 ISO (MGI:5469752|PMID:23341629) MGI PMID:23341629 MGI:5469752 NCBI chr 7:129,774,692...129,774,769
Ensembl chr 7:129,774,692...129,774,769
JBrowse link
G PDE6C phosphodiesterase 6C IEA Ensembl GO_REF:0000107 NCBI chr10:93,612,537...93,666,010
Ensembl chr10:93,612,537...93,666,010
JBrowse link
G RORB RAR related orphan receptor B ISS UniProtKB GO_REF:0000024 NCBI chr 9:74,497,335...74,693,177
Ensembl chr 9:74,497,335...74,693,177
JBrowse link
G RP1 RP1 axonemal microtubule associated ISS UniProtKB GO_REF:0000024 NCBI chr 8:54,509,448...54,871,720
Ensembl chr 8:54,509,422...54,871,720
JBrowse link
G THRB thyroid hormone receptor beta IEA Ensembl GO_REF:0000107 NCBI chr 3:24,117,153...24,495,708
Ensembl chr 3:24,117,153...24,495,756
JBrowse link
G THY1 Thy-1 cell surface antigen ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr11:119,415,476...119,424,985
Ensembl chr11:119,417,378...119,424,985
Ensembl chr11:119,417,378...119,424,985
JBrowse link
G TOPORS TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase ISS (PMID:21159800) BHF-UCL PMID:21159800 NCBI chr 9:32,540,544...32,552,586
Ensembl chr 9:32,540,544...32,552,586
JBrowse link
G USH1C USH1 protein network component harmonin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:17,493,895...17,544,416
Ensembl chr11:17,493,895...17,544,416
JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 6:135,283,532...135,497,771
Ensembl chr 6:135,283,532...135,497,765
JBrowse link
G ALMS1 ALMS1 centrosome and basal body associated protein ISO (MGI:3588454|PMID:16000322) MGI PMID:16000322 MGI:3588454 NCBI chr 2:73,385,758...73,609,919
Ensembl chr 2:73,385,758...73,625,166
JBrowse link
G BBS4 Bardet-Biedl syndrome 4 ISS BHF-UCL GO_REF:0000024 NCBI chr15:72,686,204...72,738,476
Ensembl chr15:72,686,179...72,738,475
JBrowse link
G BHLHE23 basic helix-loop-helix family member e23 IEA Ensembl GO_REF:0000107 NCBI chr20:63,005,927...63,006,964
Ensembl chr20:63,005,927...63,007,035
JBrowse link
G CCDC66 coiled-coil domain containing 66 ISO (MGI:5141557|PMID:21680557) MGI PMID:21680557 MGI:5141557 NCBI chr 3:56,557,125...56,621,837
Ensembl chr 3:56,557,161...56,621,837
JBrowse link
G CFH complement factor H ISO (MGI:3760334|PMID:17921253) MGI PMID:17921253 MGI:3760334 NCBI chr 1:196,652,033...196,747,504
Ensembl chr 1:196,652,043...196,747,504
Ensembl chr 1:196,652,043...196,747,504
JBrowse link
G MIAT myocardial infarction associated transcript ISO (MGI:3655931|PMID:16877424) MGI PMID:16877424 MGI:3655931 NCBI chr22:26,657,482...26,676,478
Ensembl chr22:26,646,411...26,676,475
JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase IEA Ensembl GO_REF:0000107 NCBI chr17:42,534,238...42,544,449
Ensembl chr17:42,536,241...42,544,449
JBrowse link
G NRL neural retina leucine zipper IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr14:24,078,662...24,114,949
Ensembl chr14:24,080,107...24,115,014
Ensembl chr14:24,080,107...24,115,014
JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 IEA Ensembl GO_REF:0000107 NCBI chr 9:84,668,458...85,027,070
Ensembl chr 9:84,668,551...85,027,070
JBrowse link
G RORB RAR related orphan receptor B ISS UniProtKB GO_REF:0000024 NCBI chr 9:74,497,335...74,693,177
Ensembl chr 9:74,497,335...74,693,177
JBrowse link
G RP1 RP1 axonemal microtubule associated ISS UniProtKB GO_REF:0000024 NCBI chr 8:54,509,448...54,871,720
Ensembl chr 8:54,509,422...54,871,720
JBrowse link
G RPGRIP1 RPGR interacting protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:21,280,083...21,351,316
Ensembl chr14:21,287,939...21,351,301
JBrowse link
G RPGRIP1L RPGRIP1 like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:53,598,153...53,703,859
Ensembl chr16:53,598,153...53,703,938
JBrowse link
G TOPORS TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase ISS (PMID:21159800) BHF-UCL PMID:21159800 NCBI chr 9:32,540,544...32,552,586
Ensembl chr 9:32,540,544...32,552,586
JBrowse link
G TRPM1 transient receptor potential cation channel subfamily M member 1 IEA Ensembl GO_REF:0000107 NCBI chr15:31,001,065...31,161,160
Ensembl chr15:31,001,061...31,161,273
JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTN pleiotrophin IEA Ensembl GO_REF:0000107 NCBI chr 7:137,227,341...137,343,733
Ensembl chr 7:137,227,341...137,343,774
JBrowse link
G SOX8 SRY-box transcription factor 8 ISS UniProtKB GO_REF:0000024 NCBI chr16:981,770...986,979
Ensembl chr16:981,770...986,979
JBrowse link
G SOX9 SRY-box transcription factor 9 ISS UniProtKB GO_REF:0000024 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416
JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 1:10,636,604...10,796,650
Ensembl chr 1:10,636,604...10,796,650
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18672
    cellular process 17690
      cellular developmental process 4995
        cell differentiation 4891
          neuron differentiation 1676
            photoreceptor cell differentiation 89
              eye photoreceptor cell differentiation + 65
              negative regulation of photoreceptor cell differentiation + 7
              ocellus photoreceptor cell differentiation + 0
              photoreceptor cell development + 68
              photoreceptor cell fate commitment + 3
              positive regulation of photoreceptor cell differentiation + 2
              regulation of photoreceptor cell differentiation + 11
Path 2
Term Annotations click to browse term
  biological_process 18672
    developmental process 7466
      anatomical structure development 6873
        multicellular organism development 6346
          system development 5749
            nervous system development 2886
              neurogenesis 1984
                generation of neurons 1839
                  neuron differentiation 1676
                    photoreceptor cell differentiation 89
                      eye photoreceptor cell differentiation + 65
                      negative regulation of photoreceptor cell differentiation + 7
                      ocellus photoreceptor cell differentiation + 0
                      photoreceptor cell development + 68
                      photoreceptor cell fate commitment + 3
                      positive regulation of photoreceptor cell differentiation + 2
                      regulation of photoreceptor cell differentiation + 11
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.