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ONTOLOGY REPORT - ANNOTATIONS

Term:photoreceptor cell differentiation
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Accession:GO:0046530 term browser browse the term
Definition:The specialization of organization of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light. An example of this process is found in Drosophila melanogaster.
Synonyms:alt_id: GO:0007467


show annotations for term's descendants           Sort by:
photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:76,344,474...76,348,415
Ensembl chr12:76,344,474...76,348,415 		JBrowse link
G CFH complement factor H acts_upstream_of_or_within ISO (PMID:26149919), (PMID:30705315) MGI PMID:26149919 PMID:30705315 NCBI chr 1:196,652,043...196,747,504
Ensembl chr 1:196,651,754...196,752,476 		JBrowse link
G ELP6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:47,495,640...47,513,712
Ensembl chr 3:47,495,640...47,513,712 		JBrowse link
G EPG5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:45,800,581...45,967,329
Ensembl chr18:45,800,581...45,967,329 		JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DSCAM DS cell adhesion molecule involved_in ISS UniProt GO_REF:0000024 NCBI chr21:40,010,999...40,847,158
Ensembl chr21:40,010,999...40,847,158 		JBrowse link
G PROM1 prominin 1 involved_in ISS
IBA
IMP		 (PMID:18654668) UniProt
GO_Central
BHF-UCL		 PMID:18654668 GO_REF:0000024 GO_REF:0000033 NCBI chr 4:15,968,228...16,084,023
Ensembl chr 4:15,963,076...16,084,378 		JBrowse link
G ROM1 retinal outer segment membrane protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:62,613,257...62,615,116
Ensembl chr11:62,611,722...62,615,116 		JBrowse link
G SDK2 sidekick cell adhesion molecule 2 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr17:73,334,384...73,644,445
Ensembl chr17:73,334,384...73,644,445 		JBrowse link
G SLC4A7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (PMID:12808454) MGI PMID:12808454 NCBI chr 3:27,372,723...27,484,384
Ensembl chr 3:27,372,723...27,484,420 		JBrowse link
G TTC8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:88,824,153...88,881,079
Ensembl chr14:88,824,153...88,881,078 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:219,054,424...219,060,921
Ensembl chr 2:219,054,424...219,060,921 		JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chr 6:135,283,532...135,497,740
Ensembl chr 6:135,283,407...135,498,434 		JBrowse link
G CEP290 centrosomal protein 290 involved_in ISS (PMID:16682973) HGNC-UCL PMID:16682973 NCBI chr12:88,049,016...88,142,088
Ensembl chr12:88,049,016...88,142,099 		JBrowse link
G CRB1 crumbs cell polarity complex component 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:197,201,504...197,478,455
Ensembl chr 1:197,268,204...197,478,455 		JBrowse link
G DZANK1 double zinc ribbon and ankyrin repeat domains 1 acts_upstream_of_or_within
involved_in		 ISS
IBA		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 NCBI chr20:18,383,367...18,467,030
Ensembl chr20:18,383,367...18,467,281 		JBrowse link
G FSCN2 fascin actin-bundling protein 2, retinal acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:81,515,062...81,537,130
Ensembl chr17:81,528,377...81,537,130 		JBrowse link
G GABRR2 gamma-aminobutyric acid type A receptor subunit rho2 NOT|acts_upstream_of_or_within ISO (PMID:12019334) MGI PMID:12019334 NCBI chr 6:89,254,464...89,315,299
Ensembl chr 6:89,254,464...89,315,299 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696 		JBrowse link
G GNGT1 G protein subunit gamma transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:93,906,567...93,911,265
Ensembl chr 7:93,591,573...93,911,265 		JBrowse link
G MFRP membrane frizzled-related protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:119,338,942...119,346,705
Ensembl chr11:119,338,942...119,346,705 		JBrowse link
G MYO7A myosin VIIA involved_in IC (PMID:8842737) UniProt PMID:8842737 NCBI chr11:77,128,246...77,215,241
Ensembl chr11:77,128,246...77,215,241 		JBrowse link
G NR2E3 nuclear receptor subfamily 2 group E member 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:71,810,554...71,818,253
Ensembl chr15:71,792,638...71,818,259 		JBrowse link
G OLFM3 olfactomedin 3 involved_in ISO
IEA		 RGD
Ensembl		 PMID:12019210 GO_REF:0000107 RGD:633402 NCBI chr 1:101,802,560...101,996,926
Ensembl chr 1:101,802,560...101,996,926 		JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:31,789,026...31,817,961
Ensembl chr11:31,784,779...31,817,961 		JBrowse link
G PDGFB platelet derived growth factor subunit B acts_upstream_of_or_within ISO (PMID:25224828) MGI PMID:25224828 NCBI chr22:39,223,359...39,244,982
Ensembl chr22:39,223,359...39,244,982 		JBrowse link
G POC5 POC5 centriolar protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:75,674,124...75,717,437
Ensembl chr 5:75,674,124...75,717,448 		JBrowse link
G PRDM1 PR/SET domain 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:105,992,690...106,109,938
Ensembl chr 6:105,993,463...106,109,939 		JBrowse link
G PRKCI protein kinase C iota acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:170,222,424...170,305,977
Ensembl chr 3:170,222,424...170,305,977 		JBrowse link
G RDH13 retinol dehydrogenase 13 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:55,039,103...55,069,520
Ensembl chr19:55,039,108...55,071,291 		JBrowse link
G RORB RAR related orphan receptor B involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:74,497,335...74,693,177
Ensembl chr 9:74,497,335...74,693,177 		JBrowse link
G RPGR retinitis pigmentosa GTPase regulator acts_upstream_of_or_within
involved_in		 ISO
ISS		 (PMID:12651948) MGI
UniProt		 PMID:12651948 GO_REF:0000024 NCBI chr  X:38,269,163...38,327,509
Ensembl chr  X:38,269,163...38,327,544 		JBrowse link
G RPGRIP1 RPGR interacting protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:21,280,083...21,351,301
Ensembl chr14:21,280,083...21,351,301 		JBrowse link
G TH tyrosine hydroxylase involved_in ISS
IEA		 BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr11:2,163,929...2,171,815
Ensembl chr11:2,163,929...2,171,815 		JBrowse link
G TULP1 TUB like protein 1 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:35,497,874...35,512,896
Ensembl chr 6:35,497,874...35,512,896 		JBrowse link
G VEGFA vascular endothelial growth factor A involved_in
acts_upstream_of_or_within		 ISS
IEA		 BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:43,770,211...43,786,487
Ensembl chr 6:43,770,184...43,786,487 		JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGTPBP1 ATP/GTP binding carboxypeptidase 1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:85,546,539...85,805,483
Ensembl chr 9:85,546,539...85,742,029 		JBrowse link
G NKD1 NKD inhibitor of WNT signaling pathway 1 involved_in ISS (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr16:50,548,396...50,649,249
Ensembl chr16:50,548,396...50,649,249 		JBrowse link
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha involved_in IGI (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr 3:135,965,728...136,147,894
Ensembl chr 3:135,965,728...136,147,894 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 involved_in ISS UniProt GO_REF:0000024 NCBI chr17:42,313,324...42,388,442
Ensembl chr17:42,313,324...42,388,568 		JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:14625556) MGI PMID:14625556 NCBI chr14:56,799,905...56,810,479
Ensembl chr14:56,799,905...56,816,693 		JBrowse link
negative regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNTF ciliary neurotrophic factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:58,622,665...58,625,733
Ensembl chr11:58,622,665...58,625,733 		JBrowse link
G DLX1 distal-less homeobox 1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:172,085,507...172,089,674
Ensembl chr 2:172,084,740...172,089,677 		JBrowse link
G DLX2 distal-less homeobox 2 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:172,099,438...172,102,900
Ensembl chr 2:172,099,438...172,102,900 		JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048 		JBrowse link
G SOX8 SRY-box transcription factor 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:981,770...986,979
Ensembl chr16:981,444...986,979 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 1:10,636,604...10,796,646
Ensembl chr 1:10,636,604...10,796,650 		JBrowse link
photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL3 ARF like GTPase 3 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr10:102,673,731...102,714,397
Ensembl chr10:102,673,731...102,714,397 		JBrowse link
G FAM151B family with sequence similarity 151 member B involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:80,488,100...80,542,563
Ensembl chr 5:80,487,969...80,542,563 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:54,559,185...54,871,234
Ensembl chr 8:54,509,422...54,871,720 		JBrowse link
G RP1L1 RP1 like 1 involved_in ISS
IBA		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 NCBI chr 8:10,606,349...10,655,143
Ensembl chr 8:10,606,349...10,712,187 		JBrowse link
G TUG1 taurine up-regulated 1 acts_upstream_of_or_within ISO (PMID:15797018) MGI PMID:15797018 NCBI chr22:30,969,265...30,979,395
Ensembl chr22:30,969,245...30,979,395 		JBrowse link
photoreceptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:66,510,635...66,533,598
Ensembl chr11:66,510,606...66,533,613 		JBrowse link
G CABP4 calcium binding protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:67,452,403...67,461,752
Ensembl chr11:67,452,406...67,461,752 		JBrowse link
G CDHR1 cadherin related family member 1 involved_in IMP (PMID:23044944) UniProt PMID:23044944 NCBI chr10:84,194,537...84,219,621
Ensembl chr10:84,194,537...84,219,621 		JBrowse link
G CFAP418 cilia and flagella associated protein 418 involved_in ISS UniProt GO_REF:0000024 NCBI chr 8:95,244,913...95,269,201
Ensembl chr 8:95,244,913...95,269,201 		JBrowse link
G GRK1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within ISO (PMID:10097103) MGI PMID:10097103 NCBI chr13:113,648,199...113,737,736
Ensembl chr13:113,667,219...113,737,736 		JBrowse link
G MFSD2A MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISS
IEA		 ARUK-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:39,955,145...39,969,956
Ensembl chr 1:39,955,112...39,969,968 		JBrowse link
G RABL2B RAB, member of RAS oncogene family like 2B involved_in ISO (PMID:28625565) UniProt PMID:28625565 NCBI chr22:50,767,506...50,783,636
Ensembl chr22:50,767,501...50,783,667 		JBrowse link
photoreceptor cell outer segment organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 (PMID:20592197) UniProt
MGI		 PMID:20592197 GO_REF:0000024 NCBI chr 6:135,283,532...135,497,740
Ensembl chr 6:135,283,407...135,498,434 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:72,686,207...72,738,473
Ensembl chr15:72,686,186...72,742,006 		JBrowse link
G CDHR1 cadherin related family member 1 involved_in IMP (PMID:23044944) UniProt PMID:23044944 NCBI chr10:84,194,537...84,219,621
Ensembl chr10:84,194,537...84,219,621 		JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:57,882,340...57,971,128
Ensembl chr16:57,882,340...57,971,128 		JBrowse link
G CRB1 crumbs cell polarity complex component 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:197,201,504...197,478,455
Ensembl chr 1:197,268,204...197,478,455 		JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:1,510,427...1,612,072
Ensembl chr16:1,510,427...1,612,072 		JBrowse link
G IFT20 intraflagellar transport 20 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:28,328,326...28,335,472
Ensembl chr17:28,328,325...28,335,489 		JBrowse link
G MFSD2A MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISS
IEA		 ARUK-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:39,955,145...39,969,956
Ensembl chr 1:39,955,112...39,969,968 		JBrowse link
G NPHP1 nephrocystin 1 involved_in ISO (PMID:20081859) UniProt PMID:20081859 NCBI chr 2:110,123,348...110,205,013
Ensembl chr 2:110,122,311...110,205,066 		JBrowse link
G NPHP4 nephrocystin 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:5,862,811...5,992,425
Ensembl chr 1:5,862,811...5,992,473 		JBrowse link
G PCARE photoreceptor cilium actin regulator involved_in
acts_upstream_of_or_within		 IBA
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:29,061,695...29,074,523
Ensembl chr 2:29,060,976...29,074,523 		JBrowse link
G PRPH2 peripherin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:42,696,598...42,722,597
Ensembl chr 6:42,696,598...42,722,597 		JBrowse link
G ROM1 retinal outer segment membrane protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:62,613,257...62,615,116
Ensembl chr11:62,611,722...62,615,116 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:54,559,185...54,871,234
Ensembl chr 8:54,509,422...54,871,720 		JBrowse link
G TMEM67 transmembrane protein 67 ISO RGD PMID:23516626 RGD:11535084 NCBI chr 8:93,754,844...93,832,653
Ensembl chr 8:93,754,844...93,819,234 		JBrowse link
positive regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRX cone-rod homeobox ISO RGD PMID:16799048 RGD:1600973 NCBI chr19:47,821,937...47,843,324
Ensembl chr19:47,819,779...47,843,330 		JBrowse link
G SHH sonic hedgehog signaling molecule ISO RGD PMID:9236238 RGD:2306313 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463 		JBrowse link
regulation of eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC004542.3 involved_in IEA RNAcentral GO_REF:0000115 Ensembl chr22:30,973,417...30,973,597 JBrowse link
G AC004542.4 involved_in IEA RNAcentral GO_REF:0000115 Ensembl chr22:30,971,296...30,971,382 JBrowse link
G AC004542.5 involved_in IEA RNAcentral GO_REF:0000115 Ensembl chr22:30,971,005...30,971,149 JBrowse link
G AC004542.6 involved_in IEA RNAcentral GO_REF:0000115 Ensembl chr22:30,972,857...30,973,093 JBrowse link
G RAB37 RAB37, member RAS oncogene family involved_in ISS UniProt GO_REF:0000024 NCBI chr17:74,671,131...74,747,335
Ensembl chr17:74,670,578...74,747,335 		JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chr 6:135,283,532...135,497,740
Ensembl chr 6:135,283,407...135,498,434 		JBrowse link
G CABP4 calcium binding protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:67,452,403...67,461,752
Ensembl chr11:67,452,406...67,461,752 		JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chr 2:98,346,456...98,398,601
Ensembl chr 2:98,346,188...98,398,601 		JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:123,354,065...123,380,326
Ensembl chr 9:123,356,170...123,380,324 		JBrowse link
G DIO3 iodothyronine deiodinase 3 acts_upstream_of_or_within ISO
IEA		 (PMID:20203194) MGI
Ensembl		 PMID:20203194 GO_REF:0000107 NCBI chr14:101,561,495...101,563,452
Ensembl chr14:101,560,139...101,563,452 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:109,603,091...109,619,616
Ensembl chr 1:109,603,091...109,619,929 		JBrowse link
G HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:45,254,948...45,696,380
Ensembl chr 5:45,254,948...45,696,498 		JBrowse link
G MIR124-1 microRNA 124-1 acts_upstream_of_or_within ISO (PMID:21857657) MGI PMID:21857657 NCBI chr 8:9,903,388...9,903,472
Ensembl chr 8:9,903,388...9,903,472 		JBrowse link
G MIR124-2 microRNA 124-2 acts_upstream_of_or_within ISO (PMID:21857657) MGI PMID:21857657 NCBI chr 8:64,379,149...64,379,257
Ensembl chr 8:64,379,149...64,379,257 		JBrowse link
G MIR182 microRNA 182 acts_upstream_of_or_within ISO (PMID:23341629) MGI PMID:23341629 NCBI chr 7:129,770,383...129,770,492
Ensembl chr 7:129,770,383...129,770,492 		JBrowse link
G MIR183 microRNA 183 acts_upstream_of_or_within ISO (PMID:23341629) MGI PMID:23341629 NCBI chr 7:129,774,905...129,775,014
Ensembl chr 7:129,774,905...129,775,014 		JBrowse link
G MIR96 microRNA 96 acts_upstream_of_or_within ISO (PMID:23341629) MGI PMID:23341629 NCBI chr 7:129,774,692...129,774,769
Ensembl chr 7:129,774,692...129,774,769 		JBrowse link
G PDE6C phosphodiesterase 6C acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:93,612,537...93,666,010
Ensembl chr10:93,612,537...93,666,010 		JBrowse link
G RORB RAR related orphan receptor B involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:74,497,335...74,693,177
Ensembl chr 9:74,497,335...74,693,177 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:54,559,185...54,871,234
Ensembl chr 8:54,509,422...54,871,720 		JBrowse link
G THRB thyroid hormone receptor beta acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr 3:24,117,153...24,495,708
Ensembl chr 3:24,117,153...24,495,756 		JBrowse link
G THY1 Thy-1 cell surface antigen involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr11:119,415,476...119,424,985
Ensembl chr11:119,415,476...119,424,985 		JBrowse link
G USH1C USH1 protein network component harmonin involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:17,493,900...17,544,416
Ensembl chr11:17,493,895...17,544,416 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:76,344,474...76,348,415
Ensembl chr12:76,344,474...76,348,415 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:109,603,091...109,619,616
Ensembl chr 1:109,603,091...109,619,929 		JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048 		JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chr 6:135,283,532...135,497,740
Ensembl chr 6:135,283,407...135,498,434 		JBrowse link
G ALMS1 ALMS1 centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:16000322) MGI PMID:16000322 NCBI chr 2:73,385,758...73,609,919
Ensembl chr 2:73,385,758...73,625,166 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 involved_in
acts_upstream_of_or_within		 ISS
IEA		 BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr15:72,686,207...72,738,473
Ensembl chr15:72,686,186...72,742,006 		JBrowse link
G BHLHE23 basic helix-loop-helix family member e23 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:63,005,927...63,006,964
Ensembl chr20:63,005,927...63,007,035 		JBrowse link
G CFH complement factor H acts_upstream_of_or_within ISO (PMID:17921253) MGI PMID:17921253 NCBI chr 1:196,652,043...196,747,504
Ensembl chr 1:196,651,754...196,752,476 		JBrowse link
G MIAT myocardial infarction associated transcript acts_upstream_of_or_within ISO (PMID:16877424) MGI PMID:16877424 NCBI chr22:26,646,429...26,676,478
Ensembl chr22:26,646,411...26,676,478 		JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:42,536,241...42,544,449
Ensembl chr17:42,536,241...42,544,449 		JBrowse link
G NRL neural retina leucine zipper involved_in
acts_upstream_of_or_within		 IBA
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr14:24,078,662...24,114,949
Ensembl chr14:24,078,662...24,115,010 		JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:84,668,522...85,027,054
Ensembl chr 9:84,668,375...85,095,751 		JBrowse link
G RORB RAR related orphan receptor B involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:74,497,335...74,693,177
Ensembl chr 9:74,497,335...74,693,177 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:54,559,185...54,871,234
Ensembl chr 8:54,509,422...54,871,720 		JBrowse link
G SAMD11 sterile alpha motif domain containing 11 involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:923,923...944,574
Ensembl chr 1:923,923...944,575 		JBrowse link
G SAMD7 sterile alpha motif domain containing 7 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:169,911,572...169,939,175
Ensembl chr 3:169,911,572...169,939,175 		JBrowse link
G TRPM1 transient receptor potential cation channel subfamily M member 1 acts_upstream_of_or_within ISO (PMID:19966281) MGI PMID:19966281 NCBI chr15:31,001,065...31,161,160
Ensembl chr15:31,001,065...31,161,160 		JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:76,344,474...76,348,415
Ensembl chr12:76,344,474...76,348,415 		JBrowse link
G CNTF ciliary neurotrophic factor acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr11:58,622,665...58,625,733
Ensembl chr11:58,622,665...58,625,733 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:109,603,091...109,619,616
Ensembl chr 1:109,603,091...109,619,929 		JBrowse link
G NDP norrin cystine knot growth factor NDP acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:43,948,776...43,973,390
Ensembl chr  X:43,948,776...43,973,395 		JBrowse link
G PTN pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chr 7:137,227,341...137,343,733
Ensembl chr 7:137,227,341...137,343,774 		JBrowse link
G RORB RAR related orphan receptor B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:74,497,335...74,693,177
Ensembl chr 9:74,497,335...74,693,177 		JBrowse link
G SOX8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 (PMID:19490914) UniProt
MGI
Ensembl		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr16:981,770...986,979
Ensembl chr16:981,444...986,979 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 (PMID:19490914) UniProt
MGI
Ensembl		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:42,313,324...42,388,442
Ensembl chr17:42,313,324...42,388,568 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 1:10,636,604...10,796,646
Ensembl chr 1:10,636,604...10,796,650 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 27142
    cellular process 19785
      cellular developmental process 5253
        cell differentiation 5252
          neuron differentiation 1788
            photoreceptor cell differentiation 100
              eye photoreceptor cell differentiation + 76
              negative regulation of photoreceptor cell differentiation + 7
              ocellus photoreceptor cell differentiation + 0
              photoreceptor cell development + 75
              photoreceptor cell fate commitment + 3
              positive regulation of photoreceptor cell differentiation + 2
              regulation of photoreceptor cell differentiation + 14
Path 2
Term Annotations click to browse term
  biological_process 27142
    developmental process 7762
      anatomical structure development 7145
        multicellular organism development 5701
          system development 4975
            nervous system development 3107
              neurogenesis 2174
                generation of neurons 1869
                  neuron differentiation 1788
                    photoreceptor cell differentiation 100
                      eye photoreceptor cell differentiation + 76
                      negative regulation of photoreceptor cell differentiation + 7
                      ocellus photoreceptor cell differentiation + 0
                      photoreceptor cell development + 75
                      photoreceptor cell fate commitment + 3
                      positive regulation of photoreceptor cell differentiation + 2
                      regulation of photoreceptor cell differentiation + 14
paths to the root