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ONTOLOGY REPORT - ANNOTATIONS

Term:photoreceptor cell differentiation
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Accession:GO:0046530 term browser browse the term
Definition:The specialization of organization of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light. An example of this process is found in Drosophila melanogaster.
Synonyms:alt_id: GO:0007467

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photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:71,921,816...71,925,164
Ensembl chr11:71,921,893...71,924,551 		JBrowse link
G CFH complement factor H acts_upstream_of_or_within ISO (PMID:26149919), (PMID:30705315) MGI PMID:26149919 PMID:30705315 NCBI chr25:32,557,697...32,744,763 JBrowse link
G ELP6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within ISO (PMID:27715390) MGI PMID:27715390 NCBI chr22:8,899,078...8,929,072 JBrowse link
G ELP6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr22:8,912,014...8,928,929 JBrowse link
G EPG5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:34,946,778...35,065,449
Ensembl chr18:34,946,796...35,060,595 		JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PROM1 prominin 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr27:34,093,699...34,243,630
Ensembl chr27:34,129,532...34,243,778 		JBrowse link
G ROM1 retinal outer segment membrane protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:11,289,819...11,292,200
Ensembl chr 1:11,289,818...11,291,890 		JBrowse link
G SDK2 sidekick cell adhesion molecule 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:47,996,688...48,305,858
Ensembl chr16:48,132,769...48,301,648 		JBrowse link
G SLC4A7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (PMID:12808454) MGI PMID:12808454 NCBI chr15:71,942,498...72,047,781
Ensembl chr15:71,961,350...72,047,617 		JBrowse link
G TTC8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr24:66,483,808...66,539,717
Ensembl chr24:66,483,864...66,539,142 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:104,960,296...104,966,596
Ensembl chr10:104,960,120...104,966,585 		JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chr13:37,918,902...38,138,838
Ensembl chr13:37,924,440...38,139,366 		JBrowse link
G CRB1 crumbs cell polarity complex component 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr25:31,710,712...32,143,121
Ensembl chr25:31,906,803...32,088,995 		JBrowse link
G DZANK1 double zinc ribbon and ankyrin repeat domains 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:47,433,137...47,528,267
Ensembl chr 2:47,432,842...47,526,554 		JBrowse link
G FSCN2 fascin actin-bundling protein 2, retinal acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:73,472,582...73,482,440
Ensembl chr16:73,474,519...73,481,967 		JBrowse link
G GABRR2 gamma-aminobutyric acid type A receptor subunit rho2 NOT|acts_upstream_of_or_within ISO (PMID:12019334) MGI PMID:12019334 NCBI chr13:14,015,862...14,074,742
Ensembl chr13:14,016,672...14,073,757 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr22:11,577,192...11,582,789
Ensembl chr22:11,577,997...11,581,223 		JBrowse link
G GNGT1 G protein subunit gamma transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr21:55,113,838...55,118,113 JBrowse link
G MFRP membrane frizzled-related protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:110,720,520...110,728,529
Ensembl chr 1:110,720,530...110,725,483 		JBrowse link
G NR2E3 nuclear receptor subfamily 2 group E member 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr26:11,648,675...11,655,408
Ensembl chr26:11,648,758...11,654,850 		JBrowse link
G OLFM3 olfactomedin 3 ISO RGD PMID:12019210 RGD:633402 NCBI chr20:31,365,222...31,565,127
Ensembl chr20:31,530,708...31,562,665 		JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:33,386,165...33,414,605
Ensembl chr 1:33,392,970...33,414,587 		JBrowse link
G PDGFB platelet derived growth factor subunit B acts_upstream_of_or_within ISO (PMID:25224828) MGI PMID:25224828 NCBI chr19:21,865,792...21,888,068
Ensembl chr19:21,863,768...21,886,395 		JBrowse link
G POC5 POC5 centriolar protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:69,999,522...70,035,860
Ensembl chr 4:69,999,904...70,035,799 		JBrowse link
G PRDM1 PR/SET domain 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:67,695,436...67,719,487
Ensembl chr13:67,695,309...67,718,931 		JBrowse link
G PRKCI protein kinase C iota acts_upstream_of_or_within ISO (PMID:16267237) MGI PMID:16267237 NCBI chr15:19,103,682...19,180,689 JBrowse link
G PRKCI protein kinase C iota acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr15:19,101,142...19,148,018 JBrowse link
G RDH13 retinol dehydrogenase 13 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:47,634,909...47,652,829
Ensembl chr 6:47,636,094...47,652,772 		JBrowse link
G RORB RAR related orphan receptor B involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:85,545,609...85,735,804
Ensembl chr12:85,545,608...85,732,780 		JBrowse link
G RPGR retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO (PMID:12651948) MGI PMID:12651948 NCBI chr 9:30,008,681...30,033,475 JBrowse link
G RPGRIP1 RPGR interacting protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr29:21,769,366...21,822,346
Ensembl chr29:21,762,809...21,822,249 		JBrowse link
G TH tyrosine hydroxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:1,969,194...1,977,263
Ensembl chr 1:1,966,460...1,977,218 		JBrowse link
G TULP1 TUB like protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:36,610,749...36,625,590
Ensembl chr17:36,611,171...36,625,279 		JBrowse link
G VEGFA vascular endothelial growth factor A acts_upstream_of_or_within ISO (PMID:16251428) MGI PMID:16251428 NCBI chr17:28,377,959...28,394,508 JBrowse link
G VEGFA vascular endothelial growth factor A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr17:28,379,880...28,393,995 JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGTPBP1 ATP/GTP binding carboxypeptidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:96,342,193...96,534,981
Ensembl chr12:96,342,759...96,534,800 		JBrowse link
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr15:54,291,843...54,480,733 JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:14625556) MGI PMID:14625556 NCBI chr24:33,975,043...33,984,816 JBrowse link
negative regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNTF ciliary neurotrophic factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:14,724,562...14,730,698
Ensembl chr 1:14,728,383...14,730,150 		JBrowse link
G DLX1 distal-less homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:57,586,452...57,599,071
Ensembl chr10:57,590,838...57,595,266 		JBrowse link
G DLX2 distal-less homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:57,604,989...57,609,487
Ensembl chr10:57,606,084...57,608,079 		JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:1,656,815...1,707,566
Ensembl chr12:1,656,918...1,709,585 		JBrowse link
G SOX8 SRY-box transcription factor 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:877,988...883,278
Ensembl chr 5:878,217...881,662 		JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:49,519,749...49,523,967
Ensembl chr16:49,518,185...49,523,898 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr20:120,986,451...121,144,311 JBrowse link
photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL3 ARF like GTPase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:95,703,648...95,737,785 JBrowse link
G DCX doublecortin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:99,106,291...99,220,479
Ensembl chr  X:99,120,505...99,220,237 		JBrowse link
G FAM151B family with sequence similarity 151 member B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:74,652,807...74,702,552
Ensembl chr 4:74,652,817...74,702,107 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:50,743,699...50,837,089
Ensembl chr 8:50,627,957...50,685,911
Ensembl chr 8:50,627,957...50,685,911 		JBrowse link
G RP1L1 RP1 like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:8,479,768...8,499,497 JBrowse link
photoreceptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:7,737,887...7,765,022
Ensembl chr 1:7,737,578...7,764,732 		JBrowse link
G CABP4 calcium binding protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:6,804,761...6,810,277
Ensembl chr 1:6,805,193...6,808,456 		JBrowse link
G CDHR1 cadherin related family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:47,611,969...47,638,846
Ensembl chr 9:47,613,257...47,636,794 		JBrowse link
G CFAP418 cilia and flagella associated protein 418 involved_in ISO (PMID:29440555) UniProt PMID:29440555 NCBI chr 8:90,211,305...90,235,121
Ensembl chr 8:90,213,965...90,235,216 		JBrowse link
G GRK1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within ISO (PMID:10097103) MGI PMID:10097103 NCBI chr 3:91,633,902...91,655,989
Ensembl chr 3:91,636,813...91,653,521 		JBrowse link
G MFSD2A MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:92,926,217...92,941,191
Ensembl chr20:92,926,067...92,941,159 		JBrowse link
G RABL2B RAB, member of RAS oncogene family like 2B involved_in ISO (PMID:28625565) UniProt PMID:28625565 NCBI chr19:33,247,315...33,261,631 JBrowse link
photoreceptor cell outer segment organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:20592197)
(PMID:20081859)		 MGI
UniProt		 PMID:20081859 PMID:20592197 NCBI chr13:37,918,902...38,138,838
Ensembl chr13:37,924,440...38,139,366 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr26:10,742,982...10,799,615
Ensembl chr26:10,743,850...10,775,908 		JBrowse link
G CDHR1 cadherin related family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:47,611,969...47,638,846
Ensembl chr 9:47,613,257...47,636,794 		JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 acts_upstream_of_or_within ISO (PMID:23178122) MGI PMID:23178122 NCBI chr 5:43,814,500...43,903,323 JBrowse link
G CRB1 crumbs cell polarity complex component 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr25:31,710,712...32,143,121
Ensembl chr25:31,906,803...32,088,995 		JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:1,419,432...1,523,342
Ensembl chr 5:1,415,664...1,521,843 		JBrowse link
G IFT20 intraflagellar transport 20 acts_upstream_of_or_within ISO (PMID:21307337) MGI PMID:21307337 NCBI chr16:22,094,383...22,102,234 JBrowse link
G IFT20 intraflagellar transport 20 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr16:22,094,003...22,098,452 JBrowse link
G MFSD2A MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:92,926,217...92,941,191
Ensembl chr20:92,926,067...92,941,159 		JBrowse link
G NPHP1 nephrocystin 1 involved_in ISO (PMID:20081859) UniProt PMID:20081859 NCBI chr14:13,520,573...13,589,980
Ensembl chr14:13,520,541...13,589,146 		JBrowse link
G NPHP4 nephrocystin 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:125,739,075...125,878,088
Ensembl chr20:125,744,295...125,874,482 		JBrowse link
G PCARE photoreceptor cilium actin regulator involved_in
acts_upstream_of_or_within		 IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:78,528,526...78,540,067 JBrowse link
G PRPH2 peripherin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:29,429,876...29,456,013
Ensembl chr17:29,430,545...29,453,636 		JBrowse link
G ROM1 retinal outer segment membrane protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:11,289,819...11,292,200
Ensembl chr 1:11,289,818...11,291,890 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:50,743,699...50,837,089
Ensembl chr 8:50,627,957...50,685,911
Ensembl chr 8:50,627,957...50,685,911 		JBrowse link
G TMEM67 transmembrane protein 67 ISO RGD PMID:23516626 RGD:11535084 NCBI chr 8:88,726,783...88,818,111
Ensembl chr 8:88,726,837...88,792,049 		JBrowse link
positive regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRX cone-rod homeobox ISO RGD PMID:16799048 RGD:1600973 NCBI chr 6:41,125,912...41,133,478
Ensembl chr 6:41,126,125...41,132,951 		JBrowse link
G SHH sonic hedgehog signaling molecule ISO RGD PMID:9236238 RGD:2306313 NCBI chr21:123,929,937...123,942,451
Ensembl chr21:123,932,900...123,942,395 		JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chr13:37,918,902...38,138,838
Ensembl chr13:37,924,440...38,139,366 		JBrowse link
G CABP4 calcium binding protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:6,804,761...6,810,277
Ensembl chr 1:6,805,193...6,808,456 		JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chr14:2,039,281...2,124,527
Ensembl chr14:2,096,232...2,123,231 		JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:14,756,897...14,782,131
Ensembl chr12:14,758,618...14,779,514 		JBrowse link
G DIO3 iodothyronine deiodinase 3 acts_upstream_of_or_within ISO (PMID:20203194) MGI PMID:20203194 NCBI chr24:79,538,264...79,544,448 JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:23,927,025...23,942,590
Ensembl chr20:23,933,737...23,942,490 		JBrowse link
G HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chr 4:44,029,173...44,443,669 JBrowse link
G PDE6C phosphodiesterase 6C acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:86,850,500...86,904,853
Ensembl chr 9:86,851,867...86,904,481 		JBrowse link
G RORB RAR related orphan receptor B involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:85,545,609...85,735,804
Ensembl chr12:85,545,608...85,732,780 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:50,743,699...50,837,089
Ensembl chr 8:50,627,957...50,685,911
Ensembl chr 8:50,627,957...50,685,911 		JBrowse link
G THRB thyroid hormone receptor beta acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr15:68,797,410...69,161,256
Ensembl chr15:68,802,078...68,902,292 		JBrowse link
G THY1 Thy-1 cell surface antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:110,787,213...110,791,536
Ensembl chr 1:110,783,877...110,791,569 		JBrowse link
G USH1C USH1 protein network component harmonin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:47,428,181...47,477,578
Ensembl chr 1:47,437,596...47,477,834 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:71,921,816...71,925,164
Ensembl chr11:71,921,893...71,924,551 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr22:11,577,192...11,582,789
Ensembl chr22:11,577,997...11,581,223 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:23,927,025...23,942,590
Ensembl chr20:23,933,737...23,942,490 		JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr12:1,656,815...1,707,566
Ensembl chr12:1,656,918...1,709,585 		JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chr13:37,918,902...38,138,838
Ensembl chr13:37,924,440...38,139,366 		JBrowse link
G ALMS1 ALMS1 centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:16000322) MGI PMID:16000322 NCBI chr14:33,571,894...33,795,404
Ensembl chr14:33,573,296...33,789,549 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr26:10,742,982...10,799,615
Ensembl chr26:10,743,850...10,775,908 		JBrowse link
G BHLHE23 basic helix-loop-helix family member e23 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:1,215,909...1,221,960
Ensembl chr 2:1,216,206...1,216,883 		JBrowse link
G CFH complement factor H acts_upstream_of_or_within ISO (PMID:17921253) MGI PMID:17921253 NCBI chr25:32,557,697...32,744,763 JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:63,735,411...63,744,365 JBrowse link
G NRL neural retina leucine zipper involved_in
acts_upstream_of_or_within		 IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr24:1,064,266...1,100,995
Ensembl chr24:1,064,664...1,066,278 		JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:95,477,612...95,836,734
Ensembl chr12:95,479,447...95,620,364 		JBrowse link
G RORB RAR related orphan receptor B involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:85,545,609...85,735,804
Ensembl chr12:85,545,608...85,732,780 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:50,743,699...50,837,089
Ensembl chr 8:50,627,957...50,685,911
Ensembl chr 8:50,627,957...50,685,911 		JBrowse link
G RPGRIP1 RPGR interacting protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr29:21,769,366...21,822,346
Ensembl chr29:21,762,809...21,822,249 		JBrowse link
G RPGRIP1L RPGRIP1 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:39,388,632...39,487,223
Ensembl chr 5:39,387,107...39,487,092 		JBrowse link
G SAMD11 sterile alpha motif domain containing 11 involved_in ISO (PMID:33603070) UniProt PMID:33603070 NCBI chr20:130,488,810...130,510,621 JBrowse link
G SAMD7 sterile alpha motif domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:19,457,823...19,486,250
Ensembl chr15:19,458,474...19,477,487 		JBrowse link
G TRPM1 transient receptor potential cation channel subfamily M member 1 acts_upstream_of_or_within ISO (PMID:19966281) MGI PMID:19966281 NCBI chr26:51,560,992...51,660,857
Ensembl chr26:51,586,041...51,660,171 		JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:71,921,816...71,925,164
Ensembl chr11:71,921,893...71,924,551 		JBrowse link
G CNTF ciliary neurotrophic factor acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr 1:14,724,562...14,730,698
Ensembl chr 1:14,728,383...14,730,150 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr22:11,577,192...11,582,789
Ensembl chr22:11,577,997...11,581,223 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:23,927,025...23,942,590
Ensembl chr20:23,933,737...23,942,490 		JBrowse link
G NDP norrin cystine knot growth factor NDP acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:41,122,064...41,148,097
Ensembl chr  X:41,121,874...41,147,567 		JBrowse link
G PTN pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chr21:105,911,171...106,027,108
Ensembl chr21:105,911,120...106,027,215 		JBrowse link
G RORB RAR related orphan receptor B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:85,545,609...85,735,804
Ensembl chr12:85,545,608...85,732,780 		JBrowse link
G SOX8 SRY-box transcription factor 8 acts_upstream_of_or_within ISO
IEA		 (PMID:19490914) MGI
Ensembl		 PMID:19490914 GO_REF:0000107 NCBI chr 5:877,988...883,278
Ensembl chr 5:878,217...881,662 		JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO
IEA		 (PMID:19490914) MGI
Ensembl		 PMID:19490914 GO_REF:0000107 NCBI chr16:49,519,749...49,523,967
Ensembl chr16:49,518,185...49,523,898 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:63,877,884...63,957,894
Ensembl chr16:63,922,862...63,957,984 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr20:120,986,451...121,144,311 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19829
    cellular process 19347
      cellular developmental process 4609
        cell differentiation 4608
          neuron differentiation 1715
            photoreceptor cell differentiation 90
              eye photoreceptor cell differentiation + 64
              negative regulation of photoreceptor cell differentiation + 7
              ocellus photoreceptor cell differentiation + 0
              photoreceptor cell development + 66
              photoreceptor cell fate commitment + 3
              positive regulation of photoreceptor cell differentiation + 2
              regulation of photoreceptor cell differentiation + 9
Path 2
Term Annotations click to browse term
  biological_process 19829
    developmental process 6875
      anatomical structure development 6451
        multicellular organism development 5184
          system development 4494
            nervous system development 2817
              neurogenesis 2077
                generation of neurons 1799
                  neuron differentiation 1715
                    photoreceptor cell differentiation 90
                      eye photoreceptor cell differentiation + 64
                      negative regulation of photoreceptor cell differentiation + 7
                      ocellus photoreceptor cell differentiation + 0
                      photoreceptor cell development + 66
                      photoreceptor cell fate commitment + 3
                      positive regulation of photoreceptor cell differentiation + 2
                      regulation of photoreceptor cell differentiation + 9
paths to the root