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ONTOLOGY REPORT - ANNOTATIONS

Term:photoreceptor cell differentiation
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Accession:GO:0046530 term browser browse the term
Definition:The specialization of organization of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light. An example of this process is found in Drosophila melanogaster.
Synonyms:alt_id: GO:0007467


show annotations for term's descendants           Sort by:
photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CFH complement factor H acts_upstream_of_or_within ISO (PMID:26149919), (PMID:30705315) MGI PMID:26149919 PMID:30705315 NCBI chr38:2,878,677...2,956,226 JBrowse link
G EPG5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within ISO (PMID:31628468) MGI PMID:31628468 NCBI chr 7:45,215,232...45,318,736
Ensembl chr 7:45,215,324...45,314,630 		JBrowse link
G LOC100688777 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36700052) MGI PMID:36700052 NCBI chr15:19,302,988...19,334,763
Ensembl chr15:19,331,876...19,335,583 		JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PROM1 prominin 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:64,229,487...64,362,346
Ensembl chr 3:64,260,685...64,382,009 		JBrowse link
G ROM1 retinal outer segment membrane protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20300562) Ensembl
MGI		 PMID:20300562 GO_REF:0000107 NCBI chr18:54,025,603...54,027,803
Ensembl chr18:54,025,606...54,027,375 		JBrowse link
G SDK2 sidekick cell adhesion molecule 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:6,788,305...6,868,052
Ensembl chr 9:6,734,504...6,867,078 		JBrowse link
G SLC4A7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (PMID:12808454) MGI PMID:12808454 NCBI chr23:16,710,649...16,788,277
Ensembl chr23:16,710,701...16,785,541 		JBrowse link
G TTC8 tetratricopeptide repeat domain 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21646512) Ensembl
MGI		 PMID:21646512 GO_REF:0000107 NCBI chr 8:60,061,670...60,115,464
Ensembl chr 8:60,061,732...60,115,075 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18582859) Ensembl
MGI		 PMID:18582859 GO_REF:0000107 NCBI chr37:25,616,942...25,622,989 JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 1:27,966,101...28,199,163
Ensembl chr 1:27,998,874...28,198,351 		JBrowse link
G CRB1 crumbs cell polarity complex component 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12915475)
(PMID:21052544)		 Ensembl
MGI		 PMID:12915475 PMID:21052544 GO_REF:0000107 NCBI chr 7:5,277,394...5,490,542
Ensembl chr 7:5,277,394...5,490,470 		JBrowse link
G DZANK1 double zinc ribbon and ankyrin repeat domains 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:4,727,996...4,805,799
Ensembl chr24:4,730,817...4,888,622 		JBrowse link
G FSCN2 fascin actin-bundling protein 2, retinal involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16043865) Ensembl
MGI		 PMID:16043865 GO_REF:0000107 NCBI chr 9:616,088...622,152
Ensembl chr 9:617,609...621,882 		JBrowse link
G GABRR2 gamma-aminobutyric acid type A receptor subunit rho2 NOT|acts_upstream_of_or_within ISO (PMID:12019334) MGI PMID:12019334 NCBI chr12:48,492,607...48,537,961
Ensembl chr12:48,431,379...48,538,037 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO (PMID:16249514) MGI PMID:16249514 NCBI chr20:39,128,244...39,133,280
Ensembl chr20:39,128,244...39,133,280 		JBrowse link
G GNGT1 G protein subunit gamma transducin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18367617) Ensembl
MGI		 PMID:18367617 GO_REF:0000107 NCBI chr14:19,081,676...19,420,261
Ensembl chr14:19,415,510...19,420,255 		JBrowse link
G MFRP membrane frizzled-related protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21052544) Ensembl
MGI		 PMID:21052544 GO_REF:0000107 NCBI chr 5:14,555,619...14,561,577
Ensembl chr 5:14,556,065...14,561,623 		JBrowse link
G NR2E3 nuclear receptor subfamily 2 group E member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21052544) Ensembl
MGI		 PMID:21052544 GO_REF:0000107 NCBI chr30:35,375,181...35,382,398 JBrowse link
G OLFM3 olfactomedin 3 ISO RGD PMID:12019210 RGD:633402 NCBI chr 6:48,259,403...48,453,110
Ensembl chr 6:48,259,545...48,446,363 		JBrowse link
G PAX6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12648492) Ensembl
MGI		 PMID:12648492 GO_REF:0000107
G PDGFB platelet derived growth factor subunit B acts_upstream_of_or_within ISO (PMID:25224828) MGI PMID:25224828 NCBI chr10:25,798,877...25,819,422
Ensembl chr10:25,798,938...25,817,746 		JBrowse link
G PRDM1 PR/SET domain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20463215) Ensembl
MGI		 PMID:20463215 GO_REF:0000107 NCBI chr12:63,454,242...63,495,278
Ensembl chr12:63,470,974...63,495,579 		JBrowse link
G PRKCI protein kinase C iota involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16267237) Ensembl
MGI		 PMID:16267237 GO_REF:0000107 NCBI chr34:34,767,066...34,839,823
Ensembl chr34:34,766,801...34,837,605 		JBrowse link
G RDH13 retinol dehydrogenase 13 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22605914) Ensembl
MGI		 PMID:22605914 GO_REF:0000107 NCBI chr 1:102,539,363...102,552,749
Ensembl chr 1:102,539,124...102,554,027 		JBrowse link
G RORB RAR related orphan receptor B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:83,470,569...83,666,200
Ensembl chr 1:83,476,816...83,666,061 		JBrowse link
G RPGR retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO (PMID:12651948) MGI PMID:12651948 NCBI chr  X:33,056,371...33,105,036
Ensembl chr  X:32,745,020...33,330,841 		JBrowse link
G RPGRIP1 RPGR interacting protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12651948) Ensembl
MGI		 PMID:12651948 GO_REF:0000107 NCBI chr15:18,316,887...18,388,724
Ensembl chr15:18,316,887...18,387,735 		JBrowse link
G TH tyrosine hydroxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:46,327,136...46,334,973
Ensembl chr18:46,327,137...46,335,602 		JBrowse link
G TULP1 TUB like protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:4,632,580...4,644,313
Ensembl chr12:4,633,098...4,645,994 		JBrowse link
G VEGFA vascular endothelial growth factor A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16251428) Ensembl
MGI		 PMID:16251428 GO_REF:0000107 NCBI chr12:12,209,032...12,224,978
Ensembl chr12:12,208,231...12,224,965 		JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGTPBP1 ATP/GTP binding carboxypeptidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:73,853,491...74,030,075
Ensembl chr 1:73,887,934...74,107,312 		JBrowse link
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr23:32,441,130...32,628,588
Ensembl chr23:32,471,921...32,626,548 		JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:14625556) MGI PMID:14625556 NCBI chr 8:32,435,169...32,445,093
Ensembl chr 8:32,435,863...32,445,446 		JBrowse link
negative regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNTF ciliary neurotrophic factor acts_upstream_of_or_within ISO (PMID:15207851) MGI PMID:15207851 NCBI chr18:37,758,148...37,765,698 JBrowse link
G DLX1 distal-less homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr36:16,485,158...16,489,397
Ensembl chr36:16,484,859...16,487,886 		JBrowse link
G DLX2 distal-less homeobox 2 involved_in ISO (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chr36:16,499,009...16,502,365
Ensembl chr36:16,484,302...16,502,510 		JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16452096) Ensembl
MGI		 PMID:16452096 GO_REF:0000107 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277 		JBrowse link
G SOX8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19490914) Ensembl
MGI		 PMID:19490914 GO_REF:0000107 NCBI chr 6:39,667,941...39,672,716
Ensembl chr 6:39,668,232...39,672,638 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 (PMID:19490914) UniProt
MGI
Ensembl		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 2:85,194,640...85,218,068
Ensembl chr 2:85,176,161...85,232,920 		JBrowse link
photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL3 ADP ribosylation factor like GTPase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:15,152,762...15,189,043
Ensembl chr28:15,142,485...15,188,903 		JBrowse link
G FAM151B family with sequence similarity 151 member B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:26,614,337...26,646,997
Ensembl chr 3:26,615,693...26,647,372 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in ISS
IBA
IEA		 UniProt
GO_Central
TreeGrafter
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr29:6,079,519...6,136,009
Ensembl chr29:6,079,377...6,136,009 		JBrowse link
G RP1L1 RP1 like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:27,317,102...27,332,075
Ensembl chr25:27,325,658...27,330,556 		JBrowse link
photoreceptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS1 Bardet-Biedl syndrome 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18032602) Ensembl
MGI		 PMID:18032602 GO_REF:0000107 NCBI chr18:50,816,126...50,835,354 JBrowse link
G CABP4 calcium binding protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16249514) Ensembl
MGI		 PMID:16249514 GO_REF:0000107 NCBI chr18:50,014,698...50,017,854
Ensembl chr18:50,014,698...50,017,854 		JBrowse link
G CDHR1 cadherin related family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:32,435,364...32,459,181
Ensembl chr 4:32,439,148...32,459,192 		JBrowse link
G CFAP418 cilia and flagella associated protein 418 involved_in ISO (MGI:6148650|PMID:29440555) UniProt PMID:29440555 MGI:6148650 NCBI chr29:39,856,910...39,869,759
Ensembl chr29:39,856,948...39,869,112 		JBrowse link
G GRK1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within ISO (PMID:10097103) MGI PMID:10097103 NCBI chr22:60,911,953...60,929,330
Ensembl chr22:60,911,953...60,926,146 		JBrowse link
G MFSD2A MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5789479|PMID:27008858) ARUK-UCL
Ensembl		 PMID:27008858 GO_REF:0000107 MGI:5789479 NCBI chr15:2,966,433...2,979,030
Ensembl chr15:2,966,461...2,978,968 		JBrowse link
G RABL2B RAB, member of RAS oncogene family like 2B involved_in ISO (MGI:6094395|PMID:28625565) UniProt PMID:28625565 MGI:6094395 NCBI chr10:16,555,009...16,571,207 JBrowse link
photoreceptor cell outer segment organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:4437526|PMID:20081859)
(PMID:20592197)		 UniProt
MGI		 PMID:20081859 PMID:20592197 MGI:4437526 NCBI chr 1:27,966,101...28,199,163
Ensembl chr 1:27,998,874...28,198,351 		JBrowse link
G ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23178122) Ensembl
MGI		 PMID:23178122 GO_REF:0000107 NCBI chr30:36,058,932...36,109,206
Ensembl chr30:35,927,233...36,108,381 		JBrowse link
G CDHR1 cadherin related family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:32,435,364...32,459,181
Ensembl chr 4:32,439,148...32,459,192 		JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23178122) Ensembl
MGI		 PMID:23178122 GO_REF:0000107 NCBI chr 2:58,574,552...58,641,631
Ensembl chr 2:58,574,552...58,640,812 		JBrowse link
G CRB1 crumbs cell polarity complex component 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12915475) Ensembl
MGI		 PMID:12915475 GO_REF:0000107 NCBI chr 7:5,277,394...5,490,542
Ensembl chr 7:5,277,394...5,490,470 		JBrowse link
G IFT140 intraflagellar transport 140 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24619649) Ensembl
MGI		 PMID:24619649 GO_REF:0000107 NCBI chr 6:39,262,887...39,308,912
Ensembl chr 6:39,295,045...39,308,758 		JBrowse link
G IFT20 intraflagellar transport 20 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21307337) Ensembl
MGI		 PMID:21307337 GO_REF:0000107 NCBI chr 9:42,581,117...42,587,830
Ensembl chr 9:42,581,433...42,587,804 		JBrowse link
G MFSD2A MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5789479|PMID:27008858) ARUK-UCL
Ensembl		 PMID:27008858 GO_REF:0000107 MGI:5789479 NCBI chr15:2,966,433...2,979,030
Ensembl chr15:2,966,461...2,978,968 		JBrowse link
G NPHP1 nephrocystin 1 involved_in ISO (MGI:4437526|PMID:20081859) UniProt PMID:20081859 MGI:4437526 NCBI chr17:35,076,527...35,136,674
Ensembl chr17:35,076,636...35,136,425 		JBrowse link
G NPHP4 nephrocystin 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21078623) Ensembl
MGI		 PMID:21078623 GO_REF:0000107 NCBI chr 5:59,819,236...59,936,220
Ensembl chr 5:59,814,274...59,929,386 		JBrowse link
G PCARE photoreceptor cilium actin regulator involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:25616964) Ensembl
MGI
TreeGrafter
GO_Central		 PMID:25616964 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr17:22,898,998...22,910,639
Ensembl chr17:22,898,998...22,910,639 		JBrowse link
G PRPH2 peripherin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28053051) Ensembl
MGI		 PMID:28053051 GO_REF:0000107 NCBI chr12:11,299,236...11,316,175
Ensembl chr12:11,299,236...11,316,175 		JBrowse link
G ROM1 retinal outer segment membrane protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28053051) Ensembl
MGI		 PMID:28053051 GO_REF:0000107 NCBI chr18:54,025,603...54,027,803
Ensembl chr18:54,025,606...54,027,375 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr29:6,079,519...6,136,009
Ensembl chr29:6,079,377...6,136,009 		JBrowse link
G TMEM67 transmembrane protein 67 ISO RGD PMID:23516626 RGD:11535084 NCBI chr29:38,655,531...38,715,774
Ensembl chr29:38,654,733...38,720,559 		JBrowse link
positive regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRX cone-rod homeobox ISO RGD PMID:16799048 RGD:1600973 NCBI chr 1:108,249,911...108,261,015
Ensembl chr 1:108,249,911...108,261,010 		JBrowse link
G SHH sonic hedgehog signaling molecule ISO RGD PMID:9236238 RGD:2306313 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903 		JBrowse link
regulation of eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARHGAP35 Rho GTPase activating protein 35 involved_in NAS (PMID:12234678) UniProt PMID:12234678 NCBI chr 1:108,952,836...109,034,329
Ensembl chr 1:108,952,562...109,034,337 		JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 1:27,966,101...28,199,163
Ensembl chr 1:27,998,874...28,198,351 		JBrowse link
G CABP4 calcium binding protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16249514) Ensembl
MGI		 PMID:16249514 GO_REF:0000107 NCBI chr18:50,014,698...50,017,854
Ensembl chr18:50,014,698...50,017,854 		JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chr10:44,232,716...44,278,555
Ensembl chr10:44,234,004...44,260,746 		JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:59,427,661...59,450,436
Ensembl chr 9:59,427,569...59,450,434 		JBrowse link
G DIO3 iodothyronine deiodinase 3 acts_upstream_of_or_within ISO (PMID:20203194) MGI PMID:20203194 NCBI chr 8:69,696,779...69,698,880 JBrowse link
G GNAT2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17065522), (PMID:21052544) Ensembl
MGI		 PMID:17065522 PMID:21052544 GO_REF:0000107 NCBI chr 6:42,259,404...42,271,197
Ensembl chr 6:42,259,702...42,268,082 		JBrowse link
G HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21052544) Ensembl
MGI		 PMID:21052544 GO_REF:0000107 NCBI chr 4:64,777,069...65,162,603
Ensembl chr 4:64,775,577...65,160,444 		JBrowse link
G MIR124-1 microRNA mir-124-1 acts_upstream_of_or_within ISO (PMID:21857657) MGI PMID:21857657 NCBI chr25:28,188,264...28,188,322
Ensembl chr25:28,188,250...28,188,334 		JBrowse link
G MIR124-2 microRNA mir-124-2 acts_upstream_of_or_within ISO (PMID:21857657) MGI PMID:21857657 NCBI chr29:14,264,389...14,264,445 JBrowse link
G MIR183 microRNA mir-183 acts_upstream_of_or_within ISO (PMID:23341629) MGI PMID:23341629 NCBI chr14:7,068,542...7,068,603
Ensembl chr14:7,068,519...7,068,625 		JBrowse link
G MIR96 microRNA mir-96 acts_upstream_of_or_within ISO (PMID:23341629) MGI PMID:23341629 NCBI chr14:7,068,754...7,068,842
Ensembl chr14:7,068,754...7,068,842 		JBrowse link
G PDE6C phosphodiesterase 6C involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21052544) Ensembl
MGI		 PMID:21052544 GO_REF:0000107 NCBI chr28:7,839,604...7,887,827
Ensembl chr28:7,839,847...7,887,776 		JBrowse link
G RORB RAR related orphan receptor B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:83,470,569...83,666,200
Ensembl chr 1:83,476,816...83,666,061 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr29:6,079,519...6,136,009
Ensembl chr29:6,079,377...6,136,009 		JBrowse link
G THRB thyroid hormone receptor beta involved_in
acts_upstream_of		 IEA
ISO		 (PMID:20203194) Ensembl
MGI		 PMID:20203194 GO_REF:0000107 NCBI chr23:19,278,650...19,648,547
Ensembl chr23:19,277,493...19,660,283 		JBrowse link
G THY1 Thy-1 cell surface antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:14,503,902...14,509,113
Ensembl chr 5:14,503,902...14,509,113 		JBrowse link
G USH1C USH1 protein network component harmonin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:40,055,786...40,100,685
Ensembl chr21:40,055,730...40,101,430 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chr20:39,128,244...39,133,280
Ensembl chr20:39,128,244...39,133,280 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19815523) Ensembl
MGI		 PMID:19815523 GO_REF:0000107 NCBI chr 6:42,259,404...42,271,197
Ensembl chr 6:42,259,702...42,268,082 		JBrowse link
G LOC100688777 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) MGI PMID:36125046 NCBI chr15:19,302,988...19,334,763
Ensembl chr15:19,331,876...19,335,583 		JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:16452096) Ensembl
MGI		 PMID:16452096 GO_REF:0000107 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277 		JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 1:27,966,101...28,199,163
Ensembl chr 1:27,998,874...28,198,351 		JBrowse link
G ALMS1 ALMS1 centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:16000322) MGI PMID:16000322 NCBI chr17:49,301,397...49,513,729
Ensembl chr17:49,301,606...49,513,625 		JBrowse link
G ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15173597) Ensembl
MGI		 PMID:15173597 GO_REF:0000107 NCBI chr30:36,058,932...36,109,206
Ensembl chr30:35,927,233...36,108,381 		JBrowse link
G BHLHE23 basic helix-loop-helix family member e23 acts_upstream_of_or_within ISO (PMID:17255172) MGI PMID:17255172 NCBI chr24:46,791,368...46,792,019 JBrowse link
G BHLHE23 basic helix-loop-helix family member e23 involved_in IEA Ensembl GO_REF:0000107
G CFH complement factor H acts_upstream_of_or_within ISO (PMID:17921253) MGI PMID:17921253 NCBI chr38:2,878,677...2,956,226 JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17712420) Ensembl
MGI		 PMID:17712420 GO_REF:0000107 NCBI chr 9:20,407,296...20,414,094
Ensembl chr 9:20,407,281...20,414,056 		JBrowse link
G NRL neural retina leucine zipper involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11694879) Ensembl
MGI
TreeGrafter		 PMID:11694879 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:4,086,487...4,090,373
Ensembl chr 8:4,086,508...4,089,216 		JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10516311) Ensembl
MGI		 PMID:10516311 GO_REF:0000107 NCBI chr 1:74,447,927...74,777,910
Ensembl chr 1:74,449,060...74,777,032 		JBrowse link
G RORB RAR related orphan receptor B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:83,470,569...83,666,200
Ensembl chr 1:83,476,816...83,666,061 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr29:6,079,519...6,136,009
Ensembl chr29:6,079,377...6,136,009 		JBrowse link
G RPGRIP1 RPGR interacting protein 1 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr15:18,316,887...18,388,724
Ensembl chr15:18,316,887...18,387,735 		JBrowse link
G RPGRIP1L RPGRIP1 like involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 2:62,080,159...62,179,694
Ensembl chr 2:62,080,080...62,178,284 		JBrowse link
G SAMD11 sterile alpha motif domain containing 11 involved_in ISO (MGI:6512737|PMID:33603070) UniProt PMID:33603070 MGI:6512737 NCBI chr 5:56,119,207...56,175,267
Ensembl chr 5:56,151,171...56,172,055 		JBrowse link
G SAMD7 sterile alpha motif domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr34:34,518,133...34,537,516
Ensembl chr34:34,518,757...34,537,480 		JBrowse link
G TRPM1 transient receptor potential cation channel subfamily M member 1 acts_upstream_of_or_within ISO (PMID:19966281) MGI PMID:19966281 NCBI chr 3:37,860,730...37,949,108
Ensembl chr 3:37,817,339...37,949,108 		JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNTF ciliary neurotrophic factor acts_upstream_of ISO (PMID:15207851) MGI PMID:15207851 NCBI chr18:37,758,148...37,765,698 JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chr20:39,128,244...39,133,280
Ensembl chr20:39,128,244...39,133,280 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19815523) Ensembl
MGI		 PMID:19815523 GO_REF:0000107 NCBI chr 6:42,259,404...42,271,197
Ensembl chr 6:42,259,702...42,268,082 		JBrowse link
G LOC100688777 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) MGI PMID:36125046 NCBI chr15:19,302,988...19,334,763
Ensembl chr15:19,331,876...19,335,583 		JBrowse link
G NDP norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (PMID:9071226) MGI PMID:9071226 NCBI chr  X:37,949,560...37,975,573
Ensembl chr  X:37,950,489...37,975,346 		JBrowse link
G PTN pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chr16:11,283,078...11,382,820
Ensembl chr16:11,283,077...11,382,814 		JBrowse link
G RORB RAR related orphan receptor B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25296752) Ensembl
MGI		 PMID:25296752 GO_REF:0000107 NCBI chr 1:83,470,569...83,666,200
Ensembl chr 1:83,476,816...83,666,061 		JBrowse link
G SOX8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19490914) Ensembl
MGI		 PMID:19490914 GO_REF:0000107 NCBI chr 6:39,667,941...39,672,716
Ensembl chr 6:39,668,232...39,672,638 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 (PMID:19490914) UniProt
Ensembl
MGI		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15207851) Ensembl
MGI		 PMID:15207851 GO_REF:0000107 NCBI chr 9:20,539,660...20,614,631
Ensembl chr 9:20,539,697...20,612,672 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 2:85,194,640...85,218,068
Ensembl chr 2:85,176,161...85,232,920 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17917
    cellular process 16926
      cellular developmental process 4594
        cell differentiation 4593
          neuron differentiation 1713
            photoreceptor cell differentiation 89
              eye photoreceptor cell differentiation + 67
              negative regulation of photoreceptor cell differentiation + 7
              ocellus photoreceptor cell differentiation + 0
              photoreceptor cell development + 67
              photoreceptor cell fate commitment + 3
              positive regulation of photoreceptor cell differentiation + 2
              regulation of photoreceptor cell differentiation + 10
Path 2
Term Annotations click to browse term
  biological_process 17917
    developmental process 6831
      anatomical structure development 6414
        multicellular organism development 5174
          system development 4502
            nervous system development 2788
              neurogenesis 2078
                generation of neurons 1795
                  neuron differentiation 1713
                    photoreceptor cell differentiation 89
                      eye photoreceptor cell differentiation + 67
                      negative regulation of photoreceptor cell differentiation + 7
                      ocellus photoreceptor cell differentiation + 0
                      photoreceptor cell development + 67
                      photoreceptor cell fate commitment + 3
                      positive regulation of photoreceptor cell differentiation + 2
                      regulation of photoreceptor cell differentiation + 10
paths to the root