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ONTOLOGY REPORT - ANNOTATIONS

Term:photoreceptor cell differentiation
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Accession:GO:0046530 term browser browse the term
Definition:The specialization of organization of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light. An example of this process is found in Drosophila melanogaster.
Synonyms:alt_id: GO:0007467

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photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36700052) MGI PMID:36700052 NCBI chrNW_004955405:15,571,458...15,574,568
Ensembl chrNW_004955405:15,571,073...15,574,791 		JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within ISO (PMID:27715390) MGI PMID:27715390 NCBI chrNW_004955420:24,795,416...24,807,790
Ensembl chrNW_004955420:24,795,496...24,811,134 		JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within ISO (PMID:31628468) MGI PMID:31628468 NCBI chrNW_004955402:31,422,848...31,532,189
Ensembl chrNW_004955402:31,422,848...31,532,289 		JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prom1 prominin 1 involved_in ISO (PMID:18654668)
(PMID:19228982)		 BHF-UCL
UniProt		 PMID:18654668 PMID:19228982 NCBI chrNW_004955480:7,955,501...8,059,537
Ensembl chrNW_004955480:7,961,389...8,059,589 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (PMID:20300562) MGI PMID:20300562 NCBI chrNW_004955599:578,165...580,055
Ensembl chrNW_004955599:573,426...579,812 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO (PMID:26287463) UniProt PMID:26287463 NCBI chrNW_004955553:353,190...614,806
Ensembl chrNW_004955553:357,112...614,811 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (PMID:12808454) MGI PMID:12808454 NCBI chrNW_004955430:18,991,615...19,059,590
Ensembl chrNW_004955430:18,991,301...19,067,754 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO (PMID:21646512) MGI PMID:21646512 NCBI chrNW_004955438:11,410,196...11,466,044
Ensembl chrNW_004955438:11,409,982...11,466,523 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:18582859) MGI PMID:18582859 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747 		JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:21052544)
(PMID:12915475)		 MGI PMID:12915475 PMID:21052544 NCBI chrNW_004955406:33,817,754...34,005,937
Ensembl chrNW_004955406:33,817,605...34,005,943 		JBrowse link
G Fscn2 fascin actin-bundling protein 2, retinal acts_upstream_of_or_within ISO (PMID:16043865) MGI PMID:16043865 NCBI chrNW_004955506:1,526,830...1,533,775
Ensembl chrNW_004955506:1,526,830...1,533,775 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO (PMID:16249514) MGI PMID:16249514 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603 		JBrowse link
G Gngt1 G protein subunit gamma transducin 1 acts_upstream_of_or_within ISO (PMID:18367617) MGI PMID:18367617 NCBI chrNW_004955432:10,653,508...10,657,811
Ensembl chrNW_004955432:10,643,674...10,658,933 		JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955412:20,421,935...20,426,760
Ensembl chrNW_004955412:20,421,935...20,426,760 		JBrowse link
G Nr2e3 nuclear receptor subfamily 2 group E member 3 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955450:5,281,707...5,286,260
Ensembl chrNW_004955450:5,281,707...5,286,260 		JBrowse link
G Olfm3 olfactomedin 3 ISO RGD PMID:12019210 RGD:633402 NCBI chrNW_004955435:6,464,283...6,655,695
Ensembl chrNW_004955435:6,462,903...6,655,801 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO (PMID:12648492) MGI PMID:12648492 NCBI chrNW_004955476:10,058,979...10,074,668
Ensembl chrNW_004955476:10,058,961...10,074,162 		JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO (PMID:25224828) MGI PMID:25224828 NCBI chrNW_004955413:25,150,702...25,166,987
Ensembl chrNW_004955413:25,148,062...25,166,987 		JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within ISO (PMID:20463215) MGI PMID:20463215 NCBI chrNW_004955411:31,434,503...31,455,995
Ensembl chrNW_004955411:31,434,503...31,456,056 		JBrowse link
G Prkci protein kinase C iota acts_upstream_of_or_within ISO (PMID:16267237) MGI PMID:16267237 NCBI chrNW_004955420:423,406...486,676
Ensembl chrNW_004955420:423,140...489,592 		JBrowse link
G Rdh13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO (PMID:22605914) MGI PMID:22605914 NCBI chrNW_004955567:1,091,636...1,108,648
Ensembl chrNW_004955567:1,091,636...1,108,732 		JBrowse link
G Rorb RAR related orphan receptor B involved_in ISO (PMID:16574740) UniProt PMID:16574740 NCBI chrNW_004955512:4,362,287...4,541,432
Ensembl chrNW_004955512:4,362,287...4,541,445 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO (PMID:12651948) MGI PMID:12651948 NCBI chrNW_004955601:398,772...453,271 JBrowse link
G Rpgrip1 RPGR interacting protein 1 acts_upstream_of_or_within ISO (PMID:12651948) MGI PMID:12651948 NCBI chrNW_004955550:2,015,319...2,073,627
Ensembl chrNW_004955550:2,021,838...2,073,498 		JBrowse link
G Th tyrosine hydroxylase involved_in ISO (PMID:16445854) BHF-UCL PMID:16445854 NCBI chrNW_004955422:13,943,590...13,951,102
Ensembl chrNW_004955422:13,943,552...13,951,137 		JBrowse link
G Tulp1 TUB like protein 1 involved_in ISO (PMID:19218615) UniProt PMID:19218615 NCBI chrNW_004955437:3,405,218...3,417,079 JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO (PMID:16251428) MGI PMID:16251428 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004955501:2,648,017...2,751,999
Ensembl chrNW_004955501:2,648,017...2,752,057 		JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:14625556) MGI PMID:14625556 NCBI chrNW_004955466:10,755,143...10,764,957
Ensembl chrNW_004955466:10,755,012...10,765,095 		JBrowse link
negative regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cntf ciliary neurotrophic factor acts_upstream_of_or_within ISO (PMID:15207851) MGI PMID:15207851 NCBI chrNW_004955511:3,527,552...3,531,275
Ensembl chrNW_004955511:3,527,552...3,534,348 		JBrowse link
G Dlx1 distal-less homeobox 1 involved_in ISO (PMID:21875655) UniProt PMID:21875655 NCBI chrNW_004955449:2,920,705...2,924,667
Ensembl chrNW_004955449:2,920,478...2,924,667 		JBrowse link
G Dlx2 distal-less homeobox 2 involved_in ISO (PMID:21875655) UniProt PMID:21875655 NCBI chrNW_004955449:2,907,502...2,909,893
Ensembl chrNW_004955449:2,907,436...2,910,816 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:16452096) MGI PMID:16452096 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259 		JBrowse link
G Sox8 SRY-box transcription factor 8 acts_upstream_of_or_within ISO (PMID:19490914) MGI PMID:19490914 NCBI chrNW_004955442:16,236,286...16,241,093
Ensembl chrNW_004955442:16,236,232...16,241,152 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:19490914) MGI PMID:19490914 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chrNW_004955486:2,923,239...2,975,835 JBrowse link
photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl3 ARF like GTPase 3 involved_in ISO (PMID:16565502) UniProt PMID:16565502 NCBI chrNW_004955485:7,739,556...7,772,582
Ensembl chrNW_004955485:7,733,211...7,775,687 		JBrowse link
G Fam151b family with sequence similarity 151 member B involved_in ISO (PMID:31949211) UniProt PMID:31949211 NCBI chrNW_004955418:29,328,292...29,349,940
Ensembl chrNW_004955418:29,325,203...29,347,148 		JBrowse link
G Rp1 RP1 axonemal microtubule associated involved_in ISO (PMID:16126734) UniProt PMID:16126734 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Rp1l1 RP1 like 1 involved_in ISO (PMID:19657028) UniProt PMID:19657028 NCBI chrNW_004955403:52,180,612...52,200,569 JBrowse link
photoreceptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO (PMID:18032602) MGI PMID:18032602 NCBI chrNW_004955422:18,825,756...18,843,820
Ensembl chrNW_004955422:18,825,756...18,844,036 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO (PMID:16249514) MGI PMID:16249514 NCBI chrNW_004955422:18,023,639...18,028,845
Ensembl chrNW_004955422:18,023,639...18,028,845 		JBrowse link
G Cdhr1 cadherin related family member 1 involved_in ISO (PMID:23044944) UniProt PMID:23044944 NCBI chrNW_004955510:3,709,206...3,727,448
Ensembl chrNW_004955510:3,708,723...3,728,926 		JBrowse link
G Cfap418 cilia and flagella associated protein 418 involved_in ISO (PMID:29440555) UniProt PMID:29440555 NCBI chrNW_004955417:11,357,367...11,381,287
Ensembl chrNW_004955417:11,357,367...11,380,941 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within ISO (PMID:10097103) MGI PMID:10097103 NCBI chrNW_004955404:343,009...353,683
Ensembl chrNW_004955404:343,009...353,683 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO (PMID:27008858) ARUK-UCL PMID:27008858 NCBI chrNW_004955452:17,430,850...17,443,830
Ensembl chrNW_004955452:17,430,219...17,443,830 		JBrowse link
G Rabl2b RAB, member of RAS oncogene family like 2B involved_in ISO (PMID:28625565) UniProt PMID:28625565 NCBI chrNW_004955413:33,738,999...33,756,374 JBrowse link
photoreceptor cell outer segment organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:20081859)
(PMID:20592197)		 UniProt
MGI		 PMID:20081859 PMID:20592197 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO (PMID:23178122) MGI PMID:23178122 NCBI chrNW_004955450:4,624,634...4,668,470
Ensembl chrNW_004955450:4,631,266...4,662,719 		JBrowse link
G Cdhr1 cadherin related family member 1 involved_in ISO (PMID:23044944) UniProt PMID:23044944 NCBI chrNW_004955510:3,709,206...3,727,448
Ensembl chrNW_004955510:3,708,723...3,728,926 		JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 acts_upstream_of_or_within ISO (PMID:23178122) MGI PMID:23178122 NCBI chrNW_004955433:15,467,042...15,556,471 JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:12915475) MGI PMID:12915475 NCBI chrNW_004955406:33,817,754...34,005,937
Ensembl chrNW_004955406:33,817,605...34,005,943 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:24619649) MGI PMID:24619649 NCBI chrNW_004955442:15,625,429...15,719,006
Ensembl chrNW_004955442:15,630,501...15,718,484 		JBrowse link
G Ift20 intraflagellar transport 20 acts_upstream_of_or_within ISO (PMID:21307337) MGI PMID:21307337 NCBI chrNW_004955481:4,799,548...4,807,751
Ensembl chrNW_004955481:4,799,548...4,807,751 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO (PMID:27008858) ARUK-UCL PMID:27008858 NCBI chrNW_004955452:17,430,850...17,443,830
Ensembl chrNW_004955452:17,430,219...17,443,830 		JBrowse link
G Nphp1 nephrocystin 1 involved_in ISO (PMID:20081859) UniProt PMID:20081859 NCBI chrNW_004955470:3,261,455...3,305,989
Ensembl chrNW_004955470:3,260,557...3,307,797 		JBrowse link
G Nphp4 nephrocystin 4 acts_upstream_of_or_within ISO (PMID:21078623) MGI PMID:21078623 NCBI chrNW_004955486:6,442,058...6,547,451
Ensembl chrNW_004955486:6,448,442...6,547,488 		JBrowse link
G Pcare photoreceptor cilium actin regulator acts_upstream_of_or_within ISO (PMID:25616964) MGI PMID:25616964 NCBI chrNW_004955469:10,919,776...10,930,392
Ensembl chrNW_004955469:10,921,124...10,928,862 		JBrowse link
G Prph2 peripherin 2 acts_upstream_of_or_within ISO (PMID:28053051) MGI PMID:28053051 NCBI chrNW_004955437:8,784,211...8,794,789
Ensembl chrNW_004955437:8,782,183...8,795,017 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (PMID:28053051) MGI PMID:28053051 NCBI chrNW_004955599:578,165...580,055
Ensembl chrNW_004955599:573,426...579,812 		JBrowse link
G Rp1 RP1 axonemal microtubule associated involved_in ISO (PMID:14507858) UniProt PMID:14507858 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Tmem67 transmembrane protein 67 ISO RGD PMID:23516626 RGD:11535084 NCBI chrNW_004955417:10,097,488...10,137,959
Ensembl chrNW_004955417:10,097,472...10,138,644 		JBrowse link
positive regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crx cone-rod homeobox ISO RGD PMID:16799048 RGD:1600973 NCBI chrNW_004955574:1,544,917...1,548,912
Ensembl chrNW_004955574:1,544,917...1,548,912 		JBrowse link
G Shh sonic hedgehog signaling molecule ISO RGD PMID:9236238 RGD:2306313 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO (PMID:16249514) MGI PMID:16249514 NCBI chrNW_004955422:18,023,639...18,028,845
Ensembl chrNW_004955422:18,023,639...18,028,845 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955470:4,884,054...4,907,151
Ensembl chrNW_004955470:4,884,309...4,906,902 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (PMID:23001562) UniProt PMID:23001562 NCBI chrNW_004955419:4,604,883...4,626,675
Ensembl chrNW_004955419:4,607,507...4,626,608 		JBrowse link
G Dio3 iodothyronine deiodinase 3 acts_upstream_of_or_within ISO (PMID:20203194) MGI PMID:20203194 NCBI chrNW_004955538:1,042,949...1,045,038 JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:17065522), (PMID:21052544) MGI PMID:17065522 PMID:21052544 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968 		JBrowse link
G Hcn1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955446:17,146,915...17,457,843
Ensembl chrNW_004955446:17,151,311...17,457,888 		JBrowse link
G Pde6c phosphodiesterase 6C acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955507:129,678...179,586
Ensembl chrNW_004955507:129,678...179,305 		JBrowse link
G Rorb RAR related orphan receptor B involved_in ISO (PMID:16574740) UniProt PMID:16574740 NCBI chrNW_004955512:4,362,287...4,541,432
Ensembl chrNW_004955512:4,362,287...4,541,445 		JBrowse link
G Rp1 RP1 axonemal microtubule associated involved_in ISO (PMID:14507858) UniProt PMID:14507858 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Thrb thyroid hormone receptor beta acts_upstream_of ISO (PMID:20203194) MGI PMID:20203194 NCBI chrNW_004955430:15,992,146...16,322,696
Ensembl chrNW_004955430:15,992,146...16,323,238 		JBrowse link
G Thy1 Thy-1 cell surface antigen involved_in ISO (PMID:10567740) UniProt PMID:10567740 NCBI chrNW_004955412:20,480,284...20,484,958
Ensembl chrNW_004955412:20,480,284...20,484,958 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) MGI PMID:36125046 NCBI chrNW_004955405:15,571,458...15,574,568
Ensembl chrNW_004955405:15,571,073...15,574,791 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of ISO (PMID:16452096) MGI PMID:16452096 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259 		JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202 		JBrowse link
G Alms1 ALMS1 centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:16000322) MGI PMID:16000322 NCBI chrNW_004955424:12,130,496...12,258,684
Ensembl chrNW_004955424:12,130,607...12,258,522 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO (PMID:15173597) MGI PMID:15173597 NCBI chrNW_004955450:4,624,634...4,668,470
Ensembl chrNW_004955450:4,631,266...4,662,719 		JBrowse link
G Bhlhe23 basic helix-loop-helix family member e23 acts_upstream_of_or_within ISO (PMID:17255172) MGI PMID:17255172 NCBI chrNW_004955528:1,094,234...1,094,674 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO (PMID:17712420) MGI PMID:17712420 NCBI chrNW_004955451:16,445,338...16,449,243
Ensembl chrNW_004955451:16,445,338...16,450,062 		JBrowse link
G Nrl neural retina leucine zipper acts_upstream_of_or_within ISO (PMID:11694879) MGI PMID:11694879 NCBI chrNW_004955409:36,279,996...36,313,824
Ensembl chrNW_004955409:36,310,932...36,313,893 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within ISO (PMID:10516311) MGI PMID:10516311 NCBI chrNW_004955432:2,284,283...2,629,631
Ensembl chrNW_004955432:2,288,898...2,630,878 		JBrowse link
G Rorb RAR related orphan receptor B involved_in ISO (PMID:16574740), (PMID:19805139) UniProt PMID:16574740 PMID:19805139 NCBI chrNW_004955512:4,362,287...4,541,432
Ensembl chrNW_004955512:4,362,287...4,541,445 		JBrowse link
G Rp1 RP1 axonemal microtubule associated involved_in ISO (PMID:14507858) UniProt PMID:14507858 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Samd11 sterile alpha motif domain containing 11 involved_in ISO (PMID:33603070) UniProt PMID:33603070 NCBI chrNW_004955486:9,763,704...9,781,132
Ensembl chrNW_004955486:9,763,725...9,779,197 		JBrowse link
G Samd7 sterile alpha motif domain containing 7 involved_in ISO (PMID:33603070) UniProt PMID:33603070 NCBI chrNW_004955420:161,353...178,768
Ensembl chrNW_004955420:161,353...177,936 		JBrowse link
G Trpm1 transient receptor potential cation channel subfamily M member 1 acts_upstream_of_or_within ISO (PMID:19966281) MGI PMID:19966281 NCBI chrNW_004955416:29,846,374...29,880,922
Ensembl chrNW_004955416:29,814,077...29,939,344 		JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) MGI PMID:36125046 NCBI chrNW_004955405:15,571,458...15,574,568
Ensembl chrNW_004955405:15,571,073...15,574,791 		JBrowse link
G Cntf ciliary neurotrophic factor acts_upstream_of ISO (PMID:15207851) MGI PMID:15207851 NCBI chrNW_004955511:3,527,552...3,531,275
Ensembl chrNW_004955511:3,527,552...3,534,348 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (PMID:9071226) MGI PMID:9071226 NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846 		JBrowse link
G Ptn pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chrNW_004955494:5,580,264...5,681,848
Ensembl chrNW_004955494:5,580,422...5,684,190 		JBrowse link
G Rorb RAR related orphan receptor B acts_upstream_of_or_within ISO (PMID:25296752) MGI PMID:25296752 NCBI chrNW_004955512:4,362,287...4,541,432
Ensembl chrNW_004955512:4,362,287...4,541,445 		JBrowse link
G Sox8 SRY-box transcription factor 8 acts_upstream_of
acts_upstream_of_or_within		 ISO (PMID:19490914) MGI PMID:19490914 NCBI chrNW_004955442:16,236,286...16,241,093
Ensembl chrNW_004955442:16,236,232...16,241,152 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of
acts_upstream_of_or_within		 ISO (PMID:19490914) MGI PMID:19490914 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 acts_upstream_of_or_within ISO (PMID:15207851) MGI PMID:15207851 NCBI chrNW_004955451:16,320,326...16,348,505
Ensembl chrNW_004955451:16,319,904...16,357,687 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chrNW_004955486:2,923,239...2,975,835 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12619
    cellular process 12054
      cellular developmental process 3975
        cell differentiation 3974
          neuron differentiation 1530
            photoreceptor cell differentiation 78
              eye photoreceptor cell differentiation + 55
              negative regulation of photoreceptor cell differentiation + 7
              ocellus photoreceptor cell differentiation + 0
              photoreceptor cell development + 56
              photoreceptor cell fate commitment + 3
              positive regulation of photoreceptor cell differentiation + 2
              regulation of photoreceptor cell differentiation + 9
Path 2
Term Annotations click to browse term
  biological_process 12619
    developmental process 5987
      anatomical structure development 5659
        multicellular organism development 4625
          system development 4029
            nervous system development 2510
              neurogenesis 1861
                generation of neurons 1605
                  neuron differentiation 1530
                    photoreceptor cell differentiation 78
                      eye photoreceptor cell differentiation + 55
                      negative regulation of photoreceptor cell differentiation + 7
                      ocellus photoreceptor cell differentiation + 0
                      photoreceptor cell development + 56
                      photoreceptor cell fate commitment + 3
                      positive regulation of photoreceptor cell differentiation + 2
                      regulation of photoreceptor cell differentiation + 9
paths to the root