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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor cell differentiation
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Accession:GO:0046530 term browser browse the term
Definition:The specialization of organization of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light. An example of this process is found in Drosophila melanogaster.
Synonyms:alt_id: GO:0007467


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camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prom1 prominin 1 ISO (PMID:18654668)
(MGI:3838023|PMID:19228982)
BHF-UCL
UniProt
PMID:18654668, PMID:19228982 MGI:3838023 NCBI chrNW_004955480:7,955,501...8,059,537
Ensembl chrNW_004955480:7,961,389...8,059,589
JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:4437581|PMID:20300562) MGI PMID:20300562 MGI:4437581 NCBI chrNW_004955599:578,165...580,055
Ensembl chrNW_004955599:573,426...579,812
JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 ISO (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chrNW_004955553:353,190...614,806
Ensembl chrNW_004955553:357,112...614,811
JBrowse link
G Slc4a7 solute carrier family 4 member 7 ISO (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chrNW_004955430:18,991,615...19,059,590
Ensembl chrNW_004955430:18,991,301...19,067,754
JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 ISO (MGI:5014119|PMID:21646512) MGI PMID:21646512 MGI:5014119 NCBI chrNW_004955438:11,410,196...11,466,044
Ensembl chrNW_004955438:11,409,982...11,466,523
JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747
JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202
JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:2675211|PMID:12915475)
(MGI:4849309|PMID:21052544)
MGI PMID:12915475, PMID:21052544 MGI:2675211, MGI:4849309 NCBI chrNW_004955406:33,817,754...34,005,937
Ensembl chrNW_004955406:33,817,605...34,005,943
JBrowse link
G Fscn2 fascin actin-bundling protein 2, retinal ISO (MGI:3610644|PMID:16043865) MGI PMID:16043865 MGI:3610644 NCBI chrNW_004955506:1,526,830...1,533,775
Ensembl chrNW_004955506:1,526,830...1,533,775
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603
JBrowse link
G Gngt1 G protein subunit gamma transducin 1 ISO (MGI:3778702|PMID:18367617) MGI PMID:18367617 MGI:3778702 NCBI chrNW_004955432:10,653,508...10,657,811
Ensembl chrNW_004955432:10,643,674...10,658,933
JBrowse link
G Mfrp membrane frizzled-related protein ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004955412:20,421,935...20,426,760
Ensembl chrNW_004955412:20,421,935...20,426,760
JBrowse link
G Nr2e3 nuclear receptor subfamily 2 group E member 3 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004955450:5,281,707...5,286,260
Ensembl chrNW_004955450:5,281,707...5,286,260
JBrowse link
G Olfm3 olfactomedin 3 ISO RGD PMID:12019210 RGD:633402 NCBI chrNW_004955435:6,464,283...6,655,695
Ensembl chrNW_004955435:6,462,903...6,655,801
JBrowse link
G Pax6 paired box 6 ISO (MGI:2654287|PMID:12648492) MGI PMID:12648492 MGI:2654287 NCBI chrNW_004955476:10,058,979...10,074,668
Ensembl chrNW_004955476:10,058,961...10,074,162
JBrowse link
G Pdgfb platelet derived growth factor subunit B ISO (MGI:5607451|PMID:25224828) MGI PMID:25224828 MGI:5607451 NCBI chrNW_004955413:25,150,702...25,166,987
Ensembl chrNW_004955413:25,148,062...25,166,987
JBrowse link
G Prdm1 PR/SET domain 1 ISO (MGI:4454584|PMID:20463215) MGI PMID:20463215 MGI:4454584 NCBI chrNW_004955411:31,434,503...31,455,995
Ensembl chrNW_004955411:31,434,503...31,456,056
JBrowse link
G Prkci protein kinase C iota ISO (MGI:3607414|PMID:16267237) MGI PMID:16267237 MGI:3607414 NCBI chrNW_004955420:423,406...486,676
Ensembl chrNW_004955420:423,140...489,592
JBrowse link
G Rdh13 retinol dehydrogenase 13 ISO (MGI:5462166|PMID:22605914) MGI PMID:22605914 MGI:5462166 NCBI chrNW_004955567:1,091,636...1,108,648
Ensembl chrNW_004955567:1,091,636...1,108,732
JBrowse link
G Rorb RAR related orphan receptor B ISO (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chrNW_004955512:4,362,287...4,541,432
Ensembl chrNW_004955512:4,362,287...4,541,445
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO (MGI:2654998|PMID:12651948) MGI PMID:12651948 MGI:2654998 NCBI chrNW_004955601:398,772...453,271 JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (MGI:2654998|PMID:12651948) MGI PMID:12651948 MGI:2654998 NCBI chrNW_004955550:2,015,319...2,073,627
Ensembl chrNW_004955550:2,021,838...2,073,498
JBrowse link
G Th tyrosine hydroxylase ISO (MGI:3617102|PMID:16445854) BHF-UCL PMID:16445854 MGI:3617102 NCBI chrNW_004955422:13,943,590...13,951,102
Ensembl chrNW_004955422:13,943,552...13,951,137
JBrowse link
G Tulp1 TUB like protein 1 ISO (MGI:4397555|PMID:19218615) UniProt PMID:19218615 MGI:4397555 NCBI chrNW_004955437:3,405,218...3,417,079 JBrowse link
G Vegfa vascular endothelial growth factor A ISO (MGI:3607459|PMID:16251428) MGI PMID:16251428 MGI:3607459 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004955501:2,648,017...2,751,999
Ensembl chrNW_004955501:2,648,017...2,752,057
JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO (MGI:3045481|PMID:15207851) MGI PMID:15207851 MGI:3045481 NCBI chrNW_004955451:16,320,326...16,348,505
Ensembl chrNW_004955451:16,319,904...16,357,687
JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 ISO (MGI:2680889|PMID:14625556) MGI PMID:14625556 MGI:2680889 NCBI chrNW_004955466:10,755,143...10,764,957
Ensembl chrNW_004955466:10,755,012...10,765,095
JBrowse link
negative regulation of eye photoreceptor cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dio3 iodothyronine deiodinase 3 ISO (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chrNW_004955538:1,042,949...1,045,038 JBrowse link
G Thrb thyroid hormone receptor beta ISO (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chrNW_004955430:15,992,146...16,322,696
Ensembl chrNW_004955430:15,992,146...16,323,238
JBrowse link
negative regulation of photoreceptor cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cntf ciliary neurotrophic factor ISO (MGI:3045481|PMID:15207851) MGI PMID:15207851 MGI:3045481 NCBI chrNW_004955511:3,527,552...3,531,275
Ensembl chrNW_004955511:3,527,552...3,534,348
JBrowse link
G Dlx1 distal-less homeobox 1 ISO (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chrNW_004955449:2,920,705...2,924,667
Ensembl chrNW_004955449:2,920,478...2,924,667
JBrowse link
G Dlx2 distal-less homeobox 2 ISO (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chrNW_004955449:2,907,502...2,909,893
Ensembl chrNW_004955449:2,907,436...2,910,816
JBrowse link
G Notch1 notch receptor 1 ISO (MGI:3617079|PMID:16452096) MGI PMID:16452096 MGI:3617079 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259
JBrowse link
G Sox8 SRY-box transcription factor 8 ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chrNW_004955442:16,236,286...16,241,093
Ensembl chrNW_004955442:16,236,232...16,241,152
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563
JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chrNW_004955486:2,923,239...2,975,835 JBrowse link
photoreceptor cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl3 ADP ribosylation factor like GTPase 3 ISO (MGI:3620864|PMID:16565502) UniProt PMID:16565502 MGI:3620864 NCBI chrNW_004955485:7,739,556...7,772,582
Ensembl chrNW_004955485:7,733,211...7,775,687
JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:3604930|PMID:16126734) UniProt PMID:16126734 MGI:3604930 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Rp1l1 RP1 like 1 ISO (MGI:4353917|PMID:19657028) UniProt PMID:19657028 MGI:4353917 NCBI chrNW_004955403:52,180,612...52,200,569 JBrowse link
photoreceptor cell morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs1 Bardet-Biedl syndrome 1 ISO (MGI:3767384|PMID:18032602) MGI PMID:18032602 MGI:3767384 NCBI chrNW_004955422:18,825,756...18,843,820 JBrowse link
G Cabp4 calcium binding protein 4 ISO (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chrNW_004955422:18,023,639...18,028,845
Ensembl chrNW_004955422:18,023,639...18,028,845
JBrowse link
G Cdhr1 cadherin related family member 1 ISO (PMID:23044944) UniProtKB PMID:23044944 NCBI chrNW_004955510:3,709,206...3,727,448
Ensembl chrNW_004955510:3,708,723...3,728,926
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 ISO (MGI:1334014|PMID:10097103) MGI PMID:10097103 MGI:1334014 NCBI chrNW_004955404:343,009...353,683
Ensembl chrNW_004955404:343,009...353,683
JBrowse link
G LOC102004385 chromosome unknown open reading frame, human C8orf37 ISO (MGI:6148650|PMID:29440555) UniProt PMID:29440555 MGI:6148650 NCBI chrNW_004955417:11,357,367...11,381,287
Ensembl chrNW_004955417:11,357,367...11,380,941
JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A ISO (MGI:5789479|PMID:27008858) ARUK-UCL PMID:27008858 MGI:5789479 NCBI chrNW_004955452:17,430,850...17,443,830
Ensembl chrNW_004955452:17,430,219...17,443,830
JBrowse link
G Rabl2b RAB, member of RAS oncogene family like 2B ISO (MGI:6094395|PMID:28625565) UniProt PMID:28625565 MGI:6094395 NCBI chrNW_004955413:33,738,999...33,756,374 JBrowse link
photoreceptor cell outer segment organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:4461813|PMID:20592197)
(MGI:4437526|PMID:20081859)
MGI
UniProt
PMID:20081859, PMID:20592197 MGI:4437526, MGI:4461813 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO (MGI:5467890|PMID:23178122) MGI PMID:23178122 MGI:5467890 NCBI chrNW_004955450:4,624,634...4,668,470
Ensembl chrNW_004955450:4,631,266...4,662,719
JBrowse link
G Cdhr1 cadherin related family member 1 ISO (PMID:23044944) UniProtKB PMID:23044944 NCBI chrNW_004955510:3,709,206...3,727,448
Ensembl chrNW_004955510:3,708,723...3,728,926
JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO (MGI:5467890|PMID:23178122) MGI PMID:23178122 MGI:5467890 NCBI chrNW_004955433:15,467,042...15,556,471 JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:2675211|PMID:12915475) MGI PMID:12915475 MGI:2675211 NCBI chrNW_004955406:33,817,754...34,005,937
Ensembl chrNW_004955406:33,817,605...34,005,943
JBrowse link
G Ift140 intraflagellar transport 140 ISO (MGI:5604762|PMID:24619649) MGI PMID:24619649 MGI:5604762 NCBI chrNW_004955442:15,625,429...15,719,006
Ensembl chrNW_004955442:15,630,501...15,718,484
JBrowse link
G Ift20 intraflagellar transport 20 ISO (MGI:5317282|PMID:21307337) MGI PMID:21307337 MGI:5317282 NCBI chrNW_004955481:4,799,548...4,807,751
Ensembl chrNW_004955481:4,799,548...4,807,751
JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A ISO (MGI:5789479|PMID:27008858) ARUK-UCL PMID:27008858 MGI:5789479 NCBI chrNW_004955452:17,430,850...17,443,830
Ensembl chrNW_004955452:17,430,219...17,443,830
JBrowse link
G Nphp1 nephrocystin 1 ISO (MGI:4437526|PMID:20081859) UniProt PMID:20081859 MGI:4437526 NCBI chrNW_004955470:3,261,455...3,305,989
Ensembl chrNW_004955470:3,260,557...3,307,797
JBrowse link
G Nphp4 nephrocystin 4 ISO (MGI:4867588|PMID:21078623) MGI PMID:21078623 MGI:4867588 NCBI chrNW_004955486:6,442,058...6,547,451
Ensembl chrNW_004955486:6,448,442...6,547,488
JBrowse link
G Pcare photoreceptor cilium actin regulator ISO (MGI:5636574|PMID:25616964) MGI PMID:25616964 MGI:5636574 NCBI chrNW_004955469:10,919,776...10,930,392
Ensembl chrNW_004955469:10,921,124...10,928,862
JBrowse link
G Prph2 peripherin 2 ISO (MGI:5905515|PMID:28053051) MGI PMID:28053051 MGI:5905515 NCBI chrNW_004955437:8,784,211...8,794,789
Ensembl chrNW_004955437:8,782,183...8,795,017
JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:5905515|PMID:28053051) MGI PMID:28053051 MGI:5905515 NCBI chrNW_004955599:578,165...580,055
Ensembl chrNW_004955599:573,426...579,812
JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Tmem67 transmembrane protein 67 ISO RGD PMID:23516626 RGD:11535084 NCBI chrNW_004955417:10,097,488...10,137,959
Ensembl chrNW_004955417:10,097,472...10,138,644
JBrowse link
positive regulation of photoreceptor cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crx cone-rod homeobox ISO RGD PMID:16799048 RGD:1600973 NCBI chrNW_004955574:1,544,917...1,548,912
Ensembl chrNW_004955574:1,544,917...1,548,912
JBrowse link
G Shh sonic hedgehog signaling molecule ISO RGD PMID:9236238 RGD:2306313 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
retinal cone cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202
JBrowse link
G Cabp4 calcium binding protein 4 ISO (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chrNW_004955422:18,023,639...18,028,845
Ensembl chrNW_004955422:18,023,639...18,028,845
JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004955470:4,884,054...4,907,151
Ensembl chrNW_004955470:4,884,309...4,906,902
JBrowse link
G Dio3 iodothyronine deiodinase 3 ISO (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chrNW_004955538:1,042,949...1,045,038 JBrowse link
G Gnat2 G protein subunit alpha transducin 2 ISO (MGI:3714271|PMID:17065522), (MGI:4849309|PMID:21052544) MGI PMID:17065522, PMID:21052544 MGI:3714271, MGI:4849309 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968
JBrowse link
G Hcn1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004955446:17,146,915...17,457,843
Ensembl chrNW_004955446:17,151,311...17,457,888
JBrowse link
G Pde6c phosphodiesterase 6C ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004955507:129,678...179,586
Ensembl chrNW_004955507:129,678...179,305
JBrowse link
G Rorb RAR related orphan receptor B ISO (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chrNW_004955512:4,362,287...4,541,432
Ensembl chrNW_004955512:4,362,287...4,541,445
JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Thrb thyroid hormone receptor beta ISO (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chrNW_004955430:15,992,146...16,322,696
Ensembl chrNW_004955430:15,992,146...16,323,238
JBrowse link
G Thy1 Thy-1 cell surface antigen ISO (MGI:1349255|PMID:10567740) UniProt PMID:10567740 MGI:1349255 NCBI chrNW_004955412:20,480,284...20,484,958
Ensembl chrNW_004955412:20,480,284...20,484,958
JBrowse link
retinal rod cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202
JBrowse link
G Alms1 ALMS1 centrosome and basal body associated protein ISO (MGI:3588454|PMID:16000322) MGI PMID:16000322 MGI:3588454 NCBI chrNW_004955424:12,130,496...12,258,684
Ensembl chrNW_004955424:12,130,607...12,258,522
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO (MGI:3044824|PMID:15173597) MGI PMID:15173597 MGI:3044824 NCBI chrNW_004955450:4,624,634...4,668,470
Ensembl chrNW_004955450:4,631,266...4,662,719
JBrowse link
G Bhlhe23 basic helix-loop-helix family member e23 ISO (MGI:3814679|PMID:17255172) MGI PMID:17255172 MGI:3814679 NCBI chrNW_004955528:1,094,234...1,094,674 JBrowse link
G Ccdc66 coiled-coil domain containing 66 ISO (MGI:5141557|PMID:21680557) MGI PMID:21680557 MGI:5141557 NCBI chrNW_004955430:6,402,622...6,440,154
Ensembl chrNW_004955430:6,402,701...6,439,985
JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase ISO (MGI:3769195|PMID:17712420) MGI PMID:17712420 MGI:3769195 NCBI chrNW_004955451:16,445,338...16,449,243
Ensembl chrNW_004955451:16,445,338...16,450,062
JBrowse link
G Nrl neural retina leucine zipper ISO (MGI:2385798|PMID:11694879) MGI PMID:11694879 MGI:2385798 NCBI chrNW_004955409:36,279,996...36,313,824
Ensembl chrNW_004955409:36,310,932...36,313,893
JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 ISO (MGI:3039190|PMID:10516311) MGI PMID:10516311 MGI:3039190 NCBI chrNW_004955432:2,284,283...2,629,631
Ensembl chrNW_004955432:2,288,898...2,630,878
JBrowse link
G Rorb RAR related orphan receptor B ISO (MGI:3652638|PMID:16574740), (MGI:4366105|PMID:19805139) UniProt PMID:16574740, PMID:19805139 MGI:3652638, MGI:4366105 NCBI chrNW_004955512:4,362,287...4,541,432
Ensembl chrNW_004955512:4,362,287...4,541,445
JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Trpm1 transient receptor potential cation channel subfamily M member 1 ISO (MGI:4420740|PMID:19966281) MGI PMID:19966281 MGI:4420740 NCBI chrNW_004955416:29,846,374...29,880,922
Ensembl chrNW_004955416:29,814,077...29,939,344
JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptn pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chrNW_004955494:5,580,264...5,681,848
Ensembl chrNW_004955494:5,580,422...5,684,190
JBrowse link
G Sox8 SRY-box transcription factor 8 ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chrNW_004955442:16,236,286...16,241,093
Ensembl chrNW_004955442:16,236,232...16,241,152
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563
JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chrNW_004955486:2,923,239...2,975,835 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11892
    cellular process 11098
      cellular developmental process 3640
        cell differentiation 3579
          neuron differentiation 1403
            photoreceptor cell differentiation 71
              eye photoreceptor cell differentiation + 49
              negative regulation of photoreceptor cell differentiation + 7
              ocellus photoreceptor cell differentiation + 0
              photoreceptor cell development + 53
              photoreceptor cell fate commitment + 3
              positive regulation of photoreceptor cell differentiation + 2
              regulation of photoreceptor cell differentiation + 11
Path 2
Term Annotations click to browse term
  biological_process 11892
    developmental process 5616
      anatomical structure development 5254
        multicellular organism development 4812
          system development 4532
            nervous system development 2347
              neurogenesis 1687
                generation of neurons 1551
                  neuron differentiation 1403
                    photoreceptor cell differentiation 71
                      eye photoreceptor cell differentiation + 49
                      negative regulation of photoreceptor cell differentiation + 7
                      ocellus photoreceptor cell differentiation + 0
                      photoreceptor cell development + 53
                      photoreceptor cell fate commitment + 3
                      positive regulation of photoreceptor cell differentiation + 2
                      regulation of photoreceptor cell differentiation + 11
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.