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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor cell differentiation
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Accession:GO:0046530 term browser browse the term
Definition:The specialization of organization of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light. An example of this process is found in Drosophila melanogaster.
Synonyms:alt_id: GO:0007467


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photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CFH complement factor H ISO (MGI:5796739|PMID:26149919), (MGI:6304909|PMID:30705315) MGI PMID:26149919, PMID:30705315 MGI:5796739, MGI:6304909 NCBI chr 1:172,155,882...172,251,632
Ensembl chr 1:176,455,247...176,525,521
JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PROM1 prominin 1 ISO (PMID:18654668)
(MGI:3838023|PMID:19228982)
BHF-UCL
UniProt
PMID:18654668, PMID:19228982 MGI:3838023 NCBI chr 4:10,405,299...10,519,518
Ensembl chr 4:15,702,159...15,815,454
JBrowse link
G ROM1 retinal outer segment membrane protein 1 ISO (MGI:4437581|PMID:20300562) MGI PMID:20300562 MGI:4437581 NCBI chr11:57,970,290...57,972,658
Ensembl chr11:61,324,900...61,327,278
JBrowse link
G SDK2 sidekick cell adhesion molecule 2 ISO (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chr17:67,261,847...67,577,568
Ensembl chr17:72,823,709...73,133,952
JBrowse link
G SLC4A7 solute carrier family 4 member 7 ISO (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chr 3:27,261,155...27,373,223
Ensembl chr 3:27,591,639...27,670,815
JBrowse link
G TTC8 tetratricopeptide repeat domain 8 ISO (MGI:5014119|PMID:21646512) MGI PMID:21646512 MGI:5014119 NCBI chr14:69,446,355...69,502,351
Ensembl chr14:88,802,812...88,857,055
JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506
JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232
JBrowse link
G CRB1 crumbs cell polarity complex component 1 ISO (MGI:2675211|PMID:12915475)
(MGI:4849309|PMID:21052544)
MGI PMID:12915475, PMID:21052544 MGI:2675211, MGI:4849309 NCBI chr 1:172,794,523...173,076,045
Ensembl chr 1:177,174,431...177,422,867
JBrowse link
G FSCN2 fascin actin-bundling protein 2, retinal ISO (MGI:3610644|PMID:16043865) MGI PMID:16043865 MGI:3610644 NCBI chr17:75,974,971...75,993,275
Ensembl chr17:81,687,051...81,694,823
JBrowse link
G GABRR2 gamma-aminobutyric acid type A receptor subunit rho2 NOT ISO (MGI:2179933|PMID:12019334) MGI PMID:12019334 MGI:2179933 NCBI chr 6:87,123,527...87,185,547
Ensembl chr 6:90,401,811...90,459,468
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 ISO (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568
JBrowse link
G GNGT1 G protein subunit gamma transducin 1 ISO (MGI:3778702|PMID:18367617) MGI PMID:18367617 MGI:3778702 NCBI chr 7:85,839,639...85,859,844
Ensembl chr 7:99,446,623...99,451,185
JBrowse link
G MFRP membrane frizzled-related protein ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr11:114,179,998...114,187,716
Ensembl chr11:118,107,317...118,115,050
JBrowse link
G NR2E3 nuclear receptor subfamily 2 group E member 3 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr15:50,759,707...50,767,703
Ensembl chr15:69,525,351...69,533,034
JBrowse link
G OLFM3 olfactomedin 3 ISO RGD PMID:12019210 RGD:633402 NCBI chr 1:104,451,488...104,651,208
Ensembl chr 1:103,168,819...103,364,306
JBrowse link
G PAX6 paired box 6 ISO (MGI:2654287|PMID:12648492) MGI PMID:12648492 MGI:2654287 NCBI chr11:31,753,190...31,782,225 JBrowse link
G PDGFB platelet derived growth factor subunit B ISO (MGI:5607451|PMID:25224828) MGI PMID:25224828 MGI:5607451 NCBI chr22:20,127,223...20,148,407
Ensembl chr22:37,944,018...37,964,883
JBrowse link
G PRDM1 PR/SET domain 1 ISO (MGI:4454584|PMID:20463215) MGI PMID:20463215 MGI:4454584 NCBI chr 6:103,899,410...103,923,389
Ensembl chr 6:107,773,229...107,796,815
JBrowse link
G PRKCI protein kinase C iota ISO (MGI:3607414|PMID:16267237) MGI PMID:16267237 MGI:3607414 NCBI chr 3:167,237,093...167,320,522
Ensembl chr 3:175,426,774...175,510,072
JBrowse link
G RDH13 retinol dehydrogenase 13 ISO (MGI:5462166|PMID:22605914) MGI PMID:22605914 MGI:5462166 NCBI chr19:52,081,674...52,107,781
Ensembl chr19:60,776,114...60,794,267
JBrowse link
G RORB RAR related orphan receptor B ISO (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chr 9:50,144,836...50,340,910
Ensembl chr 9:73,469,767...73,543,030
JBrowse link
G RPGR retinitis pigmentosa GTPase regulator ISO (MGI:2654998|PMID:12651948) MGI PMID:12651948 MGI:2654998 NCBI chr  X:30,718,669...30,777,671 JBrowse link
G RPGRIP1 RPGR interacting protein 1 ISO (MGI:2654998|PMID:12651948) MGI PMID:12651948 MGI:2654998 NCBI chr14:2,105,703...2,169,362
Ensembl chr14:20,185,236...20,247,064
JBrowse link
G TH tyrosine hydroxylase ISO (MGI:3617102|PMID:16445854) BHF-UCL PMID:16445854 MGI:3617102 NCBI chr11:2,204,820...2,212,750
Ensembl chr11:2,231,248...2,242,433
JBrowse link
G TULP1 TUB like protein 1 ISO (MGI:4397555|PMID:19218615) UniProt PMID:19218615 MGI:4397555 NCBI chr 6:35,058,422...35,073,472
Ensembl chr 6:36,151,747...36,166,160
JBrowse link
G VEGFA vascular endothelial growth factor A ISO (MGI:3607459|PMID:16251428) MGI PMID:16251428 MGI:3607459 NCBI chr 6:43,361,053...43,377,366
Ensembl chr 6:44,650,365...44,666,353
JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr 3:133,017,166...133,202,163
Ensembl chr 3:140,485,925...140,666,592
JBrowse link
G STAT3 signal transducer and activator of transcription 3 ISO (MGI:3045481|PMID:15207851) MGI PMID:15207851 MGI:3045481 NCBI chr17:14,928,689...15,003,644
Ensembl chr17:15,152,358...15,227,067
JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTX2 orthodenticle homeobox 2 ISO (MGI:2680889|PMID:14625556) MGI PMID:14625556 MGI:2680889 NCBI chr14:37,370,926...37,381,610
Ensembl chr14:55,641,349...55,651,012
JBrowse link
negative regulation of eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DIO3 iodothyronine deiodinase 3 ISO (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chr14:82,188,126...82,190,220 JBrowse link
G THRB thyroid hormone receptor beta ISO (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chr 3:24,024,025...24,401,024 JBrowse link
negative regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNTF ciliary neurotrophic factor ISO (MGI:3045481|PMID:15207851) MGI PMID:15207851 MGI:3045481 NCBI chr11:53,876,081...53,882,870
Ensembl chr11:57,336,792...57,341,121
JBrowse link
G DLX1 distal-less homeobox 1 ISO (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chr2B:59,382,156...59,387,100
Ensembl chr2B:176,839,721...176,843,909
JBrowse link
G DLX2 distal-less homeobox 2 ISO (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chr2B:59,396,841...59,400,297
Ensembl chr2B:176,853,913...176,857,079
JBrowse link
G NOTCH1 notch receptor 1 ISO (MGI:3617079|PMID:16452096) MGI PMID:16452096 MGI:3617079 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740
JBrowse link
G SOX8 SRY-box transcription factor 8 ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088
G SOX9 SRY-box transcription factor 9 ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chr17:66,028,737...66,034,122 JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 1:9,396,936...9,557,100
Ensembl chr 1:10,622,519...10,677,091
JBrowse link
photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL3 ADP ribosylation factor like GTPase 3 ISO (MGI:3620864|PMID:16565502) UniProt PMID:16565502 MGI:3620864 NCBI chr10:99,271,620...99,312,784
Ensembl chr10:102,735,325...102,775,849
JBrowse link
G RP1 RP1 axonemal microtubule associated ISO (MGI:3604930|PMID:16126734) UniProt PMID:16126734 MGI:3604930 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879
JBrowse link
G RP1L1 RP1 like 1 ISO (MGI:4353917|PMID:19657028) UniProt PMID:19657028 MGI:4353917 NCBI chr 8:8,586,410...8,605,275 JBrowse link
photoreceptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS1 Bardet-Biedl syndrome 1 ISO (MGI:3767384|PMID:18032602) MGI PMID:18032602 MGI:3767384 NCBI chr11:61,868,257...61,892,473 JBrowse link
G C8H8orf37 chromosome 8 C8orf37 homolog ISO (MGI:6148650|PMID:29440555) UniProt PMID:29440555 MGI:6148650 NCBI chr 8:91,862,207...91,887,127
Ensembl chr 8:94,062,122...94,086,565
JBrowse link
G CABP4 calcium binding protein 4 ISO (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chr11:62,813,477...62,820,425
Ensembl chr11:66,121,992...66,128,758
JBrowse link
G CDHR1 cadherin related family member 1 ISO (PMID:23044944) UniProtKB PMID:23044944 NCBI chr10:80,610,079...80,632,084
Ensembl chr10:84,179,704...84,204,747
JBrowse link
G GRK1 G protein-coupled receptor kinase 1 ISO (MGI:1334014|PMID:10097103) MGI PMID:10097103 MGI:1334014 NCBI chr13:94,816,045...94,838,509
Ensembl chr13:113,867,002...113,885,610
JBrowse link
G MFSD2A major facilitator superfamily domain containing 2A ISO (MGI:5789479|PMID:27008858) ARUK-UCL PMID:27008858 MGI:5789479 NCBI chr 1:39,244,438...39,259,156
Ensembl chr 1:40,569,706...40,584,438
JBrowse link
G RABL2B RAB, member of RAS oncogene family like 2B ISO (MGI:6094395|PMID:28625565) UniProt PMID:28625565 MGI:6094395 NCBI chr22:31,007,409...31,023,281 JBrowse link
photoreceptor cell outer segment organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859)
(MGI:4461813|PMID:20592197)
UniProt
MGI
PMID:20081859, PMID:20592197 MGI:4437526, MGI:4461813 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232
JBrowse link
G BBS4 Bardet-Biedl syndrome 4 ISO (MGI:5467890|PMID:23178122) MGI PMID:23178122 MGI:5467890 NCBI chr15:51,601,526...51,656,460
Ensembl chr15:70,362,261...70,416,964
JBrowse link
G CDHR1 cadherin related family member 1 ISO (PMID:23044944) UniProtKB PMID:23044944 NCBI chr10:80,610,079...80,632,084
Ensembl chr10:84,179,704...84,204,747
JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 ISO (MGI:5467890|PMID:23178122) MGI PMID:23178122 MGI:5467890 NCBI chr16:38,160,056...38,249,474
Ensembl chr16:57,292,093...57,375,460
JBrowse link
G CRB1 crumbs cell polarity complex component 1 ISO (MGI:2675211|PMID:12915475) MGI PMID:12915475 MGI:2675211 NCBI chr 1:172,794,523...173,076,045
Ensembl chr 1:177,174,431...177,422,867
JBrowse link
G IFT140 intraflagellar transport 140 ISO (MGI:5604762|PMID:24619649) MGI PMID:24619649 MGI:5604762 NCBI chr16:130,150...232,369
Ensembl chr16:1,566,824...1,658,884
JBrowse link
G IFT20 intraflagellar transport 20 ISO (MGI:5317282|PMID:21307337) MGI PMID:21307337 MGI:5317282 NCBI chr17:28,438,960...28,446,113
Ensembl chr17:28,941,303...28,948,129
JBrowse link
G MFSD2A major facilitator superfamily domain containing 2A ISO (MGI:5789479|PMID:27008858) ARUK-UCL PMID:27008858 MGI:5789479 NCBI chr 1:39,244,438...39,259,156
Ensembl chr 1:40,569,706...40,584,438
JBrowse link
G NPHP1 nephrocystin 1 ISO (MGI:4437526|PMID:20081859) UniProt PMID:20081859 MGI:4437526 NCBI chr2A:91,520,612...91,602,187
Ensembl chr2A:111,625,267...111,706,205
JBrowse link
G NPHP4 nephrocystin 4 ISO (MGI:4867588|PMID:21078623) MGI PMID:21078623 MGI:4867588 NCBI chr 1:4,620,593...4,756,363
Ensembl chr 1:5,878,739...6,012,864
JBrowse link
G PCARE photoreceptor cilium actin regulator ISO (MGI:5636574|PMID:25616964) MGI PMID:25616964 MGI:5636574 NCBI chr2A:29,069,651...29,082,796
Ensembl chr2A:29,147,730...29,160,296
JBrowse link
G PRPH2 peripherin 2 ISO (MGI:5905515|PMID:28053051) MGI PMID:28053051 MGI:5905515 NCBI chr 6:42,284,818...42,316,150
Ensembl chr 6:43,582,317...43,608,011
JBrowse link
G ROM1 retinal outer segment membrane protein 1 ISO (MGI:5905515|PMID:28053051) MGI PMID:28053051 MGI:5905515 NCBI chr11:57,970,290...57,972,658
Ensembl chr11:61,324,900...61,327,278
JBrowse link
G RP1 RP1 axonemal microtubule associated ISO (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879
JBrowse link
G TMEM67 transmembrane protein 67 ISO RGD PMID:23516626 RGD:11535084 NCBI chr 8:90,378,623...90,442,904
Ensembl chr 8:92,324,402...92,387,437
JBrowse link
positive regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRX cone-rod homeobox ISO RGD PMID:16799048 RGD:1600973 NCBI chr19:44,828,119...44,856,284 JBrowse link
G SHH sonic hedgehog signaling molecule ISO RGD PMID:9236238 RGD:2306313 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232
JBrowse link
G CABP4 calcium binding protein 4 ISO (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chr11:62,813,477...62,820,425
Ensembl chr11:66,121,992...66,128,758
JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr2A:100,911,053...100,962,278
Ensembl chr2A:99,259,808...99,308,517
JBrowse link
G DIO3 iodothyronine deiodinase 3 ISO (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chr14:82,188,126...82,190,220 JBrowse link
G GNAT2 G protein subunit alpha transducin 2 ISO (MGI:3714271|PMID:17065522), (MGI:4849309|PMID:21052544) MGI PMID:17065522, PMID:21052544 MGI:3714271, MGI:4849309 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808
JBrowse link
G HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 5:64,673,392...65,116,259
Ensembl chr 5:69,724,767...70,158,761
JBrowse link
G PDE6C phosphodiesterase 6C ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr10:90,361,003...90,414,169
Ensembl chr10:93,871,704...93,924,654
JBrowse link
G RORB RAR related orphan receptor B ISO (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chr 9:50,144,836...50,340,910
Ensembl chr 9:73,469,767...73,543,030
JBrowse link
G RP1 RP1 axonemal microtubule associated ISO (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879
JBrowse link
G THRB thyroid hormone receptor beta ISO (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chr 3:24,024,025...24,401,024 JBrowse link
G THY1 Thy-1 cell surface antigen ISO (MGI:1349255|PMID:10567740) UniProt PMID:10567740 MGI:1349255 NCBI chr11:114,253,535...114,259,495
Ensembl chr11:118,180,717...118,186,901
JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232
JBrowse link
G ALMS1 ALMS1 centrosome and basal body associated protein ISO (MGI:3588454|PMID:16000322) MGI PMID:16000322 MGI:3588454 NCBI chr2A:73,438,657...73,671,313
Ensembl chr2A:74,926,650...75,152,139
JBrowse link
G BBS4 Bardet-Biedl syndrome 4 ISO (MGI:3044824|PMID:15173597) MGI PMID:15173597 MGI:3044824 NCBI chr15:51,601,526...51,656,460
Ensembl chr15:70,362,261...70,416,964
JBrowse link
G BHLHE23 basic helix-loop-helix family member e23 ISO (MGI:3814679|PMID:17255172) MGI PMID:17255172 MGI:3814679 NCBI chr20:59,385,608...59,392,078 JBrowse link
G CCDC66 coiled-coil domain containing 66 ISO (MGI:5141557|PMID:21680557) MGI PMID:21680557 MGI:5141557 NCBI chr 3:56,504,388...56,557,617
Ensembl chr 3:57,720,490...57,773,326
JBrowse link
G CFH complement factor H ISO (MGI:3760334|PMID:17921253) MGI PMID:17921253 MGI:3760334 NCBI chr 1:172,155,882...172,251,632
Ensembl chr 1:176,455,247...176,525,521
JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase ISO (MGI:3769195|PMID:17712420) MGI PMID:17712420 MGI:3769195 NCBI chr17:14,772,054...14,780,398
Ensembl chr17:14,996,420...15,004,242
JBrowse link
G NRL neural retina leucine zipper ISO (MGI:2385798|PMID:11694879) MGI PMID:11694879 MGI:2385798 NCBI chr14:4,858,105...4,891,207
Ensembl chr14:22,982,367...22,998,187
JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 ISO (MGI:3039190|PMID:10516311) MGI PMID:10516311 MGI:3039190 NCBI chr 9:39,663,986...40,208,770
Ensembl chr 9:84,021,837...84,372,678
JBrowse link
G RORB RAR related orphan receptor B ISO (MGI:3652638|PMID:16574740), (MGI:4366105|PMID:19805139) UniProt PMID:16574740, PMID:19805139 MGI:3652638, MGI:4366105 NCBI chr 9:50,144,836...50,340,910
Ensembl chr 9:73,469,767...73,543,030
JBrowse link
G RP1 RP1 axonemal microtubule associated ISO (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879
JBrowse link
G TRPM1 transient receptor potential cation channel subfamily M member 1 ISO (MGI:4420740|PMID:19966281) MGI PMID:19966281 MGI:4420740 NCBI chr15:9,492,500...9,653,644
Ensembl chr15:28,530,878...28,690,947
JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTN pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chr 7:129,184,786...129,300,815
Ensembl chr 7:141,701,430...141,705,623
JBrowse link
G SOX8 SRY-box transcription factor 8 ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088
G SOX9 SRY-box transcription factor 9 ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chr17:66,028,737...66,034,122 JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 1:9,396,936...9,557,100
Ensembl chr 1:10,622,519...10,677,091
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12566
    cellular process 11671
      cellular developmental process 3766
        cell differentiation 3701
          neuron differentiation 1429
            photoreceptor cell differentiation 73
              eye photoreceptor cell differentiation + 51
              negative regulation of photoreceptor cell differentiation + 7
              ocellus photoreceptor cell differentiation + 0
              photoreceptor cell development + 55
              photoreceptor cell fate commitment + 3
              positive regulation of photoreceptor cell differentiation + 2
              regulation of photoreceptor cell differentiation + 11
Path 2
Term Annotations click to browse term
  biological_process 12566
    developmental process 5839
      anatomical structure development 5452
        multicellular organism development 4984
          system development 4688
            nervous system development 2406
              neurogenesis 1723
                generation of neurons 1578
                  neuron differentiation 1429
                    photoreceptor cell differentiation 73
                      eye photoreceptor cell differentiation + 51
                      negative regulation of photoreceptor cell differentiation + 7
                      ocellus photoreceptor cell differentiation + 0
                      photoreceptor cell development + 55
                      photoreceptor cell fate commitment + 3
                      positive regulation of photoreceptor cell differentiation + 2
                      regulation of photoreceptor cell differentiation + 11
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.