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ONTOLOGY REPORT - ANNOTATIONS

Term:ceramide biosynthetic process
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Accession:GO:0046513 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of ceramides, any N-acylated sphingoid.
Synonyms:exact_synonym: ceramide anabolism;   ceramide biosynthesis;   ceramide formation;   ceramide synthesis


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ceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agk acylglycerol kinase involved_in
acts_upstream_of_or_within		 IBA
IDA		 (MGI:6201960|PMID:21873635)
(MGI:3054595|PMID:15252046)		 GO_Central
MGI		 PMID:15252046 PMID:21873635 MGI:3054595 MGI:6201960 NCBI chr 6:40,302,010...40,378,723
Ensembl chr 6:40,302,106...40,373,696 		JBrowse link
G Alox12b arachidonate 12-lipoxygenase, 12R type involved_in IMP (MGI:3789553|PMID:17403930) UniProt PMID:17403930 MGI:3789553 NCBI chr11:69,047,898...69,060,617
Ensembl chr11:69,047,815...69,060,618 		JBrowse link
G Aloxe3 arachidonate lipoxygenase 3 involved_in IMP (MGI:5488571|PMID:22832496) UniProt PMID:22832496 MGI:5488571 NCBI chr11:69,016,243...69,039,941
Ensembl chr11:69,016,722...69,039,941 		JBrowse link
G Asah1 N-acylsphingosine amidohydrolase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:41,793,683...41,850,681
Ensembl chr 8:41,793,234...41,827,810 		JBrowse link
G Asah2 N-acylsphingosine amidohydrolase 2 involved_in IMP
ISO		 (MGI:6274955|PMID:21613224) UniProt
MGI		 PMID:21613224 GO_REF:0000096 MGI:4417868 MGI:6274955 NCBI chr19:31,962,046...32,080,540
Ensembl chr19:31,959,997...32,085,611 		JBrowse link
G Cers1 ceramide synthase 1 involved_in IBA
IMP
ISO
IDA		 (MGI:6201960|PMID:21873635)
(MGI:5008665|PMID:21625621), (MGI:6380950|PMID:30605666)
(MGI:3696321|PMID:16951403), (MGI:3764760|PMID:17977534), (MGI:5755322|PMID:26620563)		 GO_Central
UniProt
MGI		 PMID:16951403 PMID:17977534 PMID:21625621 PMID:21873635 PMID:26620563 More... GO_REF:0000096 MGI:3696321 MGI:3764760 MGI:4834177 MGI:5008665 MGI:5755322 MGI:6201960 MGI:6380950 NCBI chr 8:70,768,425...70,784,238
Ensembl chr 8:70,768,425...70,784,242 		JBrowse link
G Cers2 ceramide synthase 2 involved_in
acts_upstream_of_or_within		 IBA
IMP
IDA
ISO		 (MGI:6201960|PMID:21873635)
(MGI:4421488|PMID:19801672)
(MGI:5755322|PMID:26620563)
(MGI:3696894|PMID:15823095)		 GO_Central
UniProt
MGI		 PMID:15823095 PMID:19801672 PMID:21873635 PMID:26620563 GO_REF:0000096 MGI:3696894 MGI:4421488 MGI:4834177 MGI:5755322 MGI:6201960 NCBI chr 3:95,222,077...95,230,910
Ensembl chr 3:95,222,102...95,230,910 		JBrowse link
G Cers3 ceramide synthase 3 involved_in IBA
IDA
ISO		 (MGI:6201960|PMID:21873635)
(MGI:5303015|PMID:22038835)		 GO_Central
UniProt
MGI		 PMID:21873635 PMID:22038835 GO_REF:0000096 MGI:4834177 MGI:5303015 MGI:6201960 NCBI chr 7:66,382,864...66,473,440
Ensembl chr 7:66,393,252...66,473,439 		JBrowse link
G Cers4 ceramide synthase 4 involved_in
acts_upstream_of_or_within		 ISO
IBA
IDA		 (MGI:6201960|PMID:21873635)
(MGI:2679796|PMID:12912983), (MGI:3696894|PMID:15823095)		 MGI
GO_Central		 PMID:12912983 PMID:15823095 PMID:21873635 GO_REF:0000096 MGI:2679796 MGI:3696894 MGI:4834177 MGI:6201960 NCBI chr 8:4,542,863...4,579,603
Ensembl chr 8:4,543,026...4,581,680 		JBrowse link
G Cers5 ceramide synthase 5 involved_in IBA
ISO
IDA		 (MGI:6201960|PMID:21873635)
(MGI:3696624|PMID:16100120), (MGI:3722529|PMID:17609214), (MGI:3764760|PMID:17977534)		 GO_Central
MGI
UniProt		 PMID:16100120 PMID:17609214 PMID:17977534 PMID:21873635 GO_REF:0000096 MGI:3696624 MGI:3722529 MGI:3764760 MGI:4834177 MGI:6201960 NCBI chr15:99,633,473...99,670,396
Ensembl chr15:99,632,762...99,670,766 		JBrowse link
G Cers6 ceramide synthase 6 acts_upstream_of_or_within
involved_in		 IDA
IMP
ISO
IBA		 (MGI:3696894|PMID:15823095)
(MGI:5513027|PMID:23760501)
(MGI:6201960|PMID:21873635)
(MGI:5755322|PMID:26620563)		 MGI
UniProt
GO_Central		 PMID:15823095 PMID:21873635 PMID:23760501 PMID:26620563 GO_REF:0000096 MGI:3696894 MGI:4834177 MGI:5513027 MGI:5755322 MGI:6201960 NCBI chr 2:68,691,489...68,944,628
Ensembl chr 2:68,691,785...68,944,626 		JBrowse link
G Cyp4f39 cytochrome P450, family 4, subfamily f, polypeptide 39 involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr17:32,671,670...32,712,294
Ensembl chr17:32,671,697...32,712,294 		JBrowse link
G Degs1 delta 4-desaturase, sphingolipid 1 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (MGI:5466789|PMID:22984457)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:21873635 PMID:22984457 MGI:5466789 MGI:6201960 NCBI chr 1:182,103,529...182,110,366
Ensembl chr 1:182,103,337...182,110,369 		JBrowse link
G Degs1l delta 4-desaturase, sphingolipid 1 like involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 1:180,863,171...180,888,326
Ensembl chr 1:180,878,802...180,888,232 		JBrowse link
G Degs2 delta 4-desaturase, sphingolipid 2 involved_in
acts_upstream_of_or_within		 IBA
IDA		 (MGI:6201960|PMID:21873635)
(MGI:3694278|PMID:16571104)		 GO_Central
MGI		 PMID:16571104 PMID:21873635 MGI:3694278 MGI:6201960 NCBI chr12:108,653,051...108,668,561
Ensembl chr12:108,644,970...108,668,570 		JBrowse link
G Elovl1 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1 involved_in IMP (MGI:5532629|PMID:23689133) UniProt PMID:23689133 MGI:5532629 NCBI chr 4:118,284,044...118,290,150
Ensembl chr 4:118,285,290...118,290,150 		JBrowse link
G Fa2h fatty acid 2-hydroxylase involved_in IMP
ISO		 (MGI:6245295|PMID:22517924) UniProt
MGI		 PMID:22517924 GO_REF:0000096 MGI:4834177 MGI:6245295 NCBI chr 8:112,071,770...112,120,453
Ensembl chr 8:112,071,767...112,120,456 		JBrowse link
G Gba glucosidase, beta, acid involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:89,110,223...89,116,180
Ensembl chr 3:89,110,235...89,116,273 		JBrowse link
G Gm6993 predicted gene 6993 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr12:31,290,769...31,290,978
Ensembl chr12:31,290,769...31,290,978 		JBrowse link
G P2rx1 purinergic receptor P2X, ligand-gated ion channel, 1 acts_upstream_of_or_within IDA (MGI:3640029|PMID:16325464) MGI PMID:16325464 MGI:3640029 NCBI chr11:72,889,882...72,906,026
Ensembl chr11:72,889,929...72,906,026 		JBrowse link
G P2rx7 purinergic receptor P2X, ligand-gated ion channel, 7 acts_upstream_of_or_within IDA (MGI:3640029|PMID:16325464) MGI PMID:16325464 MGI:3640029 NCBI chr 5:122,781,990...122,830,399
Ensembl chr 5:122,781,974...122,829,495 		JBrowse link
G Pnpla1 patatin-like phospholipase domain containing 1 involved_in IMP
ISO		 (MGI:5882269|PMID:27751867) UniProt
MGI		 PMID:27751867 GO_REF:0000096 MGI:4834177 MGI:5882269 NCBI chr17:29,077,262...29,109,282
Ensembl chr17:29,077,385...29,109,283 		JBrowse link
G Samd8 sterile alpha motif domain containing 8 involved_in
acts_upstream_of_or_within		 ISO
IBA
IMP
IDA		 (MGI:6201960|PMID:21873635)
(MGI:5707904|PMID:25667419)
(MGI:5632043|PMID:25605874), (MGI:5707904|PMID:25667419)		 MGI
GO_Central		 PMID:21873635 PMID:25605874 PMID:25667419 GO_REF:0000096 MGI:4834177 MGI:5632043 MGI:5707904 MGI:6201960 NCBI chr14:21,800,599...21,848,794
Ensembl chr14:21,800,599...21,848,794 		JBrowse link
G Sgms1 sphingomyelin synthase 1 acts_upstream_of_or_within
involved_in		 ISO
IBA
IMP		 (MGI:5632043|PMID:25605874)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:21873635 PMID:25605874 MGI:5632043 MGI:6201960 NCBI chr19:32,100,127...32,367,285
Ensembl chr19:32,100,127...32,367,114 		JBrowse link
G Sgms2 sphingomyelin synthase 2 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (MGI:5632043|PMID:25605874)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:21873635 PMID:25605874 MGI:5632043 MGI:6201960 NCBI chr 3:131,112,634...131,197,204
Ensembl chr 3:131,112,634...131,197,172 		JBrowse link
G Smpd1 sphingomyelin phosphodiesterase 1, acid lysosomal involved_in ISO
IDA
IMP
IBA		 (MGI:7327228|PMID:35705808)
(MGI:82530|PMID:8706124)
(MGI:6201960|PMID:21873635)		 MGI
UniProt
RGD
GO_Central		 PMID:8706124 PMID:17261082 PMID:21873635 PMID:35705808 GO_REF:0000096 MGI:4417868 MGI:4834177 MGI:6201960 MGI:7327228 MGI:82530 RGD:1601344 NCBI chr 7:105,203,567...105,207,596
Ensembl chr 7:105,203,567...105,207,596 		JBrowse link
G Smpd2 sphingomyelin phosphodiesterase 2, neutral involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI
RGD		 PMID:12473648 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 RGD:1581395 NCBI chr10:41,363,168...41,366,410
Ensembl chr10:41,361,638...41,366,365 		JBrowse link
G Smpd4 sphingomyelin phosphodiesterase 4 involved_in IBA
ISO
IDA		 (MGI:6201960|PMID:21873635)
(MGI:6450503|PMID:25180167)		 GO_Central
MGI
UniProt		 PMID:21873635 PMID:25180167 GO_REF:0000096 MGI:4834177 MGI:6201960 MGI:6450503 NCBI chr16:17,437,218...17,462,694
Ensembl chr16:17,437,218...17,462,692 		JBrowse link
G Smpd5 sphingomyelin phosphodiesterase 5 involved_in IDA (MGI:6450238|PMID:21183079) UniProt PMID:21183079 MGI:6450238 NCBI chr15:76,178,478...76,181,096
Ensembl chr15:76,178,548...76,181,096 		JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 acts_upstream_of_or_within
involved_in		 ISO
IMP
IBA		 (MGI:5638294|PMID:25691431)
(MGI:3814228|PMID:16216550)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:16216550 PMID:21873635 PMID:25691431 MGI:3814228 MGI:5638294 MGI:6201960 NCBI chr13:53,486,784...53,531,453
Ensembl chr13:53,486,784...53,531,433 		JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 acts_upstream_of_or_within
involved_in		 IMP
IBA
ISO		 (MGI:3814228|PMID:16216550)
(MGI:6201960|PMID:21873635)
(MGI:5638294|PMID:25691431)		 MGI
GO_Central		 PMID:16216550 PMID:21873635 PMID:25691431 MGI:3814228 MGI:5638294 MGI:6201960 NCBI chr12:87,351,832...87,435,129
Ensembl chr12:87,351,832...87,435,129 		JBrowse link
G Sptlc3 serine palmitoyltransferase, long chain base subunit 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:139,335,833...139,478,981
Ensembl chr 2:139,335,833...139,479,594 		JBrowse link
G Sptssa serine palmitoyltransferase, small subunit A involved_in
acts_upstream_of_or_within		 IBA
ISO		 (MGI:6201960|PMID:21873635)
(MGI:5638294|PMID:25691431)		 GO_Central
MGI		 PMID:21873635 PMID:25691431 MGI:5638294 MGI:6201960 NCBI chr12:54,692,159...54,703,357
Ensembl chr12:54,692,177...54,703,358 		JBrowse link
G Sptssb serine palmitoyltransferase, small subunit B involved_in
acts_upstream_of_or_within		 IBA
IMP		 (MGI:6201960|PMID:21873635)
(MGI:5689923|PMID:26438849)		 GO_Central
MGI		 PMID:21873635 PMID:26438849 MGI:5689923 MGI:6201960 NCBI chr 3:69,726,871...69,768,697
Ensembl chr 3:69,726,875...69,767,273 		JBrowse link
G Tlcd3b TLC domain containing 3B involved_in
acts_upstream_of_or_within		 IBA
IDA		 (MGI:6201960|PMID:21873635)
(MGI:5490837|PMID:23275342)		 GO_Central
MGI		 PMID:21873635 PMID:23275342 MGI:5490837 MGI:6201960 NCBI chr 7:126,413,213...126,429,391
Ensembl chr 7:126,396,840...126,429,391 		JBrowse link
galactosylceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3galt1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:67,395,528...67,953,226
Ensembl chr 2:67,396,215...67,953,033 		JBrowse link
G B3galt2 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:143,516,435...143,525,675
Ensembl chr 1:143,516,402...143,530,352 		JBrowse link
G B4galt3 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3 involved_in ISO
IBA		 (MGI:6201960|PMID:21873635) MGI
GO_Central		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 1:171,097,898...171,104,468
Ensembl chr 1:171,097,898...171,104,469 		JBrowse link
G Fa2h fatty acid 2-hydroxylase involved_in IMP
ISO
IDA		 (MGI:3826747|PMID:18815260)
(MGI:3696647|PMID:15658937)		 UniProt
MGI		 PMID:15658937 PMID:18815260 GO_REF:0000096 MGI:3696647 MGI:3826747 MGI:4417868 NCBI chr 8:112,071,770...112,120,453
Ensembl chr 8:112,071,767...112,120,456 		JBrowse link
G Gal3st1 galactose-3-O-sulfotransferase 1 involved_in
acts_upstream_of_or_within		 IBA
IDA		 (MGI:6201960|PMID:21873635)
(MGI:1355015|PMID:10727929)		 GO_Central
MGI		 PMID:10727929 PMID:21873635 MGI:1355015 MGI:6201960 NCBI chr11:3,933,636...3,949,328
Ensembl chr11:3,933,636...3,949,326 		JBrowse link
G Ugt8a UDP galactosyltransferase 8A involved_in ISO
IBA		 (MGI:6201960|PMID:21873635) MGI
GO_Central		 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 NCBI chr 3:125,655,071...125,732,301
Ensembl chr 3:125,658,920...125,732,268 		JBrowse link
ganglioside biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3galt4 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:34,168,886...34,170,462
Ensembl chr17:34,168,883...34,170,462 		JBrowse link
G B4galnt1 beta-1,4-N-acetyl-galactosaminyl transferase 1 acts_upstream_of_or_within
involved_in		 IMP
ISO
IBA
IGI		 (MGI:1331265|PMID:10021458)
(MGI:6201960|PMID:21873635)
(MGI:83232|PMID:8855236)		 MGI
GO_Central
UniProt		 PMID:8855236 PMID:10021458 PMID:21873635 GO_REF:0000096 MGI:1331265 MGI:4417868 MGI:4834177 MGI:6201960 MGI:83232 NCBI chr10:127,001,025...127,008,209
Ensembl chr10:127,001,094...127,008,199 		JBrowse link
G St6galnac1 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 acts_upstream_of_or_within TAS (MGI:2153262|PMID:10788794) MGI PMID:10788794 MGI:2153262 NCBI chr11:116,655,851...116,666,333
Ensembl chr11:116,655,851...116,666,333 		JBrowse link
G St6galnac3 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 3:152,903,911...153,430,846
Ensembl chr 3:152,903,903...153,430,811 		JBrowse link
G St6galnac4 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:32,477,090...32,489,708
Ensembl chr 2:32,477,107...32,489,710 		JBrowse link
G St6galnac5 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 3:152,525,522...152,687,847
Ensembl chr 3:152,522,718...152,687,883 		JBrowse link
G St6galnac6 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 acts_upstream_of_or_within
involved_in		 IDA
IBA		 (MGI:1354410|PMID:10702226)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:10702226 PMID:21873635 MGI:1354410 MGI:6201960 NCBI chr 2:32,489,721...32,510,821
Ensembl chr 2:32,489,721...32,510,818 		JBrowse link
G St8sia2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:73,588,867...73,663,475
Ensembl chr 7:73,588,867...73,663,438 		JBrowse link
G St8sia3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr18:64,387,430...64,409,217
Ensembl chr18:64,387,430...64,412,682 		JBrowse link
G St8sia4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:95,515,407...95,595,473
Ensembl chr 1:95,515,407...95,595,296 		JBrowse link
G St8sia6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 involved_in IDA (MGI:2182536|PMID:11980897) BHF-UCL PMID:11980897 MGI:2182536 NCBI chr 2:13,659,745...13,798,331
Ensembl chr 2:13,655,832...13,798,875 		JBrowse link
ganglioside biosynthetic process via lactosylceramide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 6430550D23Rik RIKEN cDNA 6430550D23 gene involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:155,831,465...155,849,957
Ensembl chr 2:155,815,199...155,849,897 		JBrowse link
G B4galt5 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5 involved_in IMP (MGI:6196231|PMID:30114188) UniProt PMID:30114188 MGI:6196231 NCBI chr 2:167,140,364...167,191,155
Ensembl chr 2:167,140,364...167,191,103 		JBrowse link
G B4galt6 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6 involved_in IMP (MGI:6196231|PMID:30114188) UniProt PMID:30114188 MGI:6196231 NCBI chr18:20,817,656...20,879,461
Ensembl chr18:20,817,656...20,879,461 		JBrowse link
G St3gal1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 involved_in IDA
IBA
ISO		 (MGI:65558|PMID:8144500)
(MGI:6201960|PMID:21873635)		 UniProt
GO_Central
MGI		 PMID:8144500 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 MGI:65558 NCBI chr15:66,974,724...67,048,795
Ensembl chr15:66,974,724...67,048,679 		JBrowse link
G St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 involved_in IDA
IBA
ISO
IMP		 (MGI:65558|PMID:8144500)
(MGI:6201960|PMID:21873635)
(MGI:6467685|PMID:22735313)		 UniProt
GO_Central
MGI		 PMID:8144500 PMID:21873635 PMID:22735313 GO_REF:0000096 MGI:4417868 MGI:4834177 MGI:6201960 MGI:6467685 MGI:65558 NCBI chr 8:111,646,474...111,699,129
Ensembl chr 8:111,646,554...111,699,112 		JBrowse link
G St3gal3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 involved_in IMP (MGI:6467685|PMID:22735313) UniProt PMID:22735313 MGI:6467685 NCBI chr 4:117,789,349...117,992,169
Ensembl chr 4:117,789,351...117,992,111 		JBrowse link
glucosylceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fa2h fatty acid 2-hydroxylase involved_in IMP (MGI:5285470|PMID:21628453) UniProt PMID:21628453 MGI:5285470 NCBI chr 8:112,071,770...112,120,453
Ensembl chr 8:112,071,767...112,120,456 		JBrowse link
G Ugcg UDP-glucose ceramide glucosyltransferase involved_in ISO
IMP
IBA		 (MGI:2180222|PMID:10430909), (MGI:3603060|PMID:16109770), (MGI:5448789|PMID:22851168), (MGI:5510915|PMID:23748427)
(MGI:6201960|PMID:21873635)		 MGI
UniProt
GO_Central		 PMID:10430909 PMID:16109770 PMID:21873635 PMID:22851168 PMID:23748427 GO_REF:0000096 MGI:2180222 MGI:3603060 MGI:4834177 MGI:5448789 MGI:5510915 MGI:6201960 NCBI chr 4:59,189,452...59,222,833
Ensembl chr 4:59,189,257...59,222,833 		JBrowse link
lactosylceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galt4 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:38,562,600...38,589,416
Ensembl chr16:38,562,626...38,589,411 		JBrowse link
G B4galt6 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr18:20,817,656...20,879,461
Ensembl chr18:20,817,656...20,879,461 		JBrowse link
negative regulation of ceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ormdl1 ORM1-like 1 (S. cerevisiae) acts_upstream_of_or_within ISO (MGI:5638294|PMID:25691431) MGI PMID:25691431 MGI:5638294 NCBI chr 1:53,336,254...53,349,404
Ensembl chr 1:53,336,254...53,349,468 		JBrowse link
G Ormdl2 ORM1-like 2 (S. cerevisiae) acts_upstream_of_or_within ISO (MGI:5638294|PMID:25691431) MGI PMID:25691431 MGI:5638294 NCBI chr10:128,653,771...128,657,498
Ensembl chr10:128,653,771...128,657,514 		JBrowse link
G Ormdl3 ORM1-like 3 (S. cerevisiae) acts_upstream_of_or_within ISO
IDA		 (MGI:5638294|PMID:25691431) MGI PMID:25691431 MGI:5638294 NCBI chr11:98,472,120...98,478,071
Ensembl chr11:98,472,082...98,478,194 		JBrowse link
G Sphk1 sphingosine kinase 1 involved_in IMP
ISO		 (MGI:6294167|PMID:16118219) UniProt
MGI		 PMID:16118219 GO_REF:0000096 MGI:4834177 MGI:6294167 NCBI chr11:116,421,662...116,427,502
Ensembl chr11:116,421,751...116,427,501 		JBrowse link
omega-hydroxyceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpla1 patatin-like phospholipase domain containing 1 involved_in IMP
ISO		 (MGI:5888934|PMID:28248300) UniProt
MGI		 PMID:28248300 GO_REF:0000096 MGI:4834177 MGI:5888934 NCBI chr17:29,077,262...29,109,282
Ensembl chr17:29,077,385...29,109,283 		JBrowse link
positive regulation of ceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccn1 cellular communication network factor 1 acts_upstream_of_or_within IDA (MGI:3849354|PMID:19364818) MGI PMID:19364818 MGI:3849354 NCBI chr 3:145,352,726...145,355,740
Ensembl chr 3:145,352,731...145,355,736 		JBrowse link
G Enpp7 ectonucleotide pyrophosphatase/phosphodiesterase 7 involved_in IMP (MGI:4947032|PMID:21177474) UniProt PMID:21177474 MGI:4947032 NCBI chr11:118,879,007...118,884,047
Ensembl chr11:118,879,014...118,884,047 		JBrowse link
G Pla2g6 phospholipase A2, group VI involved_in ISO
IBA		 (MGI:6201960|PMID:21873635) RGD
GO_Central
MGI		 PMID:18936091 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 RGD:6482750 NCBI chr15:79,170,428...79,212,915
Ensembl chr15:79,170,428...79,212,590 		JBrowse link
G Prkcd protein kinase C, delta involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:30,317,310...30,348,637
Ensembl chr14:30,317,311...30,348,167 		JBrowse link
G Sirt3 sirtuin 3 involved_in IDA (MGI:5755322|PMID:26620563) UniProt PMID:26620563 MGI:5755322 NCBI chr 7:140,443,576...140,462,222
Ensembl chr 7:140,443,579...140,462,222 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3, neutral involved_in ISO RGD
MGI		 PMID:20096352 GO_REF:0000096 MGI:4417868 RGD:10041064 NCBI chr 8:106,979,180...107,064,597
Ensembl chr 8:106,979,180...107,064,620 		JBrowse link
G Sphk2 sphingosine kinase 2 involved_in IDA
ISO		 (MGI:6294167|PMID:16118219) UniProt
MGI		 PMID:16118219 GO_REF:0000096 MGI:4834177 MGI:6294167 NCBI chr 7:45,358,887...45,367,426
Ensembl chr 7:45,358,891...45,367,426 		JBrowse link
regulation of ceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ormdl1 ORM1-like 1 (S. cerevisiae) acts_upstream_of IGI (MGI:6393026|PMID:31880535) MGI PMID:31880535 MGI:6393026 NCBI chr 1:53,336,254...53,349,404
Ensembl chr 1:53,336,254...53,349,468 		JBrowse link
G Ormdl3 ORM1-like 3 (S. cerevisiae) acts_upstream_of IGI
IMP		 (MGI:6393026|PMID:31880535) MGI PMID:31880535 MGI:6393026 NCBI chr11:98,472,120...98,478,071
Ensembl chr11:98,472,082...98,478,194 		JBrowse link
G Prkcd protein kinase C, delta involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:30,317,310...30,348,637
Ensembl chr14:30,317,311...30,348,167 		JBrowse link
G Samd8 sterile alpha motif domain containing 8 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:21,800,599...21,848,794
Ensembl chr14:21,800,599...21,848,794 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28454
    metabolic process 11392
      nitrogen compound metabolic process 9550
        amide metabolic process 1307
          ceramide metabolic process 102
            ceramide biosynthetic process 70
              ganglioside biosynthetic process + 17
              glycosylceramide biosynthetic process + 7
              isogloboside biosynthetic process 0
              lactosylceramide biosynthetic process 2
              negative regulation of ceramide biosynthetic process + 4
              omega-hydroxyceramide biosynthetic process 1
              positive regulation of ceramide biosynthetic process + 7
              regulation of ceramide biosynthetic process + 12
Path 2
Term Annotations click to browse term
  biological_process 28454
    metabolic process 11392
      primary metabolic process 10159
        lipid metabolic process 1499
          cellular lipid metabolic process 1070
            membrane lipid metabolic process 193
              sphingolipid metabolic process 147
                sphingolipid biosynthetic process 99
                  ceramide biosynthetic process 70
                    ganglioside biosynthetic process + 17
                    glycosylceramide biosynthetic process + 7
                    isogloboside biosynthetic process 0
                    lactosylceramide biosynthetic process 2
                    negative regulation of ceramide biosynthetic process + 4
                    omega-hydroxyceramide biosynthetic process 1
                    positive regulation of ceramide biosynthetic process + 7
                    regulation of ceramide biosynthetic process + 12
paths to the root