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ONTOLOGY REPORT - ANNOTATIONS


Term:phosphatidylcholine metabolic process
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Accession:GO:0046470 term browser browse the term
Definition:The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes.
Synonyms:exact_synonym: phosphatidylcholine metabolism



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phosphatidylcholine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA3 ATP binding cassette subfamily A member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:38,679,312...38,712,868
Ensembl chr 6:38,679,324...38,712,648
JBrowse link
G ABHD3 abhydrolase domain containing 3, phospholipase involved_in IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 7:66,331,687...66,383,443
Ensembl chr 7:66,332,410...66,382,942
JBrowse link
G APOA4 apolipoprotein A4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:16,751,588...16,754,215
Ensembl chr 5:16,751,799...16,754,837
JBrowse link
G LCAT lecithin-cholesterol acyltransferase involved_in ISO (PMID:26195816) UniProt PMID:26195816 NCBI chr 5:81,556,047...81,559,313 JBrowse link
G LIPC lipase C, hepatic type ISO RGD PMID:2223857 RGD:1600650 NCBI chr30:23,432,460...23,584,037
Ensembl chr30:23,432,493...23,584,037
JBrowse link
G MECP2 methyl-CpG binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17237885) Ensembl
MGI
PMID:17237885 GO_REF:0000107 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994
JBrowse link
G MECP2 methyl-CpG binding protein 2 involved_in IEA Ensembl GO_REF:0000107
G PLA2G10 phospholipase A2 group X involved_in IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 6:28,573,239...28,591,714
Ensembl chr 6:28,574,387...28,591,703
JBrowse link
G PLA2G15 phospholipase A2 group XV involved_in ISO
IEA
ISS
RGD
Ensembl
UniProt
PMID:11238016 GO_REF:0000024 GO_REF:0000107 RGD:1582127 NCBI chr 5:81,269,914...81,280,700
Ensembl chr 5:81,269,920...81,280,700
JBrowse link
G PLA2G1B phospholipase A2 group IB involved_in IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr26:16,248,417...16,257,163
Ensembl chr26:16,248,409...16,257,178
JBrowse link
G PLA2G2C phospholipase A2 group IIC involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:78,609,852...78,700,940 JBrowse link
G PLA2G2D phospholipase A2 group IID involved_in IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 2:78,739,826...78,745,839
Ensembl chr 2:78,739,769...78,745,920
JBrowse link
G PLA2G2E phospholipase A2 group IIE involved_in IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 2:78,834,820...78,838,058
Ensembl chr 2:78,831,309...78,841,821
JBrowse link
G PLA2G2F phospholipase A2 group IIF involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:78,714,251...78,724,257
Ensembl chr 2:78,716,228...78,723,984
JBrowse link
G PLA2G3 phospholipase A2 group III involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20424323) Ensembl
MGI
PMID:20424323 GO_REF:0000107 NCBI chr26:24,127,074...24,132,508
Ensembl chr26:24,128,005...24,132,508
JBrowse link
G PLA2G5 phospholipase A2 group V involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:78,762,851...78,781,642
Ensembl chr 2:78,762,852...78,781,983
JBrowse link
G PLAAT1 phospholipase A and acyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr34:24,751,404...24,770,690
Ensembl chr34:24,760,155...24,770,690
JBrowse link
G PNPLA6 patatin like phospholipase domain containing 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr20:52,327,547...52,349,006
Ensembl chr20:52,318,408...52,348,963
JBrowse link
G PON1 paraoxonase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:20,565,620...20,600,774
Ensembl chr14:20,565,641...20,642,985
JBrowse link
CDP-choline pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEPT1 choline/ethanolamine phosphotransferase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 6:40,838,584...40,869,606
Ensembl chr 6:40,839,219...40,869,582
JBrowse link
G CHKA choline kinase alpha involved_in IEA
IBA
GOC
GO_Central
GO_REF:0000033 GO_REF:0000108 NCBI chr18:49,717,512...49,784,653
Ensembl chr18:49,745,437...49,781,882
JBrowse link
G CHKB choline kinase beta involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:16,733,071...16,736,797
Ensembl chr10:16,733,095...16,736,758
JBrowse link
G CHPT1 choline phosphotransferase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr15:40,602,570...40,631,422 JBrowse link
G PCYT1A phosphate cytidylyltransferase 1A, choline involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr33:29,363,282...29,414,635
Ensembl chr33:29,358,452...29,430,424
JBrowse link
G PCYT1B phosphate cytidylyltransferase 1B, choline involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr  X:20,076,298...20,207,837
Ensembl chr  X:20,079,772...20,207,722
JBrowse link
negative regulation of phosphatidylcholine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LPCAT1 lysophosphatidylcholine acyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20018880) Ensembl
MGI
PMID:20018880 GO_REF:0000107 NCBI chr34:11,162,715...11,195,380
Ensembl chr34:11,164,615...11,193,681
JBrowse link
negative regulation of phosphatidylcholine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOC1 apolipoprotein C1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:110,520,177...110,522,563
Ensembl chr 1:110,520,198...110,631,412
JBrowse link
phosphatidylcholine acyl-chain remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBI diazepam binding inhibitor, acyl-CoA binding protein involved_in ISO (PMID:21079819) UniProt PMID:21079819 NCBI chr19:30,640,429...30,645,704
Ensembl chr19:30,640,429...30,646,405
JBrowse link
G LPCAT1 lysophosphatidylcholine acyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr34:11,162,715...11,195,380
Ensembl chr34:11,164,615...11,193,681
JBrowse link
G LPCAT2 lysophosphatidylcholine acyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:60,401,317...60,469,177
Ensembl chr 2:60,388,557...60,469,199
JBrowse link
G LPCAT3 lysophosphatidylcholine acyltransferase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:38,028,438...38,068,854
Ensembl chr27:38,028,120...38,068,502
JBrowse link
G LPCAT4 lysophosphatidylcholine acyltransferase 4 involved_in ISO (PMID:18458083)
(PMID:18156367)
UniProt PMID:18156367 PMID:18458083 NCBI chr30:746,053...754,691
Ensembl chr30:743,407...754,409
JBrowse link
G MBOAT2 membrane bound O-acyltransferase domain containing 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:6,090,746...6,217,139
Ensembl chr17:6,094,900...6,213,142
JBrowse link
G MBOAT7 membrane bound O-acyltransferase domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:103,028,000...103,040,299
Ensembl chr 1:103,028,002...103,040,167
JBrowse link
G NR1H2 nuclear receptor subfamily 1 group H member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:106,332,691...106,339,168
Ensembl chr 1:106,332,798...106,339,135
JBrowse link
G NR1H3 nuclear receptor subfamily 1 group H member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:42,333,173...42,346,152
Ensembl chr18:42,333,202...42,341,236
JBrowse link
G PLA2G2F phospholipase A2 group IIF involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:78,714,251...78,724,257
Ensembl chr 2:78,716,228...78,723,984
JBrowse link
G PLA2G4A phospholipase A2 group IVA involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:19,804,412...19,955,215
Ensembl chr 7:19,832,664...19,966,936
JBrowse link
G PLA2G4B phospholipase A2 group IVB involved_in ISO (PMID:10358058), (PMID:16617059) UniProt PMID:10358058 PMID:16617059 NCBI chr30:8,865,941...8,878,687
Ensembl chr30:8,859,257...8,876,395
JBrowse link
phosphatidylcholine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOA1 apolipoprotein A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:16,740,071...16,742,081
Ensembl chr 5:16,740,130...16,741,943
JBrowse link
G APOA2 apolipoprotein A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr38:21,263,641...21,265,887
Ensembl chr38:21,262,789...21,265,887
JBrowse link
G CEPT1 choline/ethanolamine phosphotransferase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:20018880) MGI
Ensembl
PMID:20018880 GO_REF:0000107 NCBI chr 6:40,838,584...40,869,606
Ensembl chr 6:40,839,219...40,869,582
JBrowse link
G CHKA choline kinase alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16371353) Ensembl
MGI
PMID:16371353 GO_REF:0000107 NCBI chr18:49,717,512...49,784,653
Ensembl chr18:49,745,437...49,781,882
JBrowse link
G CHPT1 choline phosphotransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20018880) Ensembl
MGI
PMID:20018880 GO_REF:0000107 NCBI chr15:40,602,570...40,631,422 JBrowse link
G DHRS7B dehydrogenase/reductase 7B acts_upstream_of_or_within ISO (PMID:28930673) MGI PMID:28930673 NCBI chr 5:42,603,027...42,666,446
Ensembl chr 5:42,603,078...42,665,673
JBrowse link
G FGF7 fibroblast growth factor 7 ISO surfactant disaturated phosphatidylcholine (DSPC) synthesis RGD PMID:11316745 RGD:68696 NCBI chr30:15,555,016...15,608,230
Ensembl chr30:15,555,266...15,606,521
JBrowse link
G GPAT4 glycerol-3-phosphate acyltransferase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:23,990,142...24,022,822
Ensembl chr16:23,911,972...24,010,152
JBrowse link
G LCAT lecithin-cholesterol acyltransferase involved_in ISO (PMID:12354767)
(PMID:11966470)
UniProt
BHF-UCL
PMID:11966470 PMID:12354767 NCBI chr 5:81,556,047...81,559,313 JBrowse link
G LOC102155424 fatty acid-binding protein 5 acts_upstream_of_or_within ISO (PMID:15164767) MGI PMID:15164767 NCBI chr  X:35,086,820...35,087,968 JBrowse link
G LPCAT1 lysophosphatidylcholine acyltransferase 1 involved_in
acts_upstream_of
IEA
ISO
(PMID:20018880) Ensembl
MGI
PMID:20018880 GO_REF:0000107 NCBI chr34:11,162,715...11,195,380
Ensembl chr34:11,164,615...11,193,681
JBrowse link
G LPCAT3 lysophosphatidylcholine acyltransferase 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr27:38,028,438...38,068,854
Ensembl chr27:38,028,120...38,068,502
JBrowse link
G PCYT1A phosphate cytidylyltransferase 1A, choline acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:11829742)
(PMID:15798219)
RGD
MGI
UniProt
Ensembl
PMID:11829742 PMID:12718547 PMID:15798219 GO_REF:0000041 GO_REF:0000107 RGD:729598 NCBI chr33:29,363,282...29,414,635
Ensembl chr33:29,358,452...29,430,424
JBrowse link
G PCYT1B phosphate cytidylyltransferase 1B, choline involved_in IEA UniProt
Ensembl
GO_REF:0000041 GO_REF:0000107 NCBI chr  X:20,076,298...20,207,837
Ensembl chr  X:20,079,772...20,207,722
JBrowse link
G PEMT phosphatidylethanolamine N-methyltransferase involved_in ISO
IBA
IEA
RGD
GO_Central
UniProt
InterPro
PMID:8344945 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 RGD:729486 NCBI chr 5:41,871,685...41,960,831
Ensembl chr 5:41,872,108...41,960,828
JBrowse link
phosphatidylcholine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 involved_in IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr13:18,586,886...18,697,339
Ensembl chr13:18,587,129...18,697,324
JBrowse link
G GDPD3 glycerophosphodiester phosphodiesterase domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:18,103,273...18,108,818
Ensembl chr 6:18,103,267...18,108,533
JBrowse link
G PLA2G10 phospholipase A2 group X involved_in ISO (PMID:12021277) UniProt PMID:12021277 NCBI chr 6:28,573,239...28,591,714
Ensembl chr 6:28,574,387...28,591,703
JBrowse link
G PLA2G15 phospholipase A2 group XV involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 5:81,269,914...81,280,700
Ensembl chr 5:81,269,920...81,280,700
JBrowse link
G PLA2G4A phospholipase A2 group IVA involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:19,804,412...19,955,215
Ensembl chr 7:19,832,664...19,966,936
JBrowse link
G PLA2G5 phospholipase A2 group V involved_in ISO (PMID:23533611) UniProt PMID:23533611 NCBI chr 2:78,762,851...78,781,642
Ensembl chr 2:78,762,852...78,781,983
JBrowse link
G PLA2G6 phospholipase A2 group VI involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:26,499,033...26,559,533
Ensembl chr10:26,509,695...26,634,087
JBrowse link
G PLA2G7 phospholipase A2 group VII involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr12:14,866,229...14,908,230
Ensembl chr12:14,866,229...14,908,114
JBrowse link
G PLB1 phospholipase B1 involved_in ISO PMID:9442065
PMID:9442064
UniProt PMID:9442064 PMID:9442065 RGD:30309923 RGD:633237 NCBI chr17:22,420,679...22,558,318
Ensembl chr17:22,440,651...22,557,737
JBrowse link
G PNLIPRP2 pancreatic lipase related protein 2 involved_in ISO (PMID:17401110) UniProt PMID:17401110 NCBI chr28:27,190,641...27,212,185
Ensembl chr28:27,139,230...27,212,178
JBrowse link
G PNPLA7 patatin like phospholipase domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:48,221,754...48,286,352
Ensembl chr 9:48,221,514...48,286,352
JBrowse link
G PNPLA8 patatin like phospholipase domain containing 8 involved_in ISO (PMID:15695510) UniProt PMID:15695510 NCBI chr18:12,134,921...12,181,496
Ensembl chr18:12,141,830...12,179,974
JBrowse link
phosphatidylethanolamine acyl-chain remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LPCAT3 lysophosphatidylcholine acyltransferase 3 involved_in IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr27:38,028,438...38,068,854
Ensembl chr27:38,028,120...38,068,502
JBrowse link
G LPCAT4 lysophosphatidylcholine acyltransferase 4 involved_in ISO (PMID:18458083) UniProt PMID:18458083 NCBI chr30:746,053...754,691
Ensembl chr30:743,407...754,409
JBrowse link
G LPGAT1 lysophosphatidylglycerol acyltransferase 1 involved_in ISO (PMID:35131264) UniProt PMID:35131264 NCBI chr 7:10,091,628...10,205,388
Ensembl chr 7:10,094,069...10,198,309
JBrowse link
G MBOAT1 membrane bound O-acyltransferase domain containing 1 involved_in ISO (PMID:18287005) UniProt PMID:18287005 NCBI chr35:18,721,582...18,837,155
Ensembl chr35:18,713,654...18,836,142
JBrowse link
G MBOAT2 membrane bound O-acyltransferase domain containing 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:6,090,746...6,217,139
Ensembl chr17:6,094,900...6,213,142
JBrowse link
G PLA2G2F phospholipase A2 group IIF involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:78,714,251...78,724,257
Ensembl chr 2:78,716,228...78,723,984
JBrowse link
G PLA2G4B phospholipase A2 group IVB involved_in ISO (PMID:16617059) UniProt PMID:16617059 NCBI chr30:8,865,941...8,878,687
Ensembl chr30:8,859,257...8,876,395
JBrowse link
positive regulation of phosphatidylcholine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACSL3 acyl-CoA synthetase long chain family member 3 involved_in ISO (PMID:18003621) UniProt PMID:18003621 NCBI chr37:28,882,264...28,929,451
Ensembl chr37:28,864,147...28,938,866
JBrowse link
G CAPN2 calpain 2 ISO RGD PMID:9481489 RGD:13792658 NCBI chr 7:40,333,379...40,367,158
Ensembl chr 7:40,334,012...40,377,037
JBrowse link
G RAB38 RAB38, member RAS oncogene family ISO RGD PMID:28438206 RGD:13524861 NCBI chr21:11,769,924...11,823,546
Ensembl chr21:11,769,351...11,822,815
JBrowse link
regulation of phosphatidylcholine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FABP3 fatty acid binding protein 3 acts_upstream_of_or_within ISO (PMID:15164767) MGI PMID:15164767 NCBI chr 2:69,651,140...69,659,082
Ensembl chr 2:69,650,322...69,658,443
JBrowse link
regulation of phosphatidylcholine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LDLR low density lipoprotein receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:50,115,175...50,152,443
Ensembl chr20:50,048,736...50,152,355
JBrowse link
G SCARB1 scavenger receptor class B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:5,035,797...5,122,383
Ensembl chr26:5,049,407...5,121,468
JBrowse link
regulation of phosphatidylcholine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA3 ATP binding cassette subfamily A member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:38,679,312...38,712,868
Ensembl chr 6:38,679,324...38,712,648
JBrowse link
G MFSD2A MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of
involved_in
ISO
IEA
(PMID:26005868)
(PMID:30074985)
ARUK-UCL
Ensembl
PMID:26005868 PMID:30074985 GO_REF:0000107 NCBI chr15:2,966,433...2,979,030
Ensembl chr15:2,966,461...2,978,968
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 22121
    cellular process 21652
      metabolic process 15394
        primary metabolic process 13985
          lipid metabolic process 1351
            phospholipid metabolic process 366
              glycerophospholipid metabolic process 276
                phosphatidylcholine metabolic process 61
                  1,2-diacyl-sn-glycero-3-phosphocholine metabolic process 0
                  negative regulation of phosphatidylcholine metabolic process + 2
                  phosphatidylcholine acyl-chain remodeling 12
                  phosphatidylcholine biosynthetic process + 20
                  phosphatidylcholine catabolic process + 15
                  phosphatidylethanolamine acyl-chain remodeling 7
                  positive regulation of phosphatidylcholine metabolic process + 3
                  regulation of phosphatidylcholine metabolic process + 10
paths to the root