Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Community Projects (beta) QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:platelet activating factor metabolic process
go back to main search page
Accession:GO:0046469 term browser browse the term
Definition:The chemical reactions and pathways involving platelet activating factor, 1-O-alkyl-2-acetyl-sn-glycerol 3-phosphocholine, where alkyl = hexadecyl or octadecyl. Platelet activating factor is an inflammatory mediator released from a variety of cells in response to various stimuli.
Synonyms:exact_synonym: PAF metabolic process;   PAF metabolism;   platelet activating factor metabolism


show annotations for term's descendants           Sort by:
platelet activating factor metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pla2g6 phospholipase A2 group VI involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 7:110,851,378...110,891,557
Ensembl chr 7:110,851,378...110,891,114 		JBrowse link
G Pla2g7 phospholipase A2 group VII involved_in ISO (PMID:10066756), (PMID:10504265), (PMID:11590221), (PMID:8624782) RGD PMID:8624782 PMID:10066756 PMID:10504265 PMID:11590221 NCBI chr 9:17,362,214...17,404,476
Ensembl chr 9:17,362,225...17,404,476 		JBrowse link
platelet activating factor biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chpt1 choline phosphotransferase 1 involved_in ISO
IEA		 (PMID:10893425)
GO_REF:0000107		 RGD
Ensembl		 PMID:10893425 GO_REF:0000107 NCBI chr 7:22,866,455...22,915,111
Ensembl chr 7:22,863,027...22,915,103 		JBrowse link
G Lpcat2 lysophosphatidylcholine acyltransferase 2 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:3708195|PMID:17182612)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:17182612 GO_REF:0000024 GO_REF:0000107 MGI:3708195 NCBI chr19:14,088,389...14,152,742
Ensembl chr19:14,089,686...14,152,829 		JBrowse link
G Pla2g4a phospholipase A2 group IVA involved_in ISO
IEA		 (MGI:1100762|PMID:9403692)
GO_REF:0000107		 RGD
Ensembl		 PMID:9403692 GO_REF:0000107 MGI:1100762 NCBI chr13:61,877,818...62,022,261
Ensembl chr13:61,877,813...62,022,266 		JBrowse link
G Pla2g4c phospholipase A2 group IVC involved_in ISO (PMID:19501189) RGD PMID:19501189 NCBI chr 1:74,237,714...74,275,757
Ensembl chr 1:74,236,211...74,274,656 		JBrowse link
G Pla2g5 phospholipase A2, group V IDA RGD PMID:11106649 RGD:2303037 NCBI chr 5:151,041,339...151,109,433
Ensembl chr 5:151,041,340...151,062,658 		JBrowse link
platelet activating factor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pla2g10 phospholipase A2, group X involved_in ISO
ISS		 (PMID:16962371)
GO_REF:0000024		 RGD
UniProt		 PMID:16962371 GO_REF:0000024 NCBI chr10:1,597,761...1,610,822
Ensembl chr10:1,597,761...1,609,000 		JBrowse link
G Pla2g7 phospholipase A2 group VII involved_in ISO (PMID:16371369) RGD PMID:16371369 NCBI chr 9:17,362,214...17,404,476
Ensembl chr 9:17,362,225...17,404,476 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19553
    metabolic process 11538
      nitrogen compound metabolic process 9399
        organonitrogen compound metabolic process 5645
          platelet activating factor metabolic process 8
            platelet activating factor biosynthetic process 5
            platelet activating factor catabolic process 2
Path 2
Term Annotations click to browse term
  biological_process 19553
    metabolic process 11538
      cellular metabolic process 10124
        phosphorus metabolic process 2159
          phosphate-containing compound metabolic process 2132
            phospholipid metabolic process 370
              glycerophospholipid metabolic process 275
                platelet activating factor metabolic process 8
                  platelet activating factor biosynthetic process 5
                  platelet activating factor catabolic process 2
paths to the root