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ONTOLOGY REPORT - ANNOTATIONS

Term:short-chain fatty acid metabolic process
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Accession:GO:0046459 term browser browse the term
Definition:The chemical reactions and pathways involving a short-chain fatty acid. A short-chain fatty acid has an aliphatic tail containing fewer than 6 carbons.
Comment:While there is not universal consensus on the lengths of short-, medium-, long- and very-long-chain fatty acids, the GO uses the definitions in ChEBI (see CHEBI:26666, CHEBI:59554, CHEBI:15904 and CHEBI:27283).
Synonyms:exact_synonym: short-chain fatty acid metabolism


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short-chain fatty acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot4 acyl-CoA thioesterase 4 involved_in IDA
ISO		 (MGI:3663233|PMID:16940157) HGNC-UCL
MGI		 PMID:16940157 GO_REF:0000119 MGI:3663233 MGI:4834177 NCBI chr12:84,084,028...84,091,497
Ensembl chr12:84,085,153...84,095,375 		JBrowse link
G Acot9 acyl-CoA thioesterase 9 involved_in IDA (MGI:6718236|PMID:23864032) UniProt PMID:23864032 MGI:6718236 NCBI chr  X:154,045,439...154,080,650
Ensembl chr  X:154,045,439...154,080,650 		JBrowse link
G Crat carnitine acetyltransferase involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:30,290,483...30,305,602
Ensembl chr 2:30,290,483...30,305,825 		JBrowse link
2-oxobutyrate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thnsl2 threonine synthase-like 2 (bacterial) involved_in IDA
IBA		 (MGI:3690523|PMID:17034760) BHF-UCL
GO_Central		 PMID:17034760 GO_REF:0000033 MGI:3690523 NCBI chr 6:71,105,150...71,121,364
Ensembl chr 6:71,105,150...71,121,423 		JBrowse link
2-oxobutyrate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phyh phytanoyl-CoA hydroxylase involved_in ISO RGD
MGI		 PMID:10588950 GO_REF:0000096 MGI:4417868 RGD:727286 NCBI chr 2:4,923,807...4,943,554
Ensembl chr 2:4,923,830...4,943,541 		JBrowse link
acetoacetic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tyrp1 tyrosinase-related protein 1 acts_upstream_of_or_within IMP (PMID:7665913) MGI PMID:7665913 NCBI chr 4:80,752,360...80,769,973
Ensembl chr 4:80,752,360...80,769,956 		JBrowse link
butyrate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acads acyl-Coenzyme A dehydrogenase, short chain involved_in ISO
IBA		 RGD
MGI
GO_Central		 PMID:3968063 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:2317678 NCBI chr 5:115,248,358...115,257,405
Ensembl chr 5:115,248,358...115,257,405 		JBrowse link
butyrate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot4 acyl-CoA thioesterase 4 NOT|involved_in ISO (PMID:16940157) HGNC-UCL PMID:16940157 NCBI chr12:84,084,028...84,091,497
Ensembl chr12:84,085,153...84,095,375 		JBrowse link
propionate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acss1 acyl-CoA synthetase short-chain family member 1 involved_in ISO RGD
MGI		 PMID:4334748 GO_REF:0000096 MGI:4417868 RGD:2317572 NCBI chr 2:150,460,031...150,510,160
Ensembl chr 2:150,460,025...150,510,420 		JBrowse link
G Acss2 acyl-CoA synthetase short-chain family member 2 involved_in ISO RGD
MGI		 PMID:4334748 GO_REF:0000096 MGI:4417868 RGD:2317572 NCBI chr 2:155,359,963...155,404,663
Ensembl chr 2:155,359,868...155,427,644 		JBrowse link
propionate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pck1 phosphoenolpyruvate carboxykinase 1, cytosolic involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:172,994,866...173,001,067
Ensembl chr 2:172,994,841...173,001,066 		JBrowse link
G Pck2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:55,777,721...55,787,477
Ensembl chr14:55,777,723...55,788,699 		JBrowse link
propionate metabolic process, methylmalonyl pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mmut methylmalonyl-Coenzyme A mutase involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:41,245,576...41,272,880
Ensembl chr17:41,245,576...41,272,879 		JBrowse link
short-chain fatty acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Oxsm 3-oxoacyl-ACP synthase, mitochondrial involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr14:6,219,955...6,231,111
Ensembl chr14:6,219,955...6,231,111 		JBrowse link
short-chain fatty acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ces1d carboxylesterase 1D acts_upstream_of_or_within IDA (PMID:16804080) MGI PMID:16804080 NCBI chr 8:93,892,700...93,924,432
Ensembl chr 8:93,892,696...93,924,466 		JBrowse link
G Ces1f carboxylesterase 1F acts_upstream_of_or_within IDA (PMID:16804080) MGI PMID:16804080 NCBI chr 8:93,982,864...94,006,394
Ensembl chr 8:93,982,864...94,006,375 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    metabolic process 11001
      cellular metabolic process 9207
        cellular lipid metabolic process 1100
          fatty acid metabolic process 485
            short-chain fatty acid metabolic process 15
              2-oxobutyrate metabolic process + 2
              acetoacetic acid metabolic process + 1
              butyrate metabolic process + 2
              glutamate catabolic process to 4-hydroxybutyrate 0
              propionate metabolic process + 5
              short-chain fatty acid biosynthetic process + 4
              short-chain fatty acid catabolic process + 6
Path 2
Term Annotations click to browse term
  biological_process 28573
    metabolic process 11001
      cellular metabolic process 9207
        organic acid metabolic process 1020
          oxoacid metabolic process 1013
            carboxylic acid metabolic process 991
              monocarboxylic acid metabolic process 735
                fatty acid metabolic process 485
                  short-chain fatty acid metabolic process 15
                    2-oxobutyrate metabolic process + 2
                    acetoacetic acid metabolic process + 1
                    butyrate metabolic process + 2
                    glutamate catabolic process to 4-hydroxybutyrate 0
                    propionate metabolic process + 5
                    short-chain fatty acid biosynthetic process + 4
                    short-chain fatty acid catabolic process + 6
paths to the root