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ONTOLOGY REPORT - ANNOTATIONS


Term:short-chain fatty acid metabolic process
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Accession:GO:0046459 term browser browse the term
Definition:The chemical reactions and pathways involving fatty acids with a chain length of less than C6.
Synonyms:exact_synonym: short-chain fatty acid metabolism


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short-chain fatty acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot4 acyl-CoA thioesterase 4 involved_in ISO (PMID:16940157)
(MGI:3663233|PMID:16940157)
RGD PMID:16940157 MGI:3663233 NCBI chr 6:107,517,668...107,522,952
Ensembl chr 6:107,517,668...107,522,952
JBrowse link
G Acot9 acyl-CoA thioesterase 9 involved_in ISO (MGI:6718236|PMID:23864032) RGD PMID:23864032 MGI:6718236 NCBI chr  X:43,543,069...43,592,200
Ensembl chr  X:43,543,070...43,592,200
JBrowse link
G Crat carnitine O-acetyltransferase involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:23485643)
UniProt
Ensembl
RGD
PMID:23485643 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:8,967,984...8,981,959
Ensembl chr 3:8,968,417...8,981,362
JBrowse link
2-oxobutyrate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thnsl2 threonine synthase-like 2 involved_in IBA
ISO
PMID:21873635
(MGI:3690523|PMID:17034760)
RGD PMID:17034760, PMID:21873635 MGI:3690523, RGD:13792537 NCBI chr 4:98,976,559...98,997,187
Ensembl chr 4:98,976,550...98,995,590
JBrowse link
2-oxobutyrate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phyh phytanoyl-CoA 2-hydroxylase IDA RGD PMID:10588950 RGD:727286 NCBI chr17:77,287,580...77,304,482
Ensembl chr17:77,287,188...77,304,530
JBrowse link
acetoacetic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tyrp1 tyrosinase-related protein 1 acts_upstream_of_or_within ISO MGI:1855960 (MGI:76308|PMID:7665913) RGD PMID:7665913 MGI:76308 NCBI chr 5:98,387,291...98,406,083
Ensembl chr 5:98,387,291...98,406,083
JBrowse link
butyrate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acads acyl-CoA dehydrogenase short chain involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:3968063, PMID:21873635 RGD:2317678, RGD:13792537 NCBI chr12:47,254,503...47,263,747
Ensembl chr12:47,254,484...47,263,747
JBrowse link
butyrate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot4 acyl-CoA thioesterase 4 NOT|involved_in ISO (PMID:16940157) RGD PMID:16940157 NCBI chr 6:107,517,668...107,522,952
Ensembl chr 6:107,517,668...107,522,952
JBrowse link
propionate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acss1 acyl-CoA synthetase short-chain family member 1 IDA RGD PMID:4334748 RGD:2317572 NCBI chr 3:146,420,346...146,470,293
Ensembl chr 3:146,420,346...146,470,293
JBrowse link
G Acss2 acyl-CoA synthetase short-chain family member 2 IDA RGD PMID:4334748 RGD:2317572 NCBI chr 3:151,032,925...151,075,856
Ensembl chr 3:151,032,952...151,075,856
JBrowse link
propionate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pck1 phosphoenolpyruvate carboxykinase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:171,213,936...171,219,885
Ensembl chr 3:171,213,936...171,219,871
JBrowse link
G Pck2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:34,216,735...34,224,357
Ensembl chr15:34,216,833...34,224,193
JBrowse link
short-chain fatty acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Oxsm 3-oxoacyl-ACP synthase, mitochondrial involved_in ISO (PMID:15668256) RGD PMID:15668256 NCBI chr15:10,462,380...10,466,496
Ensembl chr15:10,462,106...10,466,496
JBrowse link
short-chain fatty acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ces1d carboxylesterase 1D involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3654969|PMID:16804080)
Ensembl
RGD
PMID:16804080 GO_REF:0000107 MGI:3654969 NCBI chr19:15,195,514...15,239,827
Ensembl chr19:15,033,108...15,239,821
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19491
    metabolic process 11797
      cellular metabolic process 10755
        cellular lipid metabolic process 1018
          fatty acid metabolic process 427
            short-chain fatty acid metabolic process 13
              2-oxobutyrate metabolic process + 2
              acetoacetic acid metabolic process + 1
              butyrate metabolic process + 2
              glutamate catabolic process to 4-hydroxybutyrate 0
              propionate metabolic process + 4
              short-chain fatty acid biosynthetic process + 4
              short-chain fatty acid catabolic process + 5
Path 2
Term Annotations click to browse term
  biological_process 19491
    metabolic process 11797
      cellular metabolic process 10755
        organic acid metabolic process 1010
          oxoacid metabolic process 978
            carboxylic acid metabolic process 959
              monocarboxylic acid metabolic process 659
                fatty acid metabolic process 427
                  short-chain fatty acid metabolic process 13
                    2-oxobutyrate metabolic process + 2
                    acetoacetic acid metabolic process + 1
                    butyrate metabolic process + 2
                    glutamate catabolic process to 4-hydroxybutyrate 0
                    propionate metabolic process + 4
                    short-chain fatty acid biosynthetic process + 4
                    short-chain fatty acid catabolic process + 5
paths to the root