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ONTOLOGY REPORT - ANNOTATIONS


Term:carboxylic acid biosynthetic process
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Accession:GO:0046394 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of carboxylic acids, any organic acid containing one or more carboxyl (-COOH) groups.
Synonyms:exact_synonym: carboxylic acid anabolism;   carboxylic acid biosynthesis;   carboxylic acid formation;   carboxylic acid synthesis


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'de novo' L-methionine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101972215 betaine--homocysteine S-methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936549:6,938,100...6,956,380
Ensembl chrNW_004936549:6,938,092...6,957,363
JBrowse link
10-formyltetrahydrofolate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:8,100,977...8,170,244
Ensembl chrNW_004936495:8,100,912...8,171,800
JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:3,877,423...4,060,129
Ensembl chrNW_004936489:3,876,680...4,051,933
JBrowse link
2-oxobutyrate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thnsl2 threonine synthase like 2 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936712:684,711...699,714
Ensembl chrNW_004936712:681,133...699,792
JBrowse link
9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chrNW_004936503:8,869,073...8,953,726
Ensembl chrNW_004936503:8,868,961...8,918,532
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2662611|PMID:11876656) MGI
Ensembl
PMID:11876656 GO_REF:0000107 MGI:2662611 NCBI chrNW_004936471:19,175,997...19,263,335
Ensembl chrNW_004936471:19,175,992...19,263,335
JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family member A1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2662611|PMID:11876656) MGI
Ensembl
PMID:11876656 GO_REF:0000107 MGI:2662611 NCBI chrNW_004936560:2,562,394...2,580,261
Ensembl chrNW_004936560:2,562,748...2,580,201
JBrowse link
G Dhrs9 dehydrogenase/reductase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:10,465,701...10,487,534
Ensembl chrNW_004936469:10,465,701...10,487,534
JBrowse link
G LOC101969148 cytochrome P450 1A1 ISO 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chrNW_004936471:33,682,730...33,688,332
Ensembl chrNW_004936471:33,682,730...33,688,332
JBrowse link
acetate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acss1 acyl-CoA synthetase short chain family member 1 ISO RGD PMID:4334748 RGD:2317572 NCBI chrNW_004936620:739,633...800,472
Ensembl chrNW_004936620:739,633...800,803
JBrowse link
G Acss2 acyl-CoA synthetase short chain family member 2 ISO RGD PMID:4334748 RGD:2317572 NCBI chrNW_004936561:5,794,685...5,842,619
Ensembl chrNW_004936561:5,795,077...5,842,676
JBrowse link
amino acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adi1 acireductone dioxygenase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936532:1,684,281...1,693,835
Ensembl chrNW_004936532:1,682,223...1,691,104
JBrowse link
G Asns asparagine synthetase (glutamine-hydrolyzing) involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936585:2,834,202...2,854,740
Ensembl chrNW_004936585:2,834,008...2,855,387
JBrowse link
G Ass1 argininosuccinate synthase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936487:17,482,307...17,527,407
Ensembl chrNW_004936487:17,486,826...17,527,435
JBrowse link
G Bcat1 branched chain amino acid transaminase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936548:2,385,756...2,454,423 JBrowse link
G Bcat2 branched chain amino acid transaminase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936664:2,865,804...2,890,038
Ensembl chrNW_004936664:2,864,231...2,890,018
JBrowse link
G Cbs cystathionine beta-synthase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936500:976,043...1,003,559
Ensembl chrNW_004936500:987,128...1,003,388
JBrowse link
G Enoph1 enolase-phosphatase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936738:2,034,169...2,062,271 JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936636:617,376...640,424
Ensembl chrNW_004936636:617,356...640,932
JBrowse link
G LOC101963666 enolase-phosphatase E1-like involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936765:337,546...338,719 JBrowse link
G LOC101971073 branched-chain-amino-acid aminotransferase, cytosolic involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936680:1,578,614...1,580,123 JBrowse link
G LOC101975532 delta-1-pyrroline-5-carboxylate synthase involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chrNW_004936636:3,779,259...3,800,846
Ensembl chrNW_004936636:3,760,326...3,801,073
JBrowse link
G LOC120890996 enolase-phosphatase E1-like involved_in IEA UniProt GO_REF:0000043
G Mri1 methylthioribose-1-phosphate isomerase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936659:2,526,274...2,532,878
Ensembl chrNW_004936659:2,527,472...2,532,416
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936484:16,087,924...16,180,089
Ensembl chrNW_004936484:16,087,923...16,180,148
JBrowse link
G Otc ornithine transcarbamylase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936502:5,234,253...5,291,891
Ensembl chrNW_004936502:5,234,253...5,291,891
JBrowse link
G Phgdh phosphoglycerate dehydrogenase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936627:4,414,122...4,448,347
Ensembl chrNW_004936627:4,414,122...4,448,623
JBrowse link
G Psat1 phosphoserine aminotransferase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936632:4,392,165...4,422,670
Ensembl chrNW_004936632:4,391,459...4,423,264
JBrowse link
G Pycr1 pyrroline-5-carboxylate reductase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936594:5,439,911...5,443,535
Ensembl chrNW_004936594:5,439,175...5,443,564
JBrowse link
G Pycr2 pyrroline-5-carboxylate reductase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936526:2,721,579...2,726,699
Ensembl chrNW_004936526:2,720,521...2,726,762
JBrowse link
G Pycr3 pyrroline-5-carboxylate reductase 3 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936470:8,527,896...8,531,788
Ensembl chrNW_004936470:8,528,103...8,531,569
JBrowse link
arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase involved_in IEA UniProt
Ensembl
GO_REF:0000041 GO_REF:0000107 NCBI chrNW_004936543:7,688,788...7,699,842
Ensembl chrNW_004936543:7,688,741...7,699,851
JBrowse link
G Ass1 argininosuccinate synthase 1 involved_in ISO
IEA
RGD
TreeGrafter
UniProt
Ensembl
InterPro
PMID:12470967 GO_REF:0000002 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 RGD:631755 NCBI chrNW_004936487:17,482,307...17,527,407
Ensembl chrNW_004936487:17,486,826...17,527,435
JBrowse link
G Nags N-acetylglutamate synthase involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936541:501,981...507,994
Ensembl chrNW_004936541:502,034...506,496
JBrowse link
arginine biosynthetic process via ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936543:7,688,788...7,699,842
Ensembl chrNW_004936543:7,688,741...7,699,851
JBrowse link
G Otc ornithine transcarbamylase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936502:5,234,253...5,291,891
Ensembl chrNW_004936502:5,234,253...5,291,891
JBrowse link
asparagine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asdurf ASNSD1 upstream open reading frame involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936506:8,304,508...8,313,613
Ensembl chrNW_004936506:8,304,353...8,308,845
JBrowse link
G Asns asparagine synthetase (glutamine-hydrolyzing) involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:2573597) RGD
TreeGrafter
InterPro
Ensembl
UniProt
MGI
PMID:2573597 PMID:2887559 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 RGD:2316002 NCBI chrNW_004936585:2,834,202...2,854,740
Ensembl chrNW_004936585:2,834,008...2,855,387
JBrowse link
G Asnsd1 asparagine synthetase domain containing 1 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043
aspartate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:53641|PMID:4193185) MGI
TreeGrafter
Ensembl
PMID:4193185 GO_REF:0000107 GO_REF:0000118 MGI:53641 NCBI chrNW_004936636:617,376...640,424
Ensembl chrNW_004936636:617,356...640,932
JBrowse link
G Got1l1 glutamic-oxaloacetic transaminase 1 like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936710:1,388,743...1,393,791
Ensembl chrNW_004936710:1,388,743...1,393,758
JBrowse link
beta-alanine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936537:1,660,461...2,439,305
Ensembl chrNW_004936537:1,660,477...2,439,273
JBrowse link
beta-alanine biosynthetic process via 3-ureidopropionate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upb1 beta-ureidopropionase 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936619:668,380...713,720
Ensembl chrNW_004936619:668,351...696,306
JBrowse link
bile acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd3 ATP binding cassette subfamily D member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:4,659,685...4,745,992
Ensembl chrNW_004936537:4,659,484...4,746,616
JBrowse link
G Acox2 acyl-CoA oxidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:2,494,568...2,525,956
Ensembl chrNW_004936473:2,494,554...2,526,787
JBrowse link
G Akr1d1 aldo-keto reductase family 1 member D1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:7508385) MGI
Ensembl
PMID:7508385 GO_REF:0000107 NCBI chrNW_004936592:2,486,219...2,522,796
Ensembl chrNW_004936592:2,491,681...2,522,796
JBrowse link
G Amacr alpha-methylacyl-CoA racemase ISO RGD PMID:11964182 RGD:704372 NCBI chrNW_004936518:7,072,436...7,088,927
Ensembl chrNW_004936518:7,072,403...7,088,929
JBrowse link
G Baat bile acid-CoA:amino acid N-acyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:9,536,032...9,544,901
Ensembl chrNW_004936524:9,536,010...9,545,076
JBrowse link
G Errfi1 ERBB receptor feedback inhibitor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5447601|PMID:22912762) MGI
Ensembl
PMID:22912762 GO_REF:0000107 MGI:5447601 NCBI chrNW_004936623:2,457,709...2,462,956
Ensembl chrNW_004936623:2,456,294...2,462,467
JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1933035|PMID:11279518) MGI
Ensembl
PMID:11279518 GO_REF:0000107 MGI:1933035 NCBI chrNW_004936668:62,103...81,549
Ensembl chrNW_004936668:67,535...81,505
JBrowse link
G Hsd17b10 hydroxysteroid 17-beta dehydrogenase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936751:399,743...402,200
Ensembl chrNW_004936751:399,701...402,344
JBrowse link
G LOC101955024 lanosterol 14-alpha demethylase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936621:2,209,255...2,232,404
Ensembl chrNW_004936621:2,209,199...2,232,531
JBrowse link
G LOC101955077 cytochrome P450 7B1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936496:8,900,320...9,072,109
Ensembl chrNW_004936496:8,899,965...9,072,089
JBrowse link
G LOC101963150 sterol 26-hydroxylase, mitochondrial involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:1,213,700...1,250,181
Ensembl chrNW_004936569:1,213,573...1,250,589
JBrowse link
G LOC101970910 cytochrome P450 7A1 involved_in IEA InterPro
TreeGrafter
UniProt
Ensembl
GO_REF:0000002 GO_REF:0000041 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936496:4,599,138...4,605,653
Ensembl chrNW_004936496:4,599,138...4,605,653
JBrowse link
G LOC101972335 24-hydroxycholesterol 7-alpha-hydroxylase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936476:13,697,598...13,819,362
Ensembl chrNW_004936476:13,697,583...13,819,109
JBrowse link
G LOC101977223 7-alpha-hydroxycholest-4-en-3-one 12-alpha-hydroxylase involved_in ISO (PMID:14643796)
(MGI:3588413|PMID:12393855)
UniProt PMID:12393855 PMID:14643796 MGI:3588413 NCBI chrNW_004936695:2,263,868...2,265,373
Ensembl chrNW_004936695:2,263,868...2,265,373
JBrowse link
G Pex2 peroxisomal biogenesis factor 2 acts_upstream_of_or_within ISO (MGI:3027293|PMID:14673138) MGI PMID:14673138 MGI:3027293 NCBI chrNW_004936702:1,573,616...1,626,323
Ensembl chrNW_004936702:1,573,650...1,591,004
JBrowse link
G Slc27a2 solute carrier family 27 member 2 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:12,259,779...12,298,760
Ensembl chrNW_004936471:12,259,734...12,298,760
JBrowse link
G Slc27a5 solute carrier family 27 member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937062:90,217...98,562
Ensembl chrNW_004937062:89,664...98,113
JBrowse link
G Star steroidogenic acute regulatory protein ISO RGD PMID:15382124 RGD:1600081 NCBI chrNW_004936710:1,523,289...1,530,181
Ensembl chrNW_004936710:1,523,355...1,529,672
JBrowse link
branched-chain amino acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat1 branched chain amino acid transaminase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936548:2,385,756...2,454,423 JBrowse link
G Bcat2 branched chain amino acid transaminase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936664:2,865,804...2,890,038
Ensembl chrNW_004936664:2,864,231...2,890,018
JBrowse link
G LOC101971073 branched-chain-amino-acid aminotransferase, cytosolic involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936680:1,578,614...1,580,123 JBrowse link
carnosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carns1 carnosine synthase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4457482|PMID:20097752), (MGI:5607487|PMID:24891507)
(PMID:20097752), (PMID:24891507)
MGI
TreeGrafter
Ensembl
InterPro
PMID:20097752 PMID:24891507 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 MGI:4457482 MGI:5607487 NCBI chrNW_004936599:2,322,797...2,331,604
Ensembl chrNW_004936599:2,322,815...2,331,599
JBrowse link
citrulline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO
IEA
RGD
TreeGrafter
PMID:7053379 GO_REF:0000118 RGD:10755426 NCBI chrNW_004936493:5,308,268...5,332,934
Ensembl chrNW_004936493:5,310,228...5,332,918
JBrowse link
G LOC101975532 delta-1-pyrroline-5-carboxylate synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936636:3,779,259...3,800,846
Ensembl chrNW_004936636:3,760,326...3,801,073
JBrowse link
G Otc ornithine transcarbamylase involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
PMID:9472964 GO_REF:0000107 GO_REF:0000118 RGD:4144071 NCBI chrNW_004936502:5,234,253...5,291,891
Ensembl chrNW_004936502:5,234,253...5,291,891
JBrowse link
creatine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gamt guanidinoacetate N-methyltransferase involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:3043413|PMID:15028668) RGD
TreeGrafter
UniProt
Ensembl
MGI
PMID:15028668 PMID:15533043 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 MGI:3043413 RGD:1359081 NCBI chrNW_004936588:721,436...724,475
Ensembl chrNW_004936588:721,313...724,524
JBrowse link
G Gatm glycine amidinotransferase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9218780) MGI
TreeGrafter
UniProt
Ensembl
PMID:9218780 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:8,017,611...8,032,703
Ensembl chrNW_004936471:8,017,603...8,032,703
JBrowse link
cyclooxygenase pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdkrb1 bradykinin receptor B1 involved_in ISO (PMID:23846981) AgBase PMID:23846981 NCBI chrNW_004936604:551,774...567,014 JBrowse link
G LOC101968980 prostaglandin G/H synthase 2-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936799:1,417,962...1,419,361 JBrowse link
G LOC101974307 protein SCO1 homolog, mitochondrial acts_upstream_of_or_within ISO (MGI:6093414|PMID:28973536) MGI PMID:28973536 MGI:6093414 NCBI chrNW_004936595:3,523,789...3,537,933
Ensembl chrNW_004936595:3,523,779...3,538,150
JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936487:10,745,465...10,758,812
Ensembl chrNW_004936487:10,745,327...10,758,823
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:52337|PMID:1419907) MGI
TreeGrafter
PMID:1419907 GO_REF:0000118 MGI:52337 NCBI chrNW_004936481:3,821,564...3,828,086 JBrowse link
G Sphk1 sphingosine kinase 1 ISO RGD PMID:18723875 RGD:2311353 NCBI chrNW_004936594:1,482,830...1,489,337
Ensembl chrNW_004936594:1,486,111...1,489,188
JBrowse link
cysteine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta-synthase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3044255|PMID:15030387) MGI
Ensembl
UniProt
PMID:15030387 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 MGI:3044255 NCBI chrNW_004936500:976,043...1,003,559
Ensembl chrNW_004936500:987,128...1,003,388
JBrowse link
G Cth cystathionine gamma-lyase involved_in ISO
IEA
RGD
Ensembl
UniProt
PMID:9359866 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 RGD:1359024 NCBI chrNW_004936591:1,619,446...1,643,667
Ensembl chrNW_004936591:1,619,446...1,643,665
JBrowse link
G Ggt1 gamma-glutamyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:762,278...791,610 JBrowse link
cysteine biosynthetic process from serine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta-synthase involved_in IEA InterPro
TreeGrafter
UniProt
GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936500:976,043...1,003,559
Ensembl chrNW_004936500:987,128...1,003,388
JBrowse link
cysteine biosynthetic process via cystathionine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta-synthase involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936500:976,043...1,003,559
Ensembl chrNW_004936500:987,128...1,003,388
JBrowse link
G Cth cystathionine gamma-lyase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936591:1,619,446...1,643,667
Ensembl chrNW_004936591:1,619,446...1,643,665
JBrowse link
D-serine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srr serine racemase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1347751|PMID:10557334), (MGI:1926659|PMID:11054547), (MGI:2183617|PMID:12021263), (MGI:3529732|PMID:15710237) MGI
TreeGrafter
PMID:10557334 PMID:11054547 PMID:12021263 PMID:15710237 GO_REF:0000118 MGI:1347751 MGI:1926659 MGI:2183617 MGI:3529732 NCBI chrNW_004936538:8,362,033...8,383,820 JBrowse link
dermatan sulfate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chst12 carbohydrate sulfotransferase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936823:187,920...210,818
Ensembl chrNW_004936823:187,957...209,176
JBrowse link
G Chst14 carbohydrate sulfotransferase 14 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:11470797) MGI
Ensembl
PMID:11470797 GO_REF:0000107 NCBI chrNW_004936471:3,930,167...3,932,356
Ensembl chrNW_004936471:3,930,388...3,931,518
JBrowse link
G Dse dermatan sulfate epimerase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936824:957,783...995,465
Ensembl chrNW_004936824:957,848...995,260
JBrowse link
fatty acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd3 ATP binding cassette subfamily D member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:4,659,685...4,745,992
Ensembl chrNW_004936537:4,659,484...4,746,616
JBrowse link
G Acaca acetyl-CoA carboxylase alpha involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
InterPro
UniProt
PMID:11735100 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 RGD:2317316 NCBI chrNW_004936490:927,769...1,191,483
Ensembl chrNW_004936490:927,769...1,191,481
JBrowse link
G Acacb acetyl-CoA carboxylase beta acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3700580|PMID:17210641) MGI
TreeGrafter
Ensembl
UniProt
InterPro
PMID:17210641 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 MGI:3700580 NCBI chrNW_004936769:950,970...1,053,671
Ensembl chrNW_004936769:950,845...1,051,887
JBrowse link
G Acly ATP citrate lyase involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
PMID:11735100 GO_REF:0000107 GO_REF:0000118 RGD:2317316 NCBI chrNW_004936490:16,758,001...16,798,152
Ensembl chrNW_004936490:16,757,985...16,798,237
JBrowse link
G Acsf3 acyl-CoA synthetase family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:700,218...736,875
Ensembl chrNW_004936641:700,187...736,941
JBrowse link
G Acsl3 acyl-CoA synthetase long chain family member 3 ISO RGD PMID:8663269 RGD:70280 NCBI chrNW_004936569:4,774,602...4,842,906
Ensembl chrNW_004936569:4,774,542...4,844,494
JBrowse link
G Acsm2b acyl-CoA synthetase medium chain family member 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936501:5,925,845...5,943,462 JBrowse link
G Acsm3 acyl-CoA synthetase medium chain family member 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2150539|PMID:11470804) MGI
TreeGrafter
Ensembl
PMID:11470804 GO_REF:0000107 GO_REF:0000118 MGI:2150539 NCBI chrNW_004936501:6,077,366...6,095,432
Ensembl chrNW_004936501:6,078,219...6,095,538
JBrowse link
G Acsm5 acyl-CoA synthetase medium chain family member 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936501:5,891,989...5,915,929
Ensembl chrNW_004936501:5,891,900...5,916,031
JBrowse link
G Cbr4 carbonyl reductase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936516:1,184,859...1,205,668
Ensembl chrNW_004936516:1,181,524...1,205,760
JBrowse link
G Elovl1 ELOVL fatty acid elongase 1 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000043 NCBI chrNW_004936474:24,765,173...24,769,903
Ensembl chrNW_004936474:24,764,718...24,769,947
JBrowse link
G Elovl2 ELOVL fatty acid elongase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936534:1,996,111...2,016,184
Ensembl chrNW_004936534:2,000,378...2,018,892
JBrowse link
G Elovl3 ELOVL fatty acid elongase 3 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936600:3,619,549...3,623,495
Ensembl chrNW_004936600:3,618,572...3,623,540
JBrowse link
G Elovl4 ELOVL fatty acid elongase 4 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000043 NCBI chrNW_004936510:10,246,901...10,276,049
Ensembl chrNW_004936510:10,246,356...10,276,753
JBrowse link
G Elovl5 ELOVL fatty acid elongase 5 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936476:7,536,635...7,618,271 JBrowse link
G Elovl6 ELOVL fatty acid elongase 6 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000043 NCBI chrNW_004936563:1,224,392...1,344,707
Ensembl chrNW_004936563:1,221,233...1,344,810
JBrowse link
G Elovl7 ELOVL fatty acid elongase 7 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000043 NCBI chrNW_004936480:7,642,188...7,711,245
Ensembl chrNW_004936480:7,642,187...7,711,250
JBrowse link
G Fa2h fatty acid 2-hydroxylase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936475:23,625,023...23,675,211
Ensembl chrNW_004936475:23,624,969...23,675,235
JBrowse link
G Fads1 fatty acid desaturase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936581:1,312,199...1,327,046
Ensembl chrNW_004936581:1,312,183...1,327,998
JBrowse link
G Fads2 fatty acid desaturase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936581:1,203,410...1,233,330
Ensembl chrNW_004936581:1,203,366...1,233,469
JBrowse link
G Fads3 fatty acid desaturase 3 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936581:1,184,277...1,198,793
Ensembl chrNW_004936581:1,184,271...1,199,502
JBrowse link
G Fads6 fatty acid desaturase 6 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936594:227,395...241,714
Ensembl chrNW_004936594:224,150...241,760
JBrowse link
G Fasn fatty acid synthase involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:5426758|PMID:22331133) RGD
TreeGrafter
UniProt
InterPro
Ensembl
MGI
PMID:15715522 PMID:22331133 GO_REF:0000002 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 MGI:5426758 RGD:2317317 NCBI chrNW_004936594:5,591,785...5,609,886
Ensembl chrNW_004936594:5,592,609...5,608,972
JBrowse link
G Hacd1 3-hydroxyacyl-CoA dehydratase 1 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000043 NCBI chrNW_004936520:9,716,178...9,725,949
Ensembl chrNW_004936520:9,716,224...9,727,841
JBrowse link
G Hacd2 3-hydroxyacyl-CoA dehydratase 2 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000043 NCBI chrNW_004936725:1,614,637...1,705,111
Ensembl chrNW_004936725:1,614,622...1,705,132
JBrowse link
G Hacd3 3-hydroxyacyl-CoA dehydratase 3 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000043 NCBI chrNW_004936471:25,796,666...25,829,278
Ensembl chrNW_004936471:25,796,620...25,829,948
JBrowse link
G Hacd4 3-hydroxyacyl-CoA dehydratase 4 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000043 NCBI chrNW_004936652:2,647,639...2,677,156
Ensembl chrNW_004936652:2,643,712...2,677,207
JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1889102|PMID:10852923) MGI
Ensembl
PMID:10852923 GO_REF:0000107 MGI:1889102 NCBI chrNW_004936668:62,103...81,549
Ensembl chrNW_004936668:67,535...81,505
JBrowse link
G Hsd17b8 hydroxysteroid 17-beta dehydrogenase 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:25,648,604...25,650,757
Ensembl chrNW_004936476:25,648,604...25,650,757
JBrowse link
G Htd2 hydroxyacyl-thioester dehydratase type 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936473:2,669,483...2,671,225
Ensembl chrNW_004936473:2,670,676...2,671,179
JBrowse link
G Lipc lipase C, hepatic type involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:19,604,083...19,733,721
Ensembl chrNW_004936471:19,703,236...19,733,686
JBrowse link
G Lipg lipase G, endothelial type involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936497:13,406,402...13,429,833
Ensembl chrNW_004936497:13,406,357...13,429,890
JBrowse link
G LOC101955374 elongation of very long chain fatty acids protein 5-like involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004938951:187...1,346 JBrowse link
G LOC101964310 acyl-CoA desaturase 1-like involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chrNW_004936600:5,260,647...5,273,142 JBrowse link
G LOC101965270 acyl-CoA desaturase 1 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chrNW_004936600:5,339,983...5,349,597 JBrowse link
G LOC101965950 stearoyl-CoA desaturase involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chrNW_004936600:5,396,411...5,410,069 JBrowse link
G LOC101966452 acyl-CoA desaturase 1-like involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chrNW_004936600:5,462,368...5,474,526 JBrowse link
G LOC101970046 acyl-coenzyme A synthetase ACSM4, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936501:6,030,722...6,050,527
Ensembl chrNW_004936501:6,030,722...6,050,088
JBrowse link
G LOC101973650 fatty acid desaturase 2-like protein FADS2B involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936581:5,520,691...5,551,566 JBrowse link
G LOC101974086 acyl-coenzyme A synthetase ACSM1, mitochondrial-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936501:5,969,596...5,995,806 JBrowse link
G LOC110597362 prostaglandin E synthase 3-like involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004937400:19,561...21,205 JBrowse link
G Lpl lipoprotein lipase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936555:4,084,099...4,108,219
Ensembl chrNW_004936555:4,084,099...4,108,365
JBrowse link
G Mcat malonyl-CoA-acyl carrier protein transacylase involved_in IEA UniProt
Ensembl
GO_REF:0000041 GO_REF:0000107 NCBI chrNW_004936718:970,342...978,836
Ensembl chrNW_004936718:970,339...978,851
JBrowse link
G Mecr mitochondrial trans-2-enoyl-CoA reductase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936474:13,146,572...13,183,707
Ensembl chrNW_004936474:13,147,938...13,183,770
JBrowse link
G Mlycd malonyl-CoA decarboxylase involved_in ISO (PMID:15003260)
PMID:15105298
UniProt PMID:15003260 PMID:15105298 RGD:1600796 NCBI chrNW_004936641:3,836,418...3,846,485 JBrowse link
G Ndufab1 NADH:ubiquinone oxidoreductase subunit AB1 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936501:8,232,920...8,240,675
Ensembl chrNW_004936501:8,232,140...8,240,739
JBrowse link
G Olah oleoyl-ACP hydrolase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936613:1,541,001...1,570,882 JBrowse link
G Oxsm 3-oxoacyl-ACP synthase, mitochondrial involved_in IEA InterPro
TreeGrafter
UniProt
GO_REF:0000002 GO_REF:0000041 GO_REF:0000043 GO_REF:0000118 NCBI chrNW_004936473:17,298,641...17,302,954
Ensembl chrNW_004936473:17,298,777...17,305,007
JBrowse link
G Pla1a phospholipase A1 member A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936536:6,515,151...6,548,943
Ensembl chrNW_004936536:6,515,115...6,548,954
JBrowse link
G Pla2g1b phospholipase A2 group IB involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936668:608,848...616,982
Ensembl chrNW_004936668:610,716...616,982
JBrowse link
G Pla2g4a phospholipase A2 group IVA involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936481:3,559,377...3,689,797
Ensembl chrNW_004936481:3,559,358...3,689,833
JBrowse link
G Prkag1 protein kinase AMP-activated non-catalytic subunit gamma 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936512:6,804,571...6,819,096
Ensembl chrNW_004936512:6,804,571...6,819,077
JBrowse link
G Prkag2 protein kinase AMP-activated non-catalytic subunit gamma 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936527:6,907,723...7,168,222
Ensembl chrNW_004936527:6,909,044...7,167,600
JBrowse link
G Prkag3 protein kinase AMP-activated non-catalytic subunit gamma 3 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936569:1,258,678...1,266,925
Ensembl chrNW_004936569:1,259,105...1,266,925
JBrowse link
G Prxl2b peroxiredoxin like 2B involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936737:998,313...1,000,757
Ensembl chrNW_004936737:998,186...1,000,764
JBrowse link
G Ptgds prostaglandin D2 synthase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936669:961,246...964,584
Ensembl chrNW_004936669:961,034...965,136
JBrowse link
G Ptges prostaglandin E synthase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936487:16,959,263...16,968,909
Ensembl chrNW_004936487:16,959,231...16,968,922
JBrowse link
G Ptges2 prostaglandin E synthase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936487:15,703,179...15,708,408
Ensembl chrNW_004936487:15,703,153...15,707,697
JBrowse link
G Ptges3 prostaglandin E synthase 3 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936646:969,674...990,532 JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936487:10,745,465...10,758,812
Ensembl chrNW_004936487:10,745,327...10,758,823
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936481:3,821,564...3,828,086 JBrowse link
G Scd5 stearoyl-CoA desaturase 5 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chrNW_004936738:1,755,000...1,895,292
Ensembl chrNW_004936738:1,754,310...1,895,303
JBrowse link
G Tecr trans-2,3-enoyl-CoA reductase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936659:3,051,657...3,080,948
Ensembl chrNW_004936659:3,051,566...3,084,788
JBrowse link
fatty acid elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd1 ATP binding cassette subfamily D member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936809:615,133...634,618
Ensembl chrNW_004936809:615,139...635,990
JBrowse link
G Elovl6 ELOVL fatty acid elongase 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2153981|PMID:11567032) MGI
Ensembl
PMID:11567032 GO_REF:0000107 MGI:2153981 NCBI chrNW_004936563:1,224,392...1,344,707
Ensembl chrNW_004936563:1,221,233...1,344,810
JBrowse link
G Hacd1 3-hydroxyacyl-CoA dehydratase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936520:9,716,178...9,725,949
Ensembl chrNW_004936520:9,716,224...9,727,841
JBrowse link
G Hacd2 3-hydroxyacyl-CoA dehydratase 2 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936725:1,614,637...1,705,111
Ensembl chrNW_004936725:1,614,622...1,705,132
JBrowse link
G Hacd3 3-hydroxyacyl-CoA dehydratase 3 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:25,796,666...25,829,278
Ensembl chrNW_004936471:25,796,620...25,829,948
JBrowse link
G Hacd4 3-hydroxyacyl-CoA dehydratase 4 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936652:2,647,639...2,677,156
Ensembl chrNW_004936652:2,643,712...2,677,207
JBrowse link
G Tecr trans-2,3-enoyl-CoA reductase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:3,051,657...3,080,948
Ensembl chrNW_004936659:3,051,566...3,084,788
JBrowse link
fatty acid elongation, monounsaturated fatty acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elovl1 ELOVL fatty acid elongase 1 involved_in IEA Ensembl
TreeGrafter
UniProt
GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:24,765,173...24,769,903
Ensembl chrNW_004936474:24,764,718...24,769,947
JBrowse link
G Elovl2 ELOVL fatty acid elongase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936534:1,996,111...2,016,184
Ensembl chrNW_004936534:2,000,378...2,018,892
JBrowse link
G Elovl3 ELOVL fatty acid elongase 3 involved_in IEA UniProt
TreeGrafter
Ensembl
GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936600:3,619,549...3,623,495
Ensembl chrNW_004936600:3,618,572...3,623,540
JBrowse link
G Elovl4 ELOVL fatty acid elongase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936510:10,246,901...10,276,049
Ensembl chrNW_004936510:10,246,356...10,276,753
JBrowse link
G Elovl5 ELOVL fatty acid elongase 5 involved_in IEA UniProt
TreeGrafter
GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936476:7,536,635...7,618,271 JBrowse link
G Elovl6 ELOVL fatty acid elongase 6 involved_in IEA UniProt
TreeGrafter
GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936563:1,224,392...1,344,707
Ensembl chrNW_004936563:1,221,233...1,344,810
JBrowse link
G Elovl7 ELOVL fatty acid elongase 7 involved_in IEA UniProt
TreeGrafter
GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936480:7,642,188...7,711,245
Ensembl chrNW_004936480:7,642,187...7,711,250
JBrowse link
G LOC101955374 elongation of very long chain fatty acids protein 5-like involved_in IEA UniProt
TreeGrafter
GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004938951:187...1,346 JBrowse link
fatty acid elongation, polyunsaturated fatty acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elovl1 ELOVL fatty acid elongase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:24,765,173...24,769,903
Ensembl chrNW_004936474:24,764,718...24,769,947
JBrowse link
G Elovl2 ELOVL fatty acid elongase 2 involved_in IEA UniProt
TreeGrafter
Ensembl
GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936534:1,996,111...2,016,184
Ensembl chrNW_004936534:2,000,378...2,018,892
JBrowse link
G Elovl3 ELOVL fatty acid elongase 3 involved_in IEA UniProt
TreeGrafter
Ensembl
GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936600:3,619,549...3,623,495
Ensembl chrNW_004936600:3,618,572...3,623,540
JBrowse link
G Elovl4 ELOVL fatty acid elongase 4 involved_in IEA Ensembl
TreeGrafter
UniProt
GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936510:10,246,901...10,276,049
Ensembl chrNW_004936510:10,246,356...10,276,753
JBrowse link
G Elovl5 ELOVL fatty acid elongase 5 involved_in IEA UniProt
TreeGrafter
GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936476:7,536,635...7,618,271 JBrowse link
G Elovl6 ELOVL fatty acid elongase 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936563:1,224,392...1,344,707
Ensembl chrNW_004936563:1,221,233...1,344,810
JBrowse link
G Elovl7 ELOVL fatty acid elongase 7 involved_in IEA UniProt
TreeGrafter
Ensembl
GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936480:7,642,188...7,711,245
Ensembl chrNW_004936480:7,642,187...7,711,250
JBrowse link
G LOC101955374 elongation of very long chain fatty acids protein 5-like involved_in IEA UniProt
TreeGrafter
GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004938951:187...1,346 JBrowse link
fatty acid elongation, saturated fatty acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elovl1 ELOVL fatty acid elongase 1 involved_in IEA UniProt
TreeGrafter
InterPro
Ensembl
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:24,765,173...24,769,903
Ensembl chrNW_004936474:24,764,718...24,769,947
JBrowse link
G Elovl2 ELOVL fatty acid elongase 2 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936534:1,996,111...2,016,184
Ensembl chrNW_004936534:2,000,378...2,018,892
JBrowse link
G Elovl3 ELOVL fatty acid elongase 3 involved_in IEA Ensembl
TreeGrafter
InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936600:3,619,549...3,623,495
Ensembl chrNW_004936600:3,618,572...3,623,540
JBrowse link
G Elovl4 ELOVL fatty acid elongase 4 involved_in IEA InterPro
TreeGrafter
Ensembl
UniProt
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936510:10,246,901...10,276,049
Ensembl chrNW_004936510:10,246,356...10,276,753
JBrowse link
G Elovl5 ELOVL fatty acid elongase 5 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936476:7,536,635...7,618,271 JBrowse link
G Elovl6 ELOVL fatty acid elongase 6 involved_in IEA UniProt
TreeGrafter
InterPro
Ensembl
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936563:1,224,392...1,344,707
Ensembl chrNW_004936563:1,221,233...1,344,810
JBrowse link
G Elovl7 ELOVL fatty acid elongase 7 involved_in IEA InterPro
TreeGrafter
UniProt
Ensembl
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936480:7,642,188...7,711,245
Ensembl chrNW_004936480:7,642,187...7,711,250
JBrowse link
G Hsd17b12 hydroxysteroid 17-beta dehydrogenase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:4,802,282...4,949,500
Ensembl chrNW_004936562:4,802,282...4,949,468
JBrowse link
G LOC101955374 elongation of very long chain fatty acids protein 5-like involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004938951:187...1,346 JBrowse link
gamma-aminobutyric acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase ISO RGD PMID:19540876 RGD:9588538 NCBI chrNW_004936530:7,543,743...7,621,392
Ensembl chrNW_004936530:7,543,682...7,622,667
JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 involved_in ISO (MGI:5697738|PMID:26430123) UniProt PMID:26430123 MGI:5697738 NCBI chrNW_004936503:8,869,073...8,953,726
Ensembl chrNW_004936503:8,868,961...8,918,532
JBrowse link
G Gad1 glutamate decarboxylase 1 involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
PMID:17712632 GO_REF:0000107 GO_REF:0000118 RGD:6480258 NCBI chrNW_004936509:1,160,559...1,201,037
Ensembl chrNW_004936509:1,161,094...1,201,576
JBrowse link
G Gad2 glutamate decarboxylase 2 involved_in ISO
IEA
RGD
TreeGrafter
PMID:22108820 GO_REF:0000118 RGD:401900601 NCBI chrNW_004936484:1,737,806...1,810,378
Ensembl chrNW_004936484:1,737,520...1,810,398
JBrowse link
G Slc1a3 solute carrier family 1 member 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3613135|PMID:15305132) MGI
Ensembl
PMID:15305132 GO_REF:0000107 MGI:3613135 NCBI chrNW_004936518:5,216,343...5,291,107
Ensembl chrNW_004936518:5,215,290...5,291,058
JBrowse link
G Slc38a1 solute carrier family 38 member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:4,438,827...4,504,416
Ensembl chrNW_004936512:4,444,684...4,487,165
JBrowse link
glutamate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gls glutaminase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936506:7,237,099...7,314,011
Ensembl chrNW_004936506:7,237,099...7,313,976
JBrowse link
G Gls2 glutaminase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936646:825,957...842,184
Ensembl chrNW_004936646:823,682...842,199
JBrowse link
G Glud1 glutamate dehydrogenase 1 involved_in ISO (PMID:11032875) BHF-UCL PMID:11032875 NCBI chrNW_004936601:5,415,857...5,435,964 JBrowse link
G Slc25a12 solute carrier family 25 member 12 ISO RGD PMID:19764902 RGD:13628741 NCBI chrNW_004936509:1,994,082...2,077,731
Ensembl chrNW_004936509:1,990,116...2,077,938
JBrowse link
glutamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Glul glutamate-ammonia ligase involved_in ISO
IEA
RGD
TreeGrafter
InterPro
PMID:28323 PMID:4403443 GO_REF:0000002 GO_REF:0000118 RGD:2301547 RGD:2301548 NCBI chrNW_004936481:7,293,301...7,301,416
Ensembl chrNW_004936481:7,293,091...7,306,202
JBrowse link
G Lgsn lengsin, lens protein with glutamine synthetase domain involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936476:1,624,287...1,656,734
Ensembl chrNW_004936476:1,624,222...1,659,510
JBrowse link
glycine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhfr dihydrofolate reductase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936469:67,962...83,116 JBrowse link
G LOC101975053 probable low-specificity L-threonine aldolase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936594:2,846,435...2,852,176 JBrowse link
G LOC101977937 probable low-specificity L-threonine aldolase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936594:2,839,027...2,843,333 JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO from L-allothreonine in the absence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chrNW_004936741:1,849,239...1,877,724
Ensembl chrNW_004936741:1,849,609...1,877,727
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO from L-allothreonine in the absence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chrNW_004936646:1,422,844...1,427,929
Ensembl chrNW_004936646:1,422,817...1,429,037
JBrowse link
glycine biosynthetic process from serine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO
IEA
in the presence of tetrahydrofolate RGD
TreeGrafter
InterPro
PMID:3110140 GO_REF:0000002 GO_REF:0000118 RGD:2300383 NCBI chrNW_004936741:1,849,239...1,877,724
Ensembl chrNW_004936741:1,849,609...1,877,727
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 involved_in ISO
IEA
in the presence of tetrahydrofolate RGD
TreeGrafter
InterPro
PMID:3110140 GO_REF:0000002 GO_REF:0000118 RGD:2300383 NCBI chrNW_004936646:1,422,844...1,427,929
Ensembl chrNW_004936646:1,422,817...1,429,037
JBrowse link
glycine biosynthetic process, by transamination of glyoxylate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
PMID:12383475 GO_REF:0000107 GO_REF:0000118 RGD:1599457 NCBI chrNW_004936745:856,915...867,477
Ensembl chrNW_004936745:857,102...867,477
JBrowse link
G Agxt2 alanine--glyoxylate aminotransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:6,508,928...6,544,324
Ensembl chrNW_004936518:6,508,928...6,544,146
JBrowse link
glycolate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936623:2,422,780...2,436,817
Ensembl chrNW_004936623:2,422,833...2,436,817
JBrowse link
hepoxilin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox12b arachidonate 12-lipoxygenase, 12R type involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936595:1,310,556...1,321,974
Ensembl chrNW_004936595:1,310,534...1,321,985
JBrowse link
G Alox15 arachidonate 15-lipoxygenase involved_in ISO
IEA
RGD
TreeGrafter
PMID:15123652 GO_REF:0000118 RGD:5509794 NCBI chrNW_004936677:3,232,183...3,241,307
Ensembl chrNW_004936677:3,232,183...3,241,253
JBrowse link
G Alox15b arachidonate 15-lipoxygenase type B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936595:1,279,944...1,288,321
Ensembl chrNW_004936595:1,279,944...1,288,321
JBrowse link
G Alox5 arachidonate 5-lipoxygenase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936554:7,807,914...7,848,691
Ensembl chrNW_004936554:7,808,355...7,867,931
JBrowse link
G Aloxe3 arachidonate lipoxygenase 3 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936595:1,329,492...1,350,914
Ensembl chrNW_004936595:1,329,435...1,350,923
JBrowse link
G Gstp1 glutathione S-transferase pi 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:2,197,681...2,200,642
Ensembl chrNW_004936599:2,197,634...2,201,050
JBrowse link
G LOC101963157 polyunsaturated fatty acid (12S)/(13S)-lipoxygenase, epidermal-type-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936595:136,425...142,289 JBrowse link
G LOC101963440 polyunsaturated fatty acid lipoxygenase ALOX12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936595:269,085...282,445
Ensembl chrNW_004936595:270,271...282,660
JBrowse link
hydroxylysine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plod2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936519:9,053,192...9,139,221
Ensembl chrNW_004936519:9,053,033...9,140,059
JBrowse link
G Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:1,090,268...1,097,170
Ensembl chrNW_004936543:1,090,253...1,097,301
JBrowse link
icosanoid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101977410 cytochrome P450 4A6-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:27,784,879...27,796,021 JBrowse link
G LOC101977879 cytochrome P450 4A11-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:27,815,547...27,827,848 JBrowse link
G LOC101978636 cytochrome P450 4A11-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:27,915,337...27,926,156 JBrowse link
G Pla2g4a phospholipase A2 group IVA acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3709446|PMID:17293613) MGI
Ensembl
PMID:17293613 GO_REF:0000107 MGI:3709446 NCBI chrNW_004936481:3,559,377...3,689,797
Ensembl chrNW_004936481:3,559,358...3,689,833
JBrowse link
isoleucine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ilvbl ilvB acetolactate synthase like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936596:5,343,895...5,352,804
Ensembl chrNW_004936596:5,343,761...5,354,264
JBrowse link
G Sds serine dehydratase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936668:3,208,810...3,213,465
Ensembl chrNW_004936668:3,206,458...3,215,617
JBrowse link
G Sdsl serine dehydratase like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936668:3,222,894...3,232,736
Ensembl chrNW_004936668:3,222,904...3,232,626
JBrowse link
kynurenic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ido1 indoleamine 2,3-dioxygenase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3837074|PMID:19234212) MGI
Ensembl
PMID:19234212 GO_REF:0000107 MGI:3837074 NCBI chrNW_004936843:658,058...672,662
Ensembl chrNW_004936843:657,979...672,700
JBrowse link
G Kmo kynurenine 3-monooxygenase ISO RGD PMID:15829251 RGD:13513901 NCBI chrNW_004936526:8,877,085...8,928,280
Ensembl chrNW_004936526:8,877,434...8,919,548
JBrowse link
L-ascorbic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1a1 aldo-keto reductase family 1 member A1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3588122|PMID:15769935) MGI
Ensembl
PMID:15769935 GO_REF:0000107 MGI:3588122 NCBI chrNW_004936474:26,680,736...26,696,996
Ensembl chrNW_004936474:26,680,676...26,697,214
JBrowse link
G Akr1b1 aldo-keto reductase family 1 member B involved_in ISO (MGI:4834110|PMID:20410296) MGI PMID:20410296 MGI:4834110 NCBI chrNW_004936579:1,312,175...1,328,397 JBrowse link
G Gsto1 glutathione S-transferase omega 1 ISO RGD PMID:9786866 RGD:70644 NCBI chrNW_004936600:1,932,152...1,943,342
Ensembl chrNW_004936600:1,930,695...1,943,422
JBrowse link
G LOC101974420 L-gulonolactone oxidase involved_in IEA Ensembl
UniProt
GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936675:471,975...492,986 JBrowse link
G Rgn regucalcin involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936502:12,872,938...12,891,270
Ensembl chrNW_004936502:12,872,824...12,891,506
JBrowse link
L-asparagine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asns asparagine synthetase (glutamine-hydrolyzing) involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936585:2,834,202...2,854,740
Ensembl chrNW_004936585:2,834,008...2,855,387
JBrowse link
L-methionine salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101971919 S-methylmethionine--homocysteine S-methyltransferase BHMT2 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936549:6,900,075...6,914,217
Ensembl chrNW_004936549:6,899,948...6,914,263
JBrowse link
G LOC101972215 betaine--homocysteine S-methyltransferase 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936549:6,938,100...6,956,380
Ensembl chrNW_004936549:6,938,092...6,957,363
JBrowse link
L-methionine salvage from methylthioadenosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adi1 acireductone dioxygenase 1 involved_in IEA InterPro
UniProt
Ensembl
GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936532:1,684,281...1,693,835
Ensembl chrNW_004936532:1,682,223...1,691,104
JBrowse link
G Apip APAF1 interacting protein involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936533:3,216,020...3,238,999
Ensembl chrNW_004936533:3,216,187...3,238,776
JBrowse link
G Enoph1 enolase-phosphatase 1 involved_in IEA UniProt
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000041 GO_REF:0000118 NCBI chrNW_004936738:2,034,169...2,062,271 JBrowse link
G LOC101963666 enolase-phosphatase E1-like involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936765:337,546...338,719 JBrowse link
G LOC120890996 enolase-phosphatase E1-like involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118
G Mri1 methylthioribose-1-phosphate isomerase 1 involved_in IEA UniProt
TreeGrafter
GO_REF:0000041 GO_REF:0000118 NCBI chrNW_004936659:2,526,274...2,532,878
Ensembl chrNW_004936659:2,527,472...2,532,416
JBrowse link
G Mtap methylthioadenosine phosphorylase involved_in IEA UniProt
TreeGrafter
GO_REF:0000041 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936652:3,431,588...3,468,770
Ensembl chrNW_004936652:3,431,171...3,472,071
JBrowse link
L-methionine salvage from S-adenosylmethionine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enoph1 enolase-phosphatase 1 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936738:2,034,169...2,062,271 JBrowse link
G Mri1 methylthioribose-1-phosphate isomerase 1 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936659:2,526,274...2,532,878
Ensembl chrNW_004936659:2,527,472...2,532,416
JBrowse link
L-phenylalanine biosynthetic process from chorismate via phenylpyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101962681 aspartate aminotransferase, mitochondrial-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936527:626,017...628,228 JBrowse link
G LOC101977971 aspartate aminotransferase, mitochondrial-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936739:419,221...420,552 JBrowse link
L-proline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101975532 delta-1-pyrroline-5-carboxylate synthase involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chrNW_004936636:3,779,259...3,800,846
Ensembl chrNW_004936636:3,760,326...3,801,073
JBrowse link
G Noxred1 NADP dependent oxidoreductase domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936488:6,219,528...6,245,438
Ensembl chrNW_004936488:6,219,753...6,244,440
JBrowse link
G Oat ornithine aminotransferase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936486:12,723,363...12,743,367
Ensembl chrNW_004936486:12,723,305...12,743,422
JBrowse link
G Pycr1 pyrroline-5-carboxylate reductase 1 involved_in IEA UniProt
TreeGrafter
GO_REF:0000041 GO_REF:0000118 NCBI chrNW_004936594:5,439,911...5,443,535
Ensembl chrNW_004936594:5,439,175...5,443,564
JBrowse link
G Pycr2 pyrroline-5-carboxylate reductase 2 involved_in IEA UniProt
TreeGrafter
GO_REF:0000041 GO_REF:0000118 NCBI chrNW_004936526:2,721,579...2,726,699
Ensembl chrNW_004936526:2,720,521...2,726,762
JBrowse link
G Pycr3 pyrroline-5-carboxylate reductase 3 involved_in IEA Ensembl
TreeGrafter
UniProt
GO_REF:0000041 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936470:8,527,896...8,531,788
Ensembl chrNW_004936470:8,528,103...8,531,569
JBrowse link
L-serine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phgdh phosphoglycerate dehydrogenase involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936627:4,414,122...4,448,347
Ensembl chrNW_004936627:4,414,122...4,448,623
JBrowse link
G Psat1 phosphoserine aminotransferase 1 involved_in IEA UniProt
TreeGrafter
Ensembl
InterPro
GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936632:4,392,165...4,422,670
Ensembl chrNW_004936632:4,391,459...4,423,264
JBrowse link
G Psph phosphoserine phosphatase involved_in IEA Ensembl
TreeGrafter
UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936543:7,900,319...7,922,529
Ensembl chrNW_004936543:7,900,283...7,922,541
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO RGD PMID:10457370 RGD:2300380 NCBI chrNW_004936646:1,422,844...1,427,929
Ensembl chrNW_004936646:1,422,817...1,429,037
JBrowse link
lactate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ins insulin involved_in ISO (PMID:8069456) AgBase PMID:8069456 NCBI chrNW_004936816:1,002,137...1,003,357
Ensembl chrNW_004936816:1,002,137...1,003,357
JBrowse link
G Park7 Parkinsonism associated deglycase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936623:2,422,780...2,436,817
Ensembl chrNW_004936623:2,422,833...2,436,817
JBrowse link
G Per2 period circadian regulator 2 involved_in ISO (MGI:5546525|PMID:23977055) UniProt PMID:23977055 MGI:5546525 NCBI chrNW_004936525:221,601...263,284
Ensembl chrNW_004936525:221,510...263,295
JBrowse link
lactate biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101966195 huntingtin acts_upstream_of_or_within ISO (MGI:3757902|PMID:17708681) MGI PMID:17708681 MGI:3757902 NCBI chrNW_004936477:20,443,101...20,577,167
Ensembl chrNW_004936477:20,443,113...20,577,071
Ensembl chrNW_004936477:20,443,113...20,577,071
JBrowse link
G LOC101970352 L-lactate dehydrogenase C chain acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3775056|PMID:18367675) MGI
Ensembl
PMID:18367675 GO_REF:0000107 MGI:3775056 NCBI chrNW_004936528:827,322...862,832
Ensembl chrNW_004936528:827,758...862,393
JBrowse link
leucine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat1 branched chain amino acid transaminase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936548:2,385,756...2,454,423 JBrowse link
G Bcat2 branched chain amino acid transaminase 2 involved_in ISO
IEA
RGD
TreeGrafter
PMID:11733007 GO_REF:0000118 RGD:1582175 NCBI chrNW_004936664:2,865,804...2,890,038
Ensembl chrNW_004936664:2,864,231...2,890,018
JBrowse link
G LOC101971073 branched-chain-amino-acid aminotransferase, cytosolic involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936680:1,578,614...1,580,123 JBrowse link
leukotriene A4 biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox5 arachidonate 5-lipoxygenase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936554:7,807,914...7,848,691
Ensembl chrNW_004936554:7,808,355...7,867,931
JBrowse link
leukotriene biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox5 arachidonate 5-lipoxygenase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3821938|PMID:19075240) MGI
Ensembl
PMID:19075240 GO_REF:0000107 MGI:3821938 NCBI chrNW_004936554:7,807,914...7,848,691
Ensembl chrNW_004936554:7,808,355...7,867,931
JBrowse link
G Alox5ap arachidonate 5-lipoxygenase activating protein involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:86611|PMID:9091580)
(MGI:3821938|PMID:19075240)
RGD
TreeGrafter
UniProt
Ensembl
MGI
PMID:2300173 PMID:9091580 PMID:19075240 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 MGI:3821938 MGI:86611 RGD:2313889 RGD:69749 NCBI chrNW_004936472:25,477,094...25,502,823
Ensembl chrNW_004936472:25,477,010...25,502,840
JBrowse link
G Fcer1a Fc fragment of IgE receptor Ia acts_upstream_of_or_within ISO (MGI:85068|PMID:9000133) MGI PMID:9000133 MGI:85068 NCBI chrNW_004936740:1,201,370...1,206,871 JBrowse link
G Lta4h leukotriene A4 hydrolase involved_in IEA Ensembl
TreeGrafter
UniProt
GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936507:12,082,373...12,120,078
Ensembl chrNW_004936507:12,082,068...12,120,091
JBrowse link
G Ltc4s leukotriene C4 synthase involved_in ISO
IEA
RGD
TreeGrafter
UniProt
PMID:14637132 GO_REF:0000043 GO_REF:0000118 RGD:2302289 NCBI chrNW_004936739:975,494...978,426
Ensembl chrNW_004936739:975,493...978,482
JBrowse link
G Mgst2 microsomal glutathione S-transferase 2 involved_in IEA UniProt
TreeGrafter
Ensembl
GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936535:7,995,185...8,015,463
Ensembl chrNW_004936535:7,995,248...8,015,463
JBrowse link
G Mgst3 microsomal glutathione S-transferase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:19,654,335...19,665,994
Ensembl chrNW_004936481:19,654,441...19,659,291
JBrowse link
G Pla2g1b phospholipase A2 group IB involved_in ISO (PMID:16005851) BHF-UCL PMID:16005851 NCBI chrNW_004936668:608,848...616,982
Ensembl chrNW_004936668:610,716...616,982
JBrowse link
G Pla2g4a phospholipase A2 group IVA involved_in IEA Ensembl
UniProt
GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936481:3,559,377...3,689,797
Ensembl chrNW_004936481:3,559,358...3,689,833
JBrowse link
G Pla2g5 phospholipase A2 group V involved_in ISO
IEA
RGD
Ensembl
PMID:11106649 GO_REF:0000107 RGD:2303037 NCBI chrNW_004936474:6,131,915...6,150,810
Ensembl chrNW_004936474:6,131,884...6,150,819
JBrowse link
G Prg3 proteoglycan 3, pro eosinophil major basic protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:5,109,165...5,113,617
Ensembl chrNW_004936581:5,109,165...5,113,411
JBrowse link
G Syk spleen associated tyrosine kinase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:85068|PMID:9000133) MGI
Ensembl
PMID:9000133 GO_REF:0000107 MGI:85068 NCBI chrNW_004936780:1,553,605...1,601,036
Ensembl chrNW_004936780:1,553,605...1,598,158
JBrowse link
leukotriene D4 biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ggt1 gamma-glutamyltransferase 1 involved_in ISO (PMID:14754911)
(PMID:21447318)
UniProt
BHF-UCL
PMID:14754911 PMID:21447318 NCBI chrNW_004936619:762,278...791,610 JBrowse link
G Ggt5 gamma-glutamyltransferase 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1306746|PMID:9774450)
(MGI:2384601|PMID:12163373)
MGI
TreeGrafter
Ensembl
PMID:9774450 PMID:12163373 GO_REF:0000107 GO_REF:0000118 MGI:1306746 MGI:2384601 NCBI chrNW_004936619:794,876...837,748
Ensembl chrNW_004936619:794,889...837,736
JBrowse link
lipoate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htd2 hydroxyacyl-thioester dehydratase type 2 acts_upstream_of_or_within ISO (MGI:6755648|PMID:33774475) MGI PMID:33774475 MGI:6755648 NCBI chrNW_004936473:2,669,483...2,671,225
Ensembl chrNW_004936473:2,670,676...2,671,179
JBrowse link
G Lias lipoic acid synthetase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2135807|PMID:11389890) MGI
Ensembl
UniProt
InterPro
PMID:11389890 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 MGI:2135807 NCBI chrNW_004936482:7,068,326...7,085,571
Ensembl chrNW_004936482:7,068,445...7,084,504
JBrowse link
lipoxin A4 biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox15 arachidonate 15-lipoxygenase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936677:3,232,183...3,241,307
Ensembl chrNW_004936677:3,232,183...3,241,253
JBrowse link
G Alox15b arachidonate 15-lipoxygenase type B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:1,279,944...1,288,321
Ensembl chrNW_004936595:1,279,944...1,288,321
JBrowse link
G LOC101963440 polyunsaturated fatty acid lipoxygenase ALOX12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:269,085...282,445
Ensembl chrNW_004936595:270,271...282,660
JBrowse link
lipoxin B4 biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101963440 polyunsaturated fatty acid lipoxygenase ALOX12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:269,085...282,445
Ensembl chrNW_004936595:270,271...282,660
JBrowse link
long-chain fatty acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsbg1 acyl-CoA synthetase bubblegum family member 1 ISO RGD PMID:11381125 RGD:68727 NCBI chrNW_004936471:36,767,656...36,822,677
Ensembl chrNW_004936471:36,767,652...36,822,722
JBrowse link
G Asah2 N-acylsphingosine amidohydrolase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936735:2,004,373...2,092,501
Ensembl chrNW_004936735:2,031,844...2,092,347
JBrowse link
G Elovl6 ELOVL fatty acid elongase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936563:1,224,392...1,344,707
Ensembl chrNW_004936563:1,221,233...1,344,810
JBrowse link
G Fads1 fatty acid desaturase 1 acts_upstream_of_or_within ISO (PMID:10601301) MGI PMID:10601301 NCBI chrNW_004936581:1,312,199...1,327,046
Ensembl chrNW_004936581:1,312,183...1,327,998
JBrowse link
G LOC101958900 glutathione S-transferase Mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936704:1,142,990...1,150,491
Ensembl chrNW_004936704:1,143,010...1,148,567
JBrowse link
G Ltc4s leukotriene C4 synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936739:975,494...978,426
Ensembl chrNW_004936739:975,493...978,482
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO (MGI:3619818|PMID:1150661) MGI PMID:1150661 MGI:3619818 NCBI chrNW_004936471:14,105,832...14,257,386
Ensembl chrNW_004936471:14,111,841...14,254,246
JBrowse link
G Plp1 proteolipid protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3619818|PMID:1150661) MGI
Ensembl
PMID:1150661 GO_REF:0000107 MGI:3619818 NCBI chrNW_004936499:10,534,953...10,553,411
Ensembl chrNW_004936499:10,534,950...10,551,012
JBrowse link
G Qki QKI, KH domain containing RNA binding acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3619818|PMID:1150661) MGI
Ensembl
PMID:1150661 GO_REF:0000107 MGI:3619818 NCBI chrNW_004936489:13,901,066...14,000,652
Ensembl chrNW_004936489:13,901,754...13,999,983
JBrowse link
lysine biosynthetic process via aminoadipic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aasdhppt aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936551:2,312,510...2,335,810
Ensembl chrNW_004936551:2,312,489...2,335,815
JBrowse link
G Aass aminoadipate-semialdehyde synthase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936605:3,135,977...3,190,956
Ensembl chrNW_004936605:3,136,018...3,190,948
JBrowse link
medium-chain fatty acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abhd1 abhydrolase domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936493:5,420,091...5,429,304
Ensembl chrNW_004936493:5,420,158...5,429,682
JBrowse link
G Abhd2 abhydrolase domain containing 2, acylglycerol lipase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936483:14,974,053...15,079,824
Ensembl chrNW_004936483:14,974,035...15,074,154
JBrowse link
G Abhd3 abhydrolase domain containing 3, phospholipase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936550:1,359,570...1,408,080
Ensembl chrNW_004936550:1,359,606...1,407,925
JBrowse link
G Acot7 acyl-CoA thioesterase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936623:1,112,021...1,191,190
Ensembl chrNW_004936623:1,112,338...1,191,064
JBrowse link
G Olah oleoyl-ACP hydrolase involved_in ISO (PMID:26663084)
PMID:8446599
UniProt PMID:8446599 PMID:26663084 RGD:13524614 NCBI chrNW_004936613:1,541,001...1,570,882 JBrowse link
G Oxsm 3-oxoacyl-ACP synthase, mitochondrial involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:17,298,641...17,302,954
Ensembl chrNW_004936473:17,298,777...17,305,007
JBrowse link
methionine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adi1 acireductone dioxygenase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936532:1,684,281...1,693,835
Ensembl chrNW_004936532:1,682,223...1,691,104
JBrowse link
G Enoph1 enolase-phosphatase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936738:2,034,169...2,062,271 JBrowse link
G LOC101963666 enolase-phosphatase E1-like involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936765:337,546...338,719 JBrowse link
G LOC101971919 S-methylmethionine--homocysteine S-methyltransferase BHMT2 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000117 NCBI chrNW_004936549:6,900,075...6,914,217
Ensembl chrNW_004936549:6,899,948...6,914,263
JBrowse link
G LOC101972215 betaine--homocysteine S-methyltransferase 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:3510291|PMID:15217352) RGD
UniProt
InterPro
MGI
PMID:15217352 PMID:15845641 GO_REF:0000002 GO_REF:0000117 MGI:3510291 RGD:1359026 NCBI chrNW_004936549:6,938,100...6,956,380
Ensembl chrNW_004936549:6,938,092...6,957,363
JBrowse link
G LOC120890996 enolase-phosphatase E1-like involved_in IEA UniProt GO_REF:0000043
G Mri1 methylthioribose-1-phosphate isomerase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936659:2,526,274...2,532,878
Ensembl chrNW_004936659:2,527,472...2,532,416
JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:8,100,977...8,170,244
Ensembl chrNW_004936495:8,100,912...8,171,800
JBrowse link
G Mthfr methylenetetrahydrofolate reductase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3510291|PMID:15217352) MGI
TreeGrafter
PMID:15217352 GO_REF:0000118 MGI:3510291 NCBI chrNW_004936474:623,438...637,849
Ensembl chrNW_004936474:623,291...638,193
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:1930456|PMID:11158293) RGD
UniProt
Ensembl
InterPro
MGI
PMID:11158293 PMID:11730351 PMID:15845641 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 MGI:1930456 RGD:1359026 RGD:1601423 NCBI chrNW_004936484:16,087,924...16,180,089
Ensembl chrNW_004936484:16,087,923...16,180,148
JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in IEA Ensembl
TreeGrafter
UniProt
GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936643:379,790...410,034
Ensembl chrNW_004936643:380,968...409,464
JBrowse link
monounsaturated fatty acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101964310 acyl-CoA desaturase 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936600:5,260,647...5,273,142 JBrowse link
G LOC101965270 acyl-CoA desaturase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936600:5,339,983...5,349,597 JBrowse link
G LOC101965950 stearoyl-CoA desaturase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936600:5,396,411...5,410,069 JBrowse link
G LOC101966452 acyl-CoA desaturase 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936600:5,462,368...5,474,526 JBrowse link
G Scd5 stearoyl-CoA desaturase 5 acts_upstream_of_or_within ISO (MGI:3623168|PMID:16443825) MGI PMID:16443825 MGI:3623168 NCBI chrNW_004936738:1,755,000...1,895,292
Ensembl chrNW_004936738:1,754,310...1,895,303
JBrowse link
N-acetylneuraminate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gne glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:4,184,831...4,234,257
Ensembl chrNW_004936524:4,196,830...4,252,163
JBrowse link
G Nanp N-acetylneuraminic acid phosphatase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936620:235,013...245,138
Ensembl chrNW_004936620:234,964...246,803
JBrowse link
negative regulation of bile acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf19 fibroblast growth factor 19 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5501367|PMID:23747249) MGI
Ensembl
PMID:23747249 GO_REF:0000107 MGI:5501367 NCBI chrNW_004936599:923,943...932,428
Ensembl chrNW_004936599:923,943...932,321
JBrowse link
G Malrd1 MAM and LDL receptor class A domain containing 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5501367|PMID:23747249) MGI
Ensembl
PMID:23747249 GO_REF:0000107 MGI:5501367 NCBI chrNW_004936520:7,926,273...8,504,777
Ensembl chrNW_004936520:7,926,280...8,526,149
JBrowse link
G Prox1 prospero homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936628:4,185,712...4,240,680
Ensembl chrNW_004936628:4,185,706...4,238,451
JBrowse link
negative regulation of citrulline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:944,825...1,039,920
Ensembl chrNW_004936567:950,797...993,245
JBrowse link
negative regulation of fatty acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadl acyl-CoA dehydrogenase long chain involved_in ISO (MGI:3526480|PMID:15639194) BHF-UCL PMID:15639194 MGI:3526480 NCBI chrNW_004936845:66,674...96,248
Ensembl chrNW_004936845:66,241...96,249
JBrowse link
G Acadvl acyl-CoA dehydrogenase very long chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:514,883...520,223
Ensembl chrNW_004936595:514,534...520,223
JBrowse link
G Apoc1 apolipoprotein C1 involved_in ISO (PMID:15576844) BHF-UCL PMID:15576844 NCBI chrNW_004936706:1,519,248...1,520,102 JBrowse link
G Apoc3 apolipoprotein C3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:2,106,927...2,108,412
Ensembl chrNW_004936542:2,106,318...2,108,603
JBrowse link
G Brca1 BRCA1 DNA repair associated involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Erlin1 ER lipid raft associated 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936636:80,583...116,027
Ensembl chrNW_004936636:80,564...116,694
JBrowse link
G Erlin2 ER lipid raft associated 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936710:1,193,679...1,210,059
Ensembl chrNW_004936710:1,193,411...1,210,739
JBrowse link
G Insig1 insulin induced gene 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3603108|PMID:16100574) MGI
Ensembl
PMID:16100574 GO_REF:0000107 MGI:3603108 NCBI chrNW_004936527:9,684,304...9,696,951
Ensembl chrNW_004936527:9,685,695...9,692,830
JBrowse link
G Insig2 insulin induced gene 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3603108|PMID:16100574) MGI
Ensembl
PMID:16100574 GO_REF:0000107 MGI:3603108 NCBI chrNW_004936469:52,120,063...52,140,646
Ensembl chrNW_004936469:52,117,733...52,140,765
JBrowse link
G Klhl25 kelch like family member 25 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:12,001,111...12,033,158
Ensembl chrNW_004936483:12,000,514...12,009,705
JBrowse link
G LOC101954488 CEA cell adhesion molecule 1 involved_in ISO PMID:16054098 UniProt PMID:16054098 RGD:11059593 NCBI chrNW_004936706:37,480...53,306 JBrowse link
G LOC101970910 cytochrome P450 7A1 involved_in ISO PMID:23536474 BHF-UCL PMID:23536474 RGD:13792517 NCBI chrNW_004936496:4,599,138...4,605,653
Ensembl chrNW_004936496:4,599,138...4,605,653
JBrowse link
G Trib3 tribbles pseudokinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:18,077,850...18,082,817
Ensembl chrNW_004936485:18,077,850...18,083,553
JBrowse link
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:5,373,303...5,492,950
Ensembl chrNW_004936474:5,373,186...5,493,635
JBrowse link
G Wdtc1 WD and tetratricopeptide repeats 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3770497|PMID:17767906) MGI
TreeGrafter
Ensembl
PMID:17767906 GO_REF:0000107 GO_REF:0000118 MGI:3770497 NCBI chrNW_004936474:11,565,535...11,631,660
Ensembl chrNW_004936474:11,565,479...11,634,214
JBrowse link
negative regulation of prostaglandin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pibf1 progesterone immunomodulatory binding factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936511:7,860,552...8,082,850
Ensembl chrNW_004936511:7,860,590...8,081,525
JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215
JBrowse link
negative regulation of quinolinate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acmsd aminocarboxymuconate semialdehyde decarboxylase involved_in IEA Ensembl
UniProt
GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936469:40,858,338...40,904,807
Ensembl chrNW_004936469:40,858,338...40,904,807
JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prmt3 protein arginine methyltransferase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936654:1,336,546...1,464,959
Ensembl chrNW_004936654:1,336,429...1,461,476
JBrowse link
ornithine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101975532 delta-1-pyrroline-5-carboxylate synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936636:3,779,259...3,800,846
Ensembl chrNW_004936636:3,760,326...3,801,073
JBrowse link
palmitic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot7 acyl-CoA thioesterase 7 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936623:1,112,021...1,191,190
Ensembl chrNW_004936623:1,112,338...1,191,064
JBrowse link
positive regulation of bile acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr1d1 nuclear receptor subfamily 1 group D member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,206,194...15,213,858
Ensembl chrNW_004936490:15,206,191...15,213,867
JBrowse link
G Star steroidogenic acute regulatory protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936710:1,523,289...1,530,181
Ensembl chrNW_004936710:1,523,355...1,529,672
JBrowse link
G Stard4 StAR related lipid transfer domain containing 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936531:5,865,840...5,877,591
Ensembl chrNW_004936531:5,866,021...5,877,597
JBrowse link
positive regulation of fatty acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen acts_upstream_of_or_within ISO (MGI:2154640|PMID:11606482) MGI PMID:11606482 MGI:2154640 NCBI chrNW_004936484:19,713,299...19,721,144
Ensembl chrNW_004936484:19,716,165...19,721,261
JBrowse link
G Apoa4 apolipoprotein A4 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936542:2,098,683...2,101,127
Ensembl chrNW_004936542:2,098,683...2,101,127
JBrowse link
G Apoa5 apolipoprotein A5 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936542:2,069,683...2,071,344
Ensembl chrNW_004936542:2,069,683...2,071,353
JBrowse link
G Apoc2 apolipoprotein C2 involved_in ISO (PMID:10727238) BHF-UCL PMID:10727238 NCBI chrNW_004936706:1,531,219...1,531,921 JBrowse link
G Elovl5 ELOVL fatty acid elongase 5 involved_in ISO (PMID:23749231) BHF-UCL PMID:23749231 NCBI chrNW_004936476:7,536,635...7,618,271 JBrowse link
G Hnf4a hepatocyte nuclear factor 4 alpha ISO RGD PMID:16800817 RGD:1624995 NCBI chrNW_004936530:2,401,053...2,425,989
Ensembl chrNW_004936530:2,401,043...2,454,466
JBrowse link
G Ins insulin involved_in ISO (PMID:14677856) CACAO PMID:14677856 NCBI chrNW_004936816:1,002,137...1,003,357
Ensembl chrNW_004936816:1,002,137...1,003,357
JBrowse link
G Kat2b lysine acetyltransferase 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:12,341,545...12,415,637
Ensembl chrNW_004936473:12,344,343...12,417,875
JBrowse link
G Lpgat1 lysophosphatidylglycerol acyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:1,520,692...1,627,479
Ensembl chrNW_004936557:1,556,526...1,621,456
JBrowse link
G Mid1ip1 MID1 interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936502:5,634,319...5,638,869
Ensembl chrNW_004936502:5,636,564...5,638,869
JBrowse link
G Mlxipl MLX interacting protein like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:2,839,105...2,856,997
Ensembl chrNW_004936543:2,839,105...2,857,002
JBrowse link
G Nr1h2 nuclear receptor subfamily 1 group H member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936889:223,137...229,968
Ensembl chrNW_004936889:223,101...229,990
JBrowse link
G Nr1h3 nuclear receptor subfamily 1 group H member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:1,937,665...1,946,680
Ensembl chrNW_004936562:1,937,667...1,946,669
JBrowse link
G Rgn regucalcin ISO RGD PMID:16817230 RGD:9590221 NCBI chrNW_004936502:12,872,938...12,891,270
Ensembl chrNW_004936502:12,872,824...12,891,506
JBrowse link
G Sirt2 sirtuin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:1,828,868...1,849,892
Ensembl chrNW_004936661:1,828,831...1,850,000
JBrowse link
G Slc45a3 solute carrier family 45 member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:6,757,223...6,776,970
Ensembl chrNW_004936557:6,757,223...6,777,087
JBrowse link
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936623:2,422,780...2,436,817
Ensembl chrNW_004936623:2,422,833...2,436,817
JBrowse link
positive regulation of prostaglandin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 involved_in ISO
IEA
RGD
TreeGrafter
PMID:8260938 GO_REF:0000118 RGD:2306959 NCBI chrNW_004936503:9,124,314...9,142,372
Ensembl chrNW_004936503:9,124,264...9,142,413
JBrowse link
G Avpr1a arginine vasopressin receptor 1A ISO RGD PMID:17254553 RGD:2300349 NCBI chrNW_004936545:1,788,995...1,795,842
Ensembl chrNW_004936545:1,786,571...1,794,709
JBrowse link
G Cd74 CD74 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:4,522,576...4,532,289
Ensembl chrNW_004936504:4,522,751...4,531,750
JBrowse link
G Il1b interleukin 1 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,251,678...1,256,807
Ensembl chrNW_004936783:1,252,158...1,257,165
JBrowse link
G Mapk9 mitogen-activated protein kinase 9 ISO RGD PMID:9786861 RGD:2304243 NCBI chrNW_004936739:551,678...602,027
Ensembl chrNW_004936739:551,629...602,047
JBrowse link
G Pla2g3 phospholipase A2 group III involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936755:307,166...312,683
Ensembl chrNW_004936755:306,313...312,683
JBrowse link
G Pla2g4a phospholipase A2 group IVA ISO RGD PMID:16203828 RGD:1642461 NCBI chrNW_004936481:3,559,377...3,689,797
Ensembl chrNW_004936481:3,559,358...3,689,833
JBrowse link
G Pparg peroxisome proliferator activated receptor gamma involved_in ISO (PMID:24287039) AgBase PMID:24287039 NCBI chrNW_004936602:1,230,907...1,368,588
Ensembl chrNW_004936602:1,230,907...1,304,743
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 involved_in ISO (PMID:21716255)
(MGI:5474549|PMID:21716255)
CAFA PMID:21716255 MGI:5474549 NCBI chrNW_004936481:3,821,564...3,828,086 JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101965278 retinol dehydrogenase 16 ISO RGD PMID:21138835 RGD:6771354 NCBI chrNW_004936646:1,195,200...1,200,778
Ensembl chrNW_004936646:1,194,547...1,200,897
JBrowse link
G Rdh10 retinol dehydrogenase 10 ISO RGD PMID:21138835 RGD:6771354 NCBI chrNW_004936648:2,060,131...2,088,021
Ensembl chrNW_004936648:2,060,125...2,088,833
JBrowse link
positive regulation of unsaturated fatty acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd1 ATP binding cassette subfamily D member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936809:615,133...634,618
Ensembl chrNW_004936809:615,139...635,990
JBrowse link
G Abcd2 ATP binding cassette subfamily D member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936607:1,292,964...1,345,671
Ensembl chrNW_004936607:1,292,888...1,343,334
JBrowse link
proline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101975532 delta-1-pyrroline-5-carboxylate synthase involved_in IEA Ensembl
UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936636:3,779,259...3,800,846
Ensembl chrNW_004936636:3,760,326...3,801,073
JBrowse link
G Pycr1 pyrroline-5-carboxylate reductase 1 involved_in IEA UniProt
Ensembl
InterPro
GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936594:5,439,911...5,443,535
Ensembl chrNW_004936594:5,439,175...5,443,564
JBrowse link
G Pycr2 pyrroline-5-carboxylate reductase 2 involved_in IEA InterPro
Ensembl
UniProt
GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936526:2,721,579...2,726,699
Ensembl chrNW_004936526:2,720,521...2,726,762
JBrowse link
G Pycr3 pyrroline-5-carboxylate reductase 3 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936470:8,527,896...8,531,788
Ensembl chrNW_004936470:8,528,103...8,531,569
JBrowse link
propionate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acss1 acyl-CoA synthetase short chain family member 1 ISO RGD PMID:4334748 RGD:2317572 NCBI chrNW_004936620:739,633...800,472
Ensembl chrNW_004936620:739,633...800,803
JBrowse link
G Acss2 acyl-CoA synthetase short chain family member 2 ISO RGD PMID:4334748 RGD:2317572 NCBI chrNW_004936561:5,794,685...5,842,619
Ensembl chrNW_004936561:5,795,077...5,842,676
JBrowse link
prostaglandin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd74 CD74 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:4,522,576...4,532,289
Ensembl chrNW_004936504:4,522,751...4,531,750
JBrowse link
G Daglb diacylglycerol lipase beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936750:17,411...105,436
Ensembl chrNW_004936750:78,548...105,281
JBrowse link
G Edn1 endothelin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:885,489...892,292
Ensembl chrNW_004936534:885,287...891,772
JBrowse link
G Edn2 endothelin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:23,061,219...23,064,525
Ensembl chrNW_004936474:23,060,905...23,064,566
JBrowse link
G LOC101960864 group 10 secretory phospholipase A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:2,841,209...2,857,570
Ensembl chrNW_004936501:2,841,660...2,854,952
JBrowse link
G LOC110597362 prostaglandin E synthase 3-like involved_in IEA UniProt
TreeGrafter
GO_REF:0000041 GO_REF:0000043 GO_REF:0000118 NCBI chrNW_004937400:19,561...21,205 JBrowse link
G Mif macrophage migration inhibitory factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:1,207,058...1,208,010
Ensembl chrNW_004936619:1,203,746...1,208,442
JBrowse link
G Pla2g2a phospholipase A2 group IIA involved_in ISO (MGI:5818640|PMID:27292189) UniProt PMID:27292189 MGI:5818640 NCBI chrNW_004936474:6,091,978...6,095,961
Ensembl chrNW_004936474:6,091,941...6,096,057
JBrowse link
G Pla2g4a phospholipase A2 group IVA involved_in IEA Ensembl
UniProt
GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936481:3,559,377...3,689,797
Ensembl chrNW_004936481:3,559,358...3,689,833
JBrowse link
G Pla2g4f phospholipase A2 group IVF acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3709446|PMID:17293613) MGI
Ensembl
PMID:17293613 GO_REF:0000107 MGI:3709446 NCBI chrNW_004936471:5,439,389...5,454,437
Ensembl chrNW_004936471:5,439,866...5,454,331
JBrowse link
G Pnpla8 patatin like phospholipase domain containing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936653:1,470,314...1,499,813
Ensembl chrNW_004936653:1,470,299...1,499,900
JBrowse link
G Prxl2b peroxiredoxin like 2B involved_in IEA Ensembl
TreeGrafter
UniProt
GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936737:998,313...1,000,757
Ensembl chrNW_004936737:998,186...1,000,764
JBrowse link
G Ptgds prostaglandin D2 synthase involved_in IEA Ensembl
UniProt
GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936669:961,246...964,584
Ensembl chrNW_004936669:961,034...965,136
JBrowse link
G Ptges prostaglandin E synthase involved_in ISO
IEA
RGD
TreeGrafter
UniProt
Ensembl
PMID:11067848 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 RGD:67929 NCBI chrNW_004936487:16,959,263...16,968,909
Ensembl chrNW_004936487:16,959,231...16,968,922
JBrowse link
G Ptges2 prostaglandin E synthase 2 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000043 NCBI chrNW_004936487:15,703,179...15,708,408
Ensembl chrNW_004936487:15,703,153...15,707,697
JBrowse link
G Ptges3 prostaglandin E synthase 3 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:3714109|PMID:17438133) RGD
TreeGrafter
UniProt
MGI
PMID:10922363 PMID:17438133 GO_REF:0000041 GO_REF:0000043 GO_REF:0000118 MGI:3714109 RGD:5688071 NCBI chrNW_004936646:969,674...990,532 JBrowse link
G Ptgis prostaglandin I2 synthase involved_in IEA
ISO
Ensembl
TreeGrafter
RGD
PMID:10359560 PMID:10536678 PMID:15684702 PMID:16094316 GO_REF:0000107 GO_REF:0000118 RGD:1580695 RGD:401959739 RGD:727270 RGD:8693629 NCBI chrNW_004936514:4,775,884...4,814,574
Ensembl chrNW_004936514:4,791,031...4,812,027
JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:2181847|PMID:12093889) RGD
UniProt
Ensembl
MGI
PMID:12093889 PMID:17673564 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 MGI:2181847 RGD:2300259 NCBI chrNW_004936487:10,745,465...10,758,812
Ensembl chrNW_004936487:10,745,327...10,758,823
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 involved_in ISO
IEA
RGD
UniProt
PMID:17673564 GO_REF:0000041 GO_REF:0000043 GO_REF:0000117 RGD:2300259 NCBI chrNW_004936481:3,821,564...3,828,086 JBrowse link
G Tbxas1 thromboxane A synthase 1 involved_in IEA Ensembl
UniProt
GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936592:4,038,163...4,192,772
Ensembl chrNW_004936592:4,038,074...4,192,808
JBrowse link
pyruvate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase ISO RGD PMID:12383475 RGD:1599457 NCBI chrNW_004936745:856,915...867,477
Ensembl chrNW_004936745:857,102...867,477
JBrowse link
G Hoga1 4-hydroxy-2-oxoglutarate aldolase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936636:2,101,184...2,125,377
Ensembl chrNW_004936636:2,102,036...2,125,532
JBrowse link
G Pklr pyruvate kinase L/R ISO RGD PMID:4273555 PMID:5492954 RGD:2302789 RGD:2302790 NCBI chrNW_004936580:4,770,977...4,799,316
Ensembl chrNW_004936580:4,767,109...4,779,916
JBrowse link
G Pkm pyruvate kinase M1/2 ISO RGD PMID:4273555 RGD:2302790 NCBI chrNW_004936471:31,589,322...31,617,891
Ensembl chrNW_004936471:31,589,324...31,617,873
JBrowse link
G Sds serine dehydratase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936668:3,208,810...3,213,465
Ensembl chrNW_004936668:3,206,458...3,215,617
JBrowse link
G Srr serine racemase involved_in ISO (PMID:18812225) UniProt PMID:18812225 NCBI chrNW_004936538:8,362,033...8,383,820 JBrowse link
quinolinate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Haao 3-hydroxyanthranilate 3,4-dioxygenase involved_in IEA UniProt
Ensembl
GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936508:8,971,516...8,987,235
Ensembl chrNW_004936508:8,971,477...8,986,404
JBrowse link
G Kmo kynurenine 3-monooxygenase involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936526:8,877,085...8,928,280
Ensembl chrNW_004936526:8,877,434...8,919,548
JBrowse link
G Kynu kynureninase involved_in IEA UniProt
Ensembl
GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936469:33,632,885...33,805,158
Ensembl chrNW_004936469:33,632,892...33,734,433
JBrowse link
G LOC101966195 huntingtin acts_upstream_of_or_within ISO (MGI:3653320|PMID:16697652) MGI PMID:16697652 MGI:3653320 NCBI chrNW_004936477:20,443,101...20,577,167
Ensembl chrNW_004936477:20,443,113...20,577,071
Ensembl chrNW_004936477:20,443,113...20,577,071
JBrowse link
regulation of arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:11,955,334...11,967,338
Ensembl chrNW_004936501:11,955,184...11,967,436
JBrowse link
regulation of bile acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr4 fibroblast growth factor receptor 4 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936597:1,388,394...1,397,731
Ensembl chrNW_004936597:1,385,624...1,397,758
JBrowse link
G LOC101970910 cytochrome P450 7A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:4,599,138...4,605,653
Ensembl chrNW_004936496:4,599,138...4,605,653
JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215
JBrowse link
regulation of fatty acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif6 eukaryotic translation initiation factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:5,471,113...5,477,679
Ensembl chrNW_004936561:5,471,102...5,477,813
JBrowse link
G Gip gastric inhibitory polypeptide involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936490:12,487,025...12,492,214
Ensembl chrNW_004936490:12,487,025...12,492,214
JBrowse link
G Pdk4 pyruvate dehydrogenase kinase 4 involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chrNW_004936585:4,701,012...4,713,421
Ensembl chrNW_004936585:4,700,418...4,714,450
JBrowse link
G Scap SREBF chaperone acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3770209|PMID:16054043) MGI
Ensembl
PMID:16054043 GO_REF:0000107 MGI:3770209 NCBI chrNW_004936596:1,124,573...1,180,219
Ensembl chrNW_004936596:1,122,042...1,180,297
JBrowse link
regulation of prostaglandin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fabp5 fatty acid binding protein 5 involved_in ISO (MGI:6157571|PMID:29440395) UniProt PMID:29440395 MGI:6157571 NCBI chrNW_004936656:2,881,552...2,886,192 JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 RGD:6771354 NCBI chrNW_004936503:8,869,073...8,953,726
Ensembl chrNW_004936503:8,868,961...8,918,532
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 involved_in ISO
IEA
RGD
Ensembl
PMID:15950969 PMID:21138835 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chrNW_004936471:19,175,997...19,263,335
Ensembl chrNW_004936471:19,175,992...19,263,335
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:1927016|PMID:11044606), (MGI:3055622|PMID:11013254), (MGI:3692370|PMID:16241904) RGD
Ensembl
MGI
PMID:11013254 PMID:11044606 PMID:15950969 PMID:16241904 PMID:21138835 GO_REF:0000107 MGI:1927016 MGI:3055622 MGI:3692370 RGD:6771322 RGD:6771354 NCBI chrNW_004936483:2,930,781...2,967,309
Ensembl chrNW_004936483:2,930,789...2,967,346
JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 RGD:6771322 NCBI chrNW_004936580:5,861,051...5,866,818
Ensembl chrNW_004936580:5,860,562...5,866,856
JBrowse link
G Dhrs9 dehydrogenase/reductase 9 ISO RGD PMID:15950969 PMID:21138835 RGD:6771322 RGD:6771354 NCBI chrNW_004936469:10,465,701...10,487,534
Ensembl chrNW_004936469:10,465,701...10,487,534
JBrowse link
G Rbp1 retinol binding protein 1 involved_in ISO
IEA
RGD
InterPro
PMID:15950969 GO_REF:0000002 RGD:6771322 NCBI chrNW_004936540:1,600,673...1,626,573
Ensembl chrNW_004936540:1,600,398...1,626,652
JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3709664|PMID:17473173) MGI
Ensembl
PMID:17473173 GO_REF:0000107 MGI:3709664 NCBI chrNW_004936648:2,060,131...2,088,021
Ensembl chrNW_004936648:2,060,125...2,088,833
JBrowse link
selenocysteine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sephs1 selenophosphate synthetase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936613:108,331...134,727
Ensembl chrNW_004936613:107,821...134,733
JBrowse link
G Sephs2 selenophosphate synthetase 2 acts_upstream_of_or_within ISO (MGI:3711593|PMID:17346238) MGI PMID:17346238 MGI:3711593 NCBI chrNW_004936501:12,891,303...12,893,201 JBrowse link
serine family amino acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:8,100,977...8,170,244
Ensembl chrNW_004936495:8,100,912...8,171,800
JBrowse link
short-chain fatty acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Oxsm 3-oxoacyl-ACP synthase, mitochondrial involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:17,298,641...17,302,954
Ensembl chrNW_004936473:17,298,777...17,305,007
JBrowse link
threonine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thnsl2 threonine synthase like 2 NOT|acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3690523|PMID:17034760) MGI
TreeGrafter
PMID:17034760 GO_REF:0000118 MGI:3690523 NCBI chrNW_004936712:684,711...699,714
Ensembl chrNW_004936712:681,133...699,792
JBrowse link
tyrosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pah phenylalanine hydroxylase ISO RGD PMID:16953590 RGD:1601531 NCBI chrNW_004936492:11,342,566...11,412,323
Ensembl chrNW_004936492:11,342,518...11,412,209
JBrowse link
tyrosine biosynthetic process, by oxidation of phenylalanine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pah phenylalanine hydroxylase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:58807|PMID:2308957) RGD
GOC
GOC
PMID:2308957 PMID:10839989 GO_REF:0000108 MGI:58807 RGD:1601535 NCBI chrNW_004936492:11,342,566...11,412,323
Ensembl chrNW_004936492:11,342,518...11,412,209
JBrowse link
G Pcbd1 pterin-4 alpha-carbinolamine dehydratase 1 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936521:7,843,945...7,847,827
Ensembl chrNW_004936521:7,845,870...7,848,426
JBrowse link
G Pcbd2 pterin-4 alpha-carbinolamine dehydratase 2 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936597:2,113,428...2,161,329
Ensembl chrNW_004936597:2,119,136...2,161,379
JBrowse link
UDP-glucuronate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ugdh UDP-glucose 6-dehydrogenase involved_in IEA UniProt
Ensembl
GO_REF:0000041 GO_REF:0000107 NCBI chrNW_004936482:7,090,241...7,118,315
Ensembl chrNW_004936482:7,089,621...7,118,284
JBrowse link
unsaturated fatty acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Decr2 2,4-dienoyl-CoA reductase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:542,365...553,541
Ensembl chrNW_004936501:547,063...552,914
JBrowse link
G Elovl1 ELOVL fatty acid elongase 1 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936474:24,765,173...24,769,903
Ensembl chrNW_004936474:24,764,718...24,769,947
JBrowse link
G Elovl2 ELOVL fatty acid elongase 2 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936534:1,996,111...2,016,184
Ensembl chrNW_004936534:2,000,378...2,018,892
JBrowse link
G Elovl3 ELOVL fatty acid elongase 3 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chrNW_004936600:3,619,549...3,623,495
Ensembl chrNW_004936600:3,618,572...3,623,540
JBrowse link
G Elovl4 ELOVL fatty acid elongase 4 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936510:10,246,901...10,276,049
Ensembl chrNW_004936510:10,246,356...10,276,753
JBrowse link
G Elovl5 ELOVL fatty acid elongase 5 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chrNW_004936476:7,536,635...7,618,271 JBrowse link
G Elovl6 ELOVL fatty acid elongase 6 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936563:1,224,392...1,344,707
Ensembl chrNW_004936563:1,221,233...1,344,810
JBrowse link
G Elovl7 ELOVL fatty acid elongase 7 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936480:7,642,188...7,711,245
Ensembl chrNW_004936480:7,642,187...7,711,250
JBrowse link
G Fads1 fatty acid desaturase 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:10601301) RGD
UniProt
MGI
PMID:10601301 PMID:11414679 GO_REF:0000041 RGD:632758 NCBI chrNW_004936581:1,312,199...1,327,046
Ensembl chrNW_004936581:1,312,183...1,327,998
JBrowse link
G Fads2 fatty acid desaturase 2 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936581:1,203,410...1,233,330
Ensembl chrNW_004936581:1,203,366...1,233,469
JBrowse link
G Fads3 fatty acid desaturase 3 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936581:1,184,277...1,198,793
Ensembl chrNW_004936581:1,184,271...1,199,502
JBrowse link
G LOC101955374 elongation of very long chain fatty acids protein 5-like involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chrNW_004938951:187...1,346 JBrowse link
G LOC101964310 acyl-CoA desaturase 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936600:5,260,647...5,273,142 JBrowse link
G LOC101965270 acyl-CoA desaturase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936600:5,339,983...5,349,597 JBrowse link
G LOC101965950 stearoyl-CoA desaturase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936600:5,396,411...5,410,069 JBrowse link
G LOC101966452 acyl-CoA desaturase 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936600:5,462,368...5,474,526 JBrowse link
G LOC101973650 fatty acid desaturase 2-like protein FADS2B involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936581:5,520,691...5,551,566 JBrowse link
G Scd5 stearoyl-CoA desaturase 5 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936738:1,755,000...1,895,292
Ensembl chrNW_004936738:1,754,310...1,895,303
JBrowse link
uroporphyrinogen III biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uros uroporphyrinogen III synthase involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
InterPro
PMID:17763925 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:4144811 NCBI chrNW_004936486:13,792,354...13,816,744
Ensembl chrNW_004936486:13,791,286...13,817,238
JBrowse link
valine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat1 branched chain amino acid transaminase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936548:2,385,756...2,454,423 JBrowse link
G Bcat2 branched chain amino acid transaminase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936664:2,865,804...2,890,038
Ensembl chrNW_004936664:2,864,231...2,890,018
JBrowse link
G Ilvbl ilvB acetolactate synthase like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936596:5,343,895...5,352,804
Ensembl chrNW_004936596:5,343,761...5,354,264
JBrowse link
G LOC101971073 branched-chain-amino-acid aminotransferase, cytosolic involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936680:1,578,614...1,580,123 JBrowse link
very long-chain fatty acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elovl1 ELOVL fatty acid elongase 1 involved_in IEA UniProt
TreeGrafter
Ensembl
InterPro
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:24,765,173...24,769,903
Ensembl chrNW_004936474:24,764,718...24,769,947
JBrowse link
G Elovl2 ELOVL fatty acid elongase 2 involved_in IEA Ensembl
TreeGrafter
InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936534:1,996,111...2,016,184
Ensembl chrNW_004936534:2,000,378...2,018,892
JBrowse link
G Elovl3 ELOVL fatty acid elongase 3 involved_in IEA Ensembl
TreeGrafter
UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936600:3,619,549...3,623,495
Ensembl chrNW_004936600:3,618,572...3,623,540
JBrowse link
G Elovl4 ELOVL fatty acid elongase 4 involved_in IEA InterPro
TreeGrafter
Ensembl
UniProt
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936510:10,246,901...10,276,049
Ensembl chrNW_004936510:10,246,356...10,276,753
JBrowse link
G Elovl5 ELOVL fatty acid elongase 5 involved_in IEA InterPro
TreeGrafter
UniProt
GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936476:7,536,635...7,618,271 JBrowse link
G Elovl6 ELOVL fatty acid elongase 6 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936563:1,224,392...1,344,707
Ensembl chrNW_004936563:1,221,233...1,344,810
JBrowse link
G Elovl7 ELOVL fatty acid elongase 7 involved_in IEA UniProt
TreeGrafter
Ensembl
InterPro
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936480:7,642,188...7,711,245
Ensembl chrNW_004936480:7,642,187...7,711,250
JBrowse link
G Hacd1 3-hydroxyacyl-CoA dehydratase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936520:9,716,178...9,725,949
Ensembl chrNW_004936520:9,716,224...9,727,841
JBrowse link
G Hacd2 3-hydroxyacyl-CoA dehydratase 2 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936725:1,614,637...1,705,111
Ensembl chrNW_004936725:1,614,622...1,705,132
JBrowse link
G Hacd3 3-hydroxyacyl-CoA dehydratase 3 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:25,796,666...25,829,278
Ensembl chrNW_004936471:25,796,620...25,829,948
JBrowse link
G Hacd4 3-hydroxyacyl-CoA dehydratase 4 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936652:2,647,639...2,677,156
Ensembl chrNW_004936652:2,643,712...2,677,207
JBrowse link
G LOC101955374 elongation of very long chain fatty acids protein 5-like involved_in IEA InterPro
TreeGrafter
UniProt
GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004938951:187...1,346 JBrowse link
G Tecr trans-2,3-enoyl-CoA reductase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936659:3,051,657...3,080,948
Ensembl chrNW_004936659:3,051,566...3,084,788
JBrowse link
G Tecrl trans-2,3-enoyl-CoA reductase like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936582:3,561,496...3,644,519
Ensembl chrNW_004936582:3,561,496...3,644,501
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15868
    metabolic process 9524
      cellular metabolic process 8295
        organic acid metabolic process 879
          organic acid biosynthetic process 299
            carboxylic acid biosynthetic process 295
              L-ascorbic acid biosynthetic process + 5
              N-acetylneuraminate biosynthetic process 2
              UDP-glucuronate biosynthetic process 1
              achromobactin biosynthetic process 0
              alginic acid biosynthetic process 0
              alpha-amino acid biosynthetic process + 70
              amino acid biosynthetic process + 70
              amino acid catabolic process to carboxylic acid via Ehrlich pathway + 0
              aromatic amino acid family biosynthetic process + 6
              bacillithiol biosynthetic process 0
              branched-chain amino acid biosynthetic process + 6
              carnosine biosynthetic process 1
              cephalosporin C biosynthetic process 0
              chrysobactin biosynthetic process 0
              cspyrone B1 biosynthetic process 0
              dicarboxylic acid biosynthetic process + 13
              endocrocin biosynthetic process + 0
              fumonisin biosynthetic process + 0
              gerfelin biosynthetic process + 0
              gibberellin biosynthetic process + 0
              helvolic acid biosynthetic process + 0
              icosanoid biosynthetic process + 49
              keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 0
              mannosylglycerate biosynthetic process 0
              monensin A biosynthetic process 0
              monocarboxylic acid biosynthetic process + 198
              monodictyphenone biosynthetic process + 0
              non-proteinogenic amino acid biosynthetic process + 16
              oxylipin biosynthetic process 0
              proteinogenic amino acid biosynthetic process + 57
              pyochelin biosynthetic process 0
              rhizobactin 1021 biosynthetic process 0
              sulfur amino acid biosynthetic process + 16
              tatiopterin biosynthetic process + 0
              tensidol B biosynthetic process + 0
              tricarboxylic acid biosynthetic process + 0
              uroporphyrinogen III biosynthetic process + 1
Path 2
Term Annotations click to browse term
  biological_process 15868
    metabolic process 9524
      small molecule metabolic process 1623
        organic acid metabolic process 879
          oxoacid metabolic process 862
            carboxylic acid metabolic process 848
              carboxylic acid biosynthetic process 295
                L-ascorbic acid biosynthetic process + 5
                N-acetylneuraminate biosynthetic process 2
                UDP-glucuronate biosynthetic process 1
                achromobactin biosynthetic process 0
                alginic acid biosynthetic process 0
                alpha-amino acid biosynthetic process + 70
                amino acid biosynthetic process + 70
                amino acid catabolic process to carboxylic acid via Ehrlich pathway + 0
                aromatic amino acid family biosynthetic process + 6
                bacillithiol biosynthetic process 0
                branched-chain amino acid biosynthetic process + 6
                carnosine biosynthetic process 1
                cephalosporin C biosynthetic process 0
                chrysobactin biosynthetic process 0
                cspyrone B1 biosynthetic process 0
                dicarboxylic acid biosynthetic process + 13
                endocrocin biosynthetic process + 0
                fumonisin biosynthetic process + 0
                gerfelin biosynthetic process + 0
                gibberellin biosynthetic process + 0
                helvolic acid biosynthetic process + 0
                icosanoid biosynthetic process + 49
                keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 0
                mannosylglycerate biosynthetic process 0
                monensin A biosynthetic process 0
                monocarboxylic acid biosynthetic process + 198
                monodictyphenone biosynthetic process + 0
                non-proteinogenic amino acid biosynthetic process + 16
                oxylipin biosynthetic process 0
                proteinogenic amino acid biosynthetic process + 57
                pyochelin biosynthetic process 0
                rhizobactin 1021 biosynthetic process 0
                sulfur amino acid biosynthetic process + 16
                tatiopterin biosynthetic process + 0
                tensidol B biosynthetic process + 0
                tricarboxylic acid biosynthetic process + 0
                uroporphyrinogen III biosynthetic process + 1
paths to the root