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ONTOLOGY REPORT - ANNOTATIONS

Term:deoxyribose phosphate catabolic process
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Accession:GO:0046386 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of deoxyribose phosphate, the phosphorylated sugar 2-deoxy-erythro-pentose.
Synonyms:exact_synonym: deoxyribose phosphate breakdown;   deoxyribose phosphate catabolism;   deoxyribose phosphate degradation


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deoxyribose phosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DERA deoxyribose-phosphate aldolase involved_in IEA UniProt GO_REF:0000041 NCBI chr12:15,911,332...16,037,381
Ensembl chr12:15,911,302...16,037,381 		JBrowse link
dADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT18 nudix hydrolase 18 involved_in IDA (PMID:22556419) UniProt PMID:22556419 NCBI chr 8:22,106,878...22,110,482
Ensembl chr 8:22,105,748...22,109,419 		JBrowse link
dAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:44,619,522...44,651,699
Ensembl chr20:44,584,896...44,652,252 		JBrowse link
G NT5C1A 5'-nucleotidase, cytosolic IA involved_in IDA (PMID:11133996) MGI PMID:11133996 NCBI chr 1:39,651,229...39,672,107
Ensembl chr 1:39,651,229...39,672,107 		JBrowse link
G PNP purine nucleoside phosphorylase involved_in IDA (PMID:6771276) MGI PMID:6771276 NCBI chr14:20,469,406...20,477,089
Ensembl chr14:20,461,992...20,477,094 		JBrowse link
G UOX urate oxidase (pseudogene) involved_in ISO (PMID:16462750) MGI PMID:16462750 NCBI chr 1:84,364,958...84,384,801
Ensembl chr 1:84,365,428...84,397,831 		JBrowse link
G URAD ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in ISO (PMID:16462750) MGI PMID:16462750 NCBI chr13:27,977,717...27,988,693
Ensembl chr13:27,977,717...27,988,693 		JBrowse link
G URAHP urate (hydroxyiso-) hydrolase, pseudogene involved_in ISO (PMID:16462750) MGI PMID:16462750 NCBI chr16:90,039,761...90,047,783
Ensembl chr16:90,043,914...90,047,597
Ensembl chr16:90,043,914...90,047,597 		JBrowse link
G XDH xanthine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:31,334,321...31,414,742
Ensembl chr 2:31,334,321...31,414,742 		JBrowse link
dATP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7731963)
(PMID:7592575)
(PMID:14607964), (PMID:9478961)
(PMID:7670465)		 Ensembl
MGI		 PMID:7592575 PMID:7670465 PMID:7731963 PMID:9478961 PMID:14607964 GO_REF:0000107 NCBI chr20:44,619,522...44,651,699
Ensembl chr20:44,584,896...44,652,252 		JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in IDA (PMID:24141705) UniProt PMID:24141705 NCBI chr20:36,889,773...36,951,708
Ensembl chr20:36,890,229...36,951,893 		JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:97,077,743...97,921,059
Ensembl chr 1:97,077,743...97,995,000 		JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:104,379,431...104,467,055
Ensembl chr 8:104,330,324...104,467,055 		JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:75,130,228...75,131,742
Ensembl chr17:75,130,225...75,131,757 		JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:24,495,332...24,528,390
Ensembl chr22:24,494,107...24,528,390 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:48,088,704...48,108,736
Ensembl chr 7:48,088,628...48,108,736 		JBrowse link
G UPP2 uridine phosphorylase 2 involved_in IDA (PMID:12849978) MGI PMID:12849978 NCBI chr 2:157,995,179...158,136,154
Ensembl chr 2:157,876,679...158,136,154 		JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 involved_in IMP
IBA		 (PMID:24467396) UniProt
GO_Central		 PMID:24467396 GO_REF:0000033 NCBI chr16:30,423,615...30,430,030
Ensembl chr16:30,423,615...30,430,030 		JBrowse link
depyrimidination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MBD4 methyl-CpG binding domain 4, DNA glycosylase involved_in TAS Reactome Reactome:R-HSA-110329 NCBI chr 3:129,430,947...129,439,948
Ensembl chr 3:129,430,947...129,440,179 		JBrowse link
G NEIL1 nei like DNA glycosylase 1 involved_in TAS Reactome Reactome:R-HSA-110329 NCBI chr15:75,347,039...75,357,115
Ensembl chr15:75,346,955...75,357,115 		JBrowse link
G NEIL2 nei like DNA glycosylase 2 involved_in TAS Reactome Reactome:R-HSA-110329 NCBI chr 8:11,769,710...11,787,345
Ensembl chr 8:11,769,639...11,787,345 		JBrowse link
G NTHL1 nth like DNA glycosylase 1 involved_in TAS Reactome Reactome:R-HSA-110329 NCBI chr16:2,039,820...2,047,834
Ensembl chr16:2,039,815...2,047,866 		JBrowse link
G OGG1 8-oxoguanine DNA glycosylase involved_in TAS Reactome Reactome:R-HSA-110329 NCBI chr 3:9,749,952...9,783,108
Ensembl chr 3:9,749,944...9,788,219 		JBrowse link
G SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 involved_in TAS Reactome Reactome:R-HSA-110329 NCBI chr12:54,158,235...54,188,985
Ensembl chr12:54,121,277...54,189,008 		JBrowse link
G TDG thymine DNA glycosylase involved_in TAS Reactome Reactome:R-HSA-110329 NCBI chr12:103,965,872...103,988,874
Ensembl chr12:103,965,822...103,988,874 		JBrowse link
G UNG uracil DNA glycosylase involved_in TAS Reactome Reactome:R-HSA-110329 NCBI chr12:109,097,597...109,110,992
Ensembl chr12:109,097,597...109,126,725 		JBrowse link
dGDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT18 nudix hydrolase 18 involved_in IDA (PMID:22556419) UniProt PMID:22556419 NCBI chr 8:22,106,878...22,110,482
Ensembl chr 8:22,105,748...22,109,419 		JBrowse link
dGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNPH1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 involved_in ISO PMID:17234634 MGI PMID:17234634 RGD:8553712 NCBI chr 6:43,225,629...43,229,481
Ensembl chr 6:43,225,629...43,229,481 		JBrowse link
G GDA guanine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:72,114,608...72,259,869
Ensembl chr 9:72,114,595...72,257,193 		JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:75,130,228...75,131,742
Ensembl chr17:75,130,225...75,131,757 		JBrowse link
G NT5C1A 5'-nucleotidase, cytosolic IA involved_in IDA (PMID:11133996) MGI PMID:11133996 NCBI chr 1:39,651,229...39,672,107
Ensembl chr 1:39,651,229...39,672,107 		JBrowse link
G NT5C2 5'-nucleotidase, cytosolic II involved_in ISO (PMID:5560407) MGI PMID:5560407 NCBI chr10:103,088,017...103,193,272
Ensembl chr10:103,087,185...103,277,605 		JBrowse link
G UOX urate oxidase (pseudogene) involved_in ISO (PMID:16462750) MGI PMID:16462750 NCBI chr 1:84,364,958...84,384,801
Ensembl chr 1:84,365,428...84,397,831 		JBrowse link
G URAD ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in ISO (PMID:16462750) MGI PMID:16462750 NCBI chr13:27,977,717...27,988,693
Ensembl chr13:27,977,717...27,988,693 		JBrowse link
G URAHP urate (hydroxyiso-) hydrolase, pseudogene involved_in ISO (PMID:16462750) MGI PMID:16462750 NCBI chr16:90,039,761...90,047,783
Ensembl chr16:90,043,914...90,047,597
Ensembl chr16:90,043,914...90,047,597 		JBrowse link
G XDH xanthine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:31,334,321...31,414,742
Ensembl chr 2:31,334,321...31,414,742 		JBrowse link
dGTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT15 nudix hydrolase 15 involved_in IDA
IBA		 (PMID:22556419) UniProt
GO_Central		 PMID:22556419 GO_REF:0000033 NCBI chr13:48,037,726...48,052,755
Ensembl chr13:48,037,726...48,047,221 		JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in IDA
IBA		 (PMID:24217394) UniProt
GO_Central		 PMID:24217394 GO_REF:0000033 NCBI chr20:36,889,773...36,951,708
Ensembl chr20:36,890,229...36,951,893 		JBrowse link
dITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT16 nudix hydrolase 16 involved_in
acts_upstream_of_or_within		 ISS
ISO		 (PMID:20081199) UniProt
MGI		 PMID:20081199 GO_REF:0000024 NCBI chr 3:131,381,671...131,388,830
Ensembl chr 3:131,381,671...131,388,830 		JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:75,130,228...75,131,742
Ensembl chr17:75,130,225...75,131,757 		JBrowse link
G TYMP thymidine phosphorylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:50,525,752...50,530,085
Ensembl chr22:50,525,752...50,530,032 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in
NOT|involved_in		 IEA
ISO		 (PMID:15772079) Ensembl
UniProt		 PMID:15772079 GO_REF:0000107 NCBI chr 7:48,088,704...48,108,736
Ensembl chr 7:48,088,628...48,108,736 		JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 NOT|involved_in IMP (PMID:24467396) UniProt PMID:24467396 NCBI chr16:30,423,615...30,430,030
Ensembl chr16:30,423,615...30,430,030 		JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:97,077,743...97,921,059
Ensembl chr 1:97,077,743...97,995,000 		JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:104,379,431...104,467,055
Ensembl chr 8:104,330,324...104,467,055 		JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:75,130,228...75,131,742
Ensembl chr17:75,130,225...75,131,757 		JBrowse link
G NT5M 5',3'-nucleotidase, mitochondrial involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12234672) Ensembl
MGI		 PMID:12234672 GO_REF:0000107 NCBI chr17:17,303,373...17,347,663
Ensembl chr17:17,303,335...17,347,663 		JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:24,495,332...24,528,390
Ensembl chr22:24,494,107...24,528,390 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:48,088,704...48,108,736
Ensembl chr 7:48,088,628...48,108,736 		JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase involved_in ISO
IBA
IEA		 RGD
GO_Central
InterPro
UniProt		 PMID:1315924 PMID:3032103 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 RGD:2300191 RGD:2301218 NCBI chr15:48,331,095...48,343,373
Ensembl chr15:48,331,011...48,343,373 		JBrowse link
G LINC03106 long intergenic non-protein coding RNA 3106 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:26,066,675...26,118,408
Ensembl chr 9:26,066,675...26,118,408 		JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IDA
IBA		 (PMID:10681516) UniProt
GO_Central		 PMID:10681516 GO_REF:0000033 NCBI chr17:75,130,228...75,131,742
Ensembl chr17:75,130,225...75,131,757 		JBrowse link
G NT5M 5',3'-nucleotidase, mitochondrial involved_in TAS
IBA		 (PMID:10899995) PINC
GO_Central		 PMID:10899995 GO_REF:0000033 NCBI chr17:17,303,373...17,347,663
Ensembl chr17:17,303,335...17,347,663 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19711
    cellular process 18963
      metabolic process 12918
        catabolic process 3025
          organophosphate catabolic process 275
            deoxyribose phosphate catabolic process 34
              2-deoxyribose 1-phosphate catabolic process 0
              purine deoxyribonucleotide catabolic process + 15
              pyrimidine deoxyribonucleotide catabolic process + 19
Path 2
Term Annotations click to browse term
  biological_process 19711
    cellular process 18963
      metabolic process 12918
        phosphorus metabolic process 2573
          phosphate-containing compound metabolic process 2570
            deoxyribose phosphate metabolic process 51
              deoxyribose phosphate catabolic process 34
                2-deoxyribose 1-phosphate catabolic process 0
                purine deoxyribonucleotide catabolic process + 15
                pyrimidine deoxyribonucleotide catabolic process + 19
paths to the root