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ONTOLOGY REPORT - ANNOTATIONS

Term:monosaccharide biosynthetic process
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Accession:GO:0046364 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of monosaccharides, polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms.
Synonyms:exact_synonym: monosaccharide anabolism;   monosaccharide biosynthesis;   monosaccharide formation;   monosaccharide synthesis


show annotations for term's descendants           Sort by:
fructose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b1 aldo-keto reductase family 1 member B1 involved_in ISO (PMID:17727625), (PMID:29238976) RGD PMID:17727625 PMID:29238976 NCBI chr 4:63,899,222...63,913,315
Ensembl chr 4:62,932,031...62,946,157 		JBrowse link
G Sord sorbitol dehydrogenase involved_in ISO
IEA		 (PMID:3365415), (PMID:6870831), (PMID:8487505)
GO_REF:0000107
MGI:3616090 (PMID:18799757), (PMID:9604875)		 RGD
Ensembl		 PMID:3365415 PMID:6870831 PMID:8487505 PMID:9604875 PMID:18799757 GO_REF:0000107 NCBI chr 3:129,638,282...129,669,727
Ensembl chr 3:109,184,676...109,216,133 		JBrowse link
gluconeogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldob aldolase, fructose-bisphosphate B involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 5:68,684,541...68,697,582
Ensembl chr 5:63,889,046...63,902,116 		JBrowse link
G Aldoc aldolase, fructose-bisphosphate C involved_in IEA
ISO		 GO_REF:0000107
(PMID:24958256)		 Ensembl
RGD		 PMID:24958256 GO_REF:0000107 NCBI chr10:63,715,544...63,719,133
Ensembl chr10:63,217,451...63,221,066 		JBrowse link
G Atf3 activating transcription factor 3 acts_upstream_of_or_within ISO
IEA		 (PMID:11916968)
GO_REF:0000107		 RGD
Ensembl		 PMID:11916968 GO_REF:0000107 NCBI chr13:105,274,103...105,331,653
Ensembl chr13:102,751,321...102,764,631 		JBrowse link
G Atf4 activating transcription factor 4 acts_upstream_of_or_within ISO
IEA		 (PMID:11916968)
GO_REF:0000107		 RGD
Ensembl		 PMID:11916968 GO_REF:0000107 NCBI chr 7:113,684,681...113,686,739
Ensembl chr 7:111,804,183...111,806,446 		JBrowse link
G C1qtnf12 C1q and TNF related 12 acts_upstream_of ISO
IEA		 (PMID:22275362)
GO_REF:0000107		 RGD
Ensembl		 PMID:22275362 GO_REF:0000107 NCBI chr 5:171,833,854...171,838,229
Ensembl chr 5:166,551,628...166,556,003 		JBrowse link
G Crtc2 CREB regulated transcription coactivator 2 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:16148943)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:16148943 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:178,007,233...178,017,397
Ensembl chr 2:175,709,644...175,719,763 		JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20852621)		 UniProt
RGD		 PMID:20852621 GO_REF:0000024 NCBI chr 7:20,417,526...20,481,791
Ensembl chr 7:18,529,823...18,594,091 		JBrowse link
G Eno1 enolase 1 involved_in ISO (PMID:30679508) RGD PMID:30679508 NCBI chr 5:166,002,867...166,014,252
Ensembl chr 5:160,719,951...160,731,336
Ensembl chr 3:160,719,951...160,731,336 		JBrowse link
G Eno2 enolase 2 IDA RGD PMID:15720133 RGD:2302795 NCBI chr 4:159,258,371...159,267,220
Ensembl chr 4:157,572,088...157,580,980 		JBrowse link
G ENSRNOG00000066874 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:92,898,827...92,899,972 JBrowse link
G Fbp1 fructose-bisphosphatase 1 involved_in IDA
IEA
ISO
IBA		 GO_REF:0000107
GO_REF:0000043
(PMID:30150719)
GO_REF:0000033
(PMID:19259699), (PMID:20096900)
GO_REF:0000041		 Ensembl
UniProt
RGD
GO_Central		 PMID:19259699 PMID:20096900 PMID:30150719 PMID:4353083 PMID:11440903 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107, RGD:2302851, RGD:2302970 NCBI chr17:2,212,941...2,235,749
Ensembl chr17:2,208,031...2,230,071 		JBrowse link
G Fbp2 fructose-bisphosphatase 2 involved_in IDA
IEA
IBA		 GO_REF:0000043
GO_REF:0000033
GO_REF:0000041		 UniProt
GO_Central
RGD		 PMID:4353083 PMID:11440903 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043, RGD:2302851, RGD:2302970 NCBI chr17:2,241,767...2,259,371
Ensembl chr17:2,236,336...2,253,698 		JBrowse link
G G6pc1 glucose-6-phosphatase catalytic subunit 1 involved_in TAS
IEA
IBA
ISO
IDA		 GO_REF:0000107
GO_REF:0000043
GO_REF:0000104
GO_REF:0000033
(PMID:33359667)
GO_REF:0000041
(PMID:8211187)		 Ensembl
UniProt
GO_Central
RGD		 PMID:8211187 PMID:33359667 PMID:8865366 PMID:11440903 PMID:4353083 More... GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107, RGD:728661, RGD:2302970, RGD:2302851, RGD:2302850 NCBI chr10:86,807,659...86,819,023
Ensembl chr10:86,257,668...86,333,804 		JBrowse link
G G6pc3 glucose 6 phosphatase catalytic subunit 3 involved_in IDA
IEA
IBA
ISO		 GO_REF:0000043
GO_REF:0000107
GO_REF:0000033
(PMID:15661744)
GO_REF:0000041		 UniProt
Ensembl
GO_Central
RGD		 PMID:15661744 PMID:4303362 PMID:11440903 PMID:4353083 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107, RGD:2302850, RGD:2302970, RGD:2302851 NCBI chr10:87,647,149...87,651,385
Ensembl chr10:87,146,901...87,151,221 		JBrowse link
G Gapdh glyceraldehyde-3-phosphate dehydrogenase involved_in IDA
ISO
IMP		 (PMID:28258188) RGD PMID:28258188 PMID:15720133 PMID:28258188 RGD:2302795, RGD:13792662 NCBI chr 4:159,648,592...159,653,436
Ensembl chr 4:157,962,343...157,966,235 		JBrowse link
G Gcg glucagon acts_upstream_of ISO
IEA		 (PMID:24051374)
GO_REF:0000107		 RGD
Ensembl		 PMID:24051374 GO_REF:0000107 NCBI chr 3:67,522,489...67,531,533
Ensembl chr 3:47,113,914...47,122,929 		JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:17545671)		 Ensembl
RGD		 PMID:17545671 GO_REF:0000107 NCBI chr 1:252,306,541...252,337,622
Ensembl chr 1:242,357,306...242,380,633 		JBrowse link
G Gpd1 glycerol-3-phosphate dehydrogenase 1 acts_upstream_of_or_within ISO
IEA		 (PMID:12093800)
GO_REF:0000107		 RGD
Ensembl		 PMID:12093800 GO_REF:0000107 NCBI chr 7:132,722,982...132,730,373
Ensembl chr 7:130,844,138...130,851,529 		JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 acts_upstream_of_or_within ISO
IEA		 MGI:2387347 (PMID:12093800)
GO_REF:0000107		 RGD
Ensembl		 PMID:12093800 GO_REF:0000107 NCBI chr 3:62,209,432...62,346,590
Ensembl chr 3:41,801,930...41,936,901 		JBrowse link
G Gpi glucose-6-phosphate isomerase involved_in IEA
ISO
IBA		 GO_REF:0000043
GO_REF:0000107
GO_REF:0000002
(PMID:31891762)
GO_REF:0000033		 UniProt
Ensembl
InterPro
RGD
GO_Central		 PMID:31891762 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 NCBI chr 1:95,965,389...95,996,932
Ensembl chr 1:86,828,216...86,856,086 		JBrowse link
G Gpt2 glutamic--pyruvic transaminase 2 IMP RGD PMID:25865565 RGD:11342811 NCBI chr19:37,700,023...37,734,551
Ensembl chr19:21,517,621...21,560,610 		JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of ISO
IEA		 MGI:95674 (PMID:24051374)
GO_REF:0000107		 RGD
Ensembl		 PMID:24051374 GO_REF:0000107 NCBI chr10:86,132,535...86,140,877
Ensembl chr10:85,632,216...85,640,166 		JBrowse link
G Kat2b lysine acetyltransferase 2B acts_upstream_of ISO
IEA		 MGI:2155884|MGI:95674 (PMID:24051374)
GO_REF:0000107		 RGD
Ensembl		 PMID:24051374 GO_REF:0000107 NCBI chr 9:6,799,101...6,903,616
Ensembl chr 9:6,562,288...6,667,064 		JBrowse link
G Lepr leptin receptor acts_upstream_of ISO
IEA		 MGI:1856009 (PMID:24051374)
GO_REF:0000107		 RGD
Ensembl		 PMID:24051374 GO_REF:0000107 NCBI chr 5:121,409,735...121,593,201
Ensembl chr 5:116,289,823...116,475,908 		JBrowse link
G Mdh2 malate dehydrogenase 2 involved_in ISO
IEA		 (PMID:12581790)
GO_REF:0000107		 RGD
Ensembl		 PMID:12581790 GO_REF:0000107 NCBI chr12:26,530,886...26,543,841
Ensembl chr12:20,894,262...20,907,271 		JBrowse link
G Pc pyruvate carboxylase involved_in IDA
IEA
ISO
IBA		 GO_REF:0000002
GO_REF:0000043
MGI:2449284|MGI:6382162 (PMID:10938127), (PMID:23423574), (PMID:31006591)
GO_REF:0000033
GO_REF:0000041		 InterPro
UniProt
RGD
GO_Central		 PMID:10938127 PMID:23423574 PMID:31006591 PMID:4353083 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043, RGD:2302851 NCBI chr 1:211,228,708...211,327,792
Ensembl chr 1:201,804,267...201,898,380 		JBrowse link
G Pck1 phosphoenolpyruvate carboxykinase 1 involved_in
acts_upstream_of_or_within		 TAS
IEA
IBA
ISO
IDA		 GO_REF:0000002
GO_REF:0000107
GO_REF:0000043
GO_REF:0000033
MGI:2449283|MGI:2449284 (PMID:10938127), (PMID:15347677), (PMID:19643083), (PMID:29230018), (PMID:34156032)
(PMID:11916968)
(PMID:26971250), (PMID:30193097)
GO_REF:0000041
PMID:4186849		 InterPro
Ensembl
UniProt
GO_Central
RGD		 PMID:10938127 PMID:11916968 PMID:15347677 PMID:19643083 PMID:26971250 More... GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107, RGD:625518, RGD:8553288, RGD:2302971, RGD:2302970, RGD:2302851, RGD:2302850 NCBI chr 3:182,348,572...182,354,521
Ensembl chr 3:161,930,256...161,936,191 		JBrowse link
G Pck2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) involved_in IDA
IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000002
GO_REF:0000033
MGI:97501 (PMID:23466304)
GO_REF:0000041		 Ensembl
InterPro
GO_Central
RGD
UniProt		 PMID:23466304 PMID:4353083 PMID:6049928 PMID:11440903 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000107, RGD:2302851, RGD:2302971, RGD:2302970 NCBI chr15:32,997,853...33,006,691
Ensembl chr15:29,027,894...29,037,283 		JBrowse link
G Per2 period circadian regulator 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:22504074)		 UniProt
RGD		 PMID:22504074 GO_REF:0000024 NCBI chr 9:99,454,828...99,497,069
Ensembl chr 9:92,007,296...92,049,459 		JBrowse link
G Pgam1 phosphoglycerate mutase 1 involved_in ISO (PMID:24958256) RGD PMID:24958256 NCBI chr 1:250,673,152...250,680,762
Ensembl chr 1:240,723,920...240,738,452 		JBrowse link
G Pgam2 phosphoglycerate mutase 2 IDA RGD PMID:15720133 RGD:2302795 NCBI chr14:84,895,763...84,897,874
Ensembl chr14:80,681,776...80,683,940 		JBrowse link
G Pgk1 phosphoglycerate kinase 1 involved_in IDA
IEA
ISO
IBA
IMP		 GO_REF:0000107
MGI:106918 (PMID:19643083)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:19643083 PMID:15720133 PMID:3091090 GO_REF:0000033 GO_REF:0000107, RGD:2302795, RGD:2302860 NCBI chr  X:75,336,988...75,352,962
Ensembl chr  X:71,271,440...71,287,418 		JBrowse link
G Pgk1l1 phosphoglycerate kinase 1 like 1 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000107		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:44,487,980...44,489,330
Ensembl chr 2:42,754,639...42,755,856 		JBrowse link
G Pgk2 phosphoglycerate kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:27,976,913...27,978,479
Ensembl chr 9:20,480,203...20,571,481 		JBrowse link
G Ppara peroxisome proliferator activated receptor alpha acts_upstream_of ISO
IEA		 MGI:1857774 (PMID:15232616)
GO_REF:0000107		 RGD
Ensembl		 PMID:15232616 GO_REF:0000107 NCBI chr 7:118,712,261...118,780,723
Ensembl chr 7:116,832,756...116,895,346 		JBrowse link
G Ppargc1a PPARG coactivator 1 alpha involved_in IEP
ISO
ISS		 (PMID:15716268)
(PMID:16753578), (PMID:23142079)
GO_REF:0000024		 RGD
UniProt		 PMID:15716268 PMID:16753578 PMID:23142079 PMID:21212096 GO_REF:0000024, RGD:9585757 NCBI chr14:63,073,505...63,729,215
Ensembl chr14:58,861,144...59,512,656 		JBrowse link
G Ppp4r3a protein phosphatase 4, regulatory subunit 3A acts_upstream_of ISO
IEA		 (PMID:20876121)
GO_REF:0000107		 RGD
Ensembl		 PMID:20876121 GO_REF:0000107 NCBI chr 6:126,032,068...126,098,329
Ensembl chr 6:120,302,511...120,365,891 		JBrowse link
G Ppp4r3b protein phosphatase 4, regulatory subunit 3B acts_upstream_of ISO
IEA		 (PMID:20876121)
GO_REF:0000107		 RGD
Ensembl		 PMID:20876121 GO_REF:0000107 NCBI chr14:107,118,116...107,166,121
Ensembl chr14:102,917,443...103,068,192 		JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO
IEA		 (PMID:18466349)
(PMID:16034410)
GO_REF:0000107		 RGD
Ensembl		 PMID:16034410 PMID:18466349 GO_REF:0000107 NCBI chr 1:245,306,349...245,313,551
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
G Sds serine dehydratase involved_in TAS
IEA		 GO_REF:0000043
GO_REF:0000041		 UniProt
RGD		 PMID:11906824 GO_REF:0000041 GO_REF:0000043, RGD:633956 NCBI chr12:41,743,796...41,751,108
Ensembl chr12:36,083,229...36,088,203 		JBrowse link
G Serpina12 serpin family A member 12 acts_upstream_of ISO
IEA		 (PMID:22837305)
GO_REF:0000107		 RGD
Ensembl		 PMID:22837305 GO_REF:0000107 NCBI chr 6:128,717,334...128,732,049
Ensembl chr 6:122,952,552...122,967,271 		JBrowse link
G Slc25a11 solute carrier family 25 member 11 involved_in IEA
ISO		 GO_REF:0000107
(PMID:35507647)		 Ensembl
RGD		 PMID:35507647 GO_REF:0000107 NCBI chr10:55,856,209...55,859,060
Ensembl chr10:55,357,597...55,360,410 		JBrowse link
G Slc25a13 solute carrier family 25 member 13 involved_in IEA
ISO		 GO_REF:0000107
MGI:3028639 (PMID:14701727)		 Ensembl
RGD		 PMID:14701727 GO_REF:0000107 NCBI chr 4:35,145,721...35,328,403
Ensembl chr 4:34,179,224...34,361,902 		JBrowse link
G Slc37a4 solute carrier family 37 member 4 involved_in ISO
IEA		 (PMID:28973635)
GO_REF:0000107		 RGD
Ensembl		 PMID:28973635 GO_REF:0000107 NCBI chr 8:53,619,952...53,626,110
Ensembl chr 8:44,723,339...44,729,301 		JBrowse link
G Slc39a14 solute carrier family 39 member 14 acts_upstream_of ISO
IEA		 (PMID:21445361)
GO_REF:0000107		 RGD
Ensembl		 PMID:21445361 GO_REF:0000107 NCBI chr15:51,786,517...51,833,260
Ensembl chr15:45,376,917...45,423,524 		JBrowse link
G Tpi1 triosephosphate isomerase 1 involved_in IEA
ISO
IBA		 GO_REF:0000041
GO_REF:0000043
(PMID:31891762)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:31891762 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 NCBI chr 4:159,301,558...159,305,088
Ensembl chr 4:157,615,386...157,619,541 		JBrowse link
G Tpi1l1 triosephosphate isomerase 1 like 1 involved_in IEA
IBA		 GO_REF:0000041
GO_REF:0000043
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 NCBI chr 8:31,923,596...31,931,244
Ensembl chr 8:23,647,764...23,655,504 		JBrowse link
G Tpi1l2 triosephosphate isomerase 1 like 2 involved_in IEA
IBA		 GO_REF:0000041
GO_REF:0000043
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 NCBI chr17:27,307,380...28,230,998
Ensembl chr17:27,101,431...27,102,809 		JBrowse link
G Wdr5 WD repeat domain 5 acts_upstream_of ISO MGI:1343094|MGI:95674 (PMID:24051374) RGD PMID:24051374 NCBI chr 3:31,233,048...31,254,730
Ensembl chr 3:10,837,025...10,856,671 		JBrowse link
hexose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chst15 carbohydrate sulfotransferase 15 involved_in ISO
IBA
IEA
ISS		 (PMID:11572857)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:11572857 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:196,458,978...196,540,088
Ensembl chr 1:187,028,970...187,107,707 		JBrowse link
L-ascorbic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1a1 aldo-keto reductase family 1 member A1 involved_in
acts_upstream_of_or_within		 IMP
IEA
ISO		 PMID:22820017
GO_REF:0000107
(PMID:15769935)
MGI:4239556 (PMID:20410296)		 Ensembl
RGD		 PMID:15769935 PMID:20410296 PMID:22820017 GO_REF:0000107, RGD:13825440 NCBI chr 5:135,329,605...135,367,037
Ensembl chr 5:130,092,732...130,113,674 		JBrowse link
G Akr1b1 aldo-keto reductase family 1 member B1 involved_in ISO MGI:5008171 (PMID:20410296) RGD PMID:20410296 NCBI chr 4:63,899,222...63,913,315
Ensembl chr 4:62,932,031...62,946,157 		JBrowse link
G Gsto1 glutathione S-transferase omega 1 IMP RGD PMID:9786866 RGD:70644 NCBI chr 1:256,662,377...256,672,515
Ensembl chr 1:246,721,221...246,731,468 		JBrowse link
G Gulo gulonolactone (L-) oxidase involved_in ISS
IEA		 GO_REF:0000024
GO_REF:0000043
GO_REF:0000107		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000043 GO_REF:0000107 NCBI chr15:44,381,226...44,403,314
Ensembl chr15:40,205,665...40,227,874 		JBrowse link
G Rgn regucalcin involved_in ISS
IEA
ISO
IBA		 GO_REF:0000024
GO_REF:0000043
MGI:2670511 (PMID:16585534), (PMID:23349732)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:16585534 PMID:23349732 GO_REF:0000024 GO_REF:0000033 GO_REF:0000043 NCBI chr  X:4,172,537...4,190,112
Ensembl chr  X:1,619,032...1,634,450 		JBrowse link
negative regulation of gluconeogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(PMID:11479628)		 UniProt
RGD		 PMID:11479628 GO_REF:0000024 NCBI chr11:91,226,524...91,240,244
Ensembl chr11:77,721,912...77,735,564 		JBrowse link
G C1qtnf12 C1q and TNF related 12 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:22275362)		 GO_Central
Ensembl
RGD		 PMID:22275362 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:171,833,854...171,838,229
Ensembl chr 5:166,551,628...166,556,003 		JBrowse link
G C1qtnf3 C1q and TNF related 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20952387)
GO_REF:0000107		 RGD
Ensembl		 PMID:20952387 GO_REF:0000107 NCBI chr 2:61,644,225...61,666,640
Ensembl chr 2:59,917,188...59,939,433 		JBrowse link
G Clk2 CDC-like kinase 2 involved_in ISO (PMID:20074525) RGD PMID:20074525 NCBI chr 2:176,868,423...176,880,412
Ensembl chr 2:174,570,653...174,588,985 		JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:28790135), (PMID:29937374)		 UniProt
RGD		 PMID:28790135 PMID:29937374 GO_REF:0000024 NCBI chr 7:20,417,526...20,481,791
Ensembl chr 7:18,529,823...18,594,091 		JBrowse link
G Ep300 E1A binding protein p300 involved_in ISO (PMID:30193097) RGD PMID:30193097 NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Erfe erythroferrone involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:99,404,512...99,412,383
Ensembl chr 9:91,956,977...91,964,846 		JBrowse link
G Gck glucokinase involved_in ISO
IEA
ISS		 (PMID:8878425)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:8878425 GO_REF:0000024 GO_REF:0000107 NCBI chr14:84,999,019...85,041,098
Ensembl chr14:80,785,060...80,826,995 		JBrowse link
G Il6 interleukin 6 IDA In liver RGD PMID:16308834 RGD:2306940 NCBI chr 4:5,889,999...5,894,575
Ensembl chr 4:5,213,394...5,219,178 		JBrowse link
G Ins2 insulin 2 involved_in ISO (PMID:8069456) RGD PMID:8069456 NCBI chr 1:207,272,738...207,421,998
Ensembl chr 1:197,843,281...197,864,775 		JBrowse link
G Kat2a lysine acetyltransferase 2A involved_in ISO
IEA		 (PMID:16753578), (PMID:23142079)
GO_REF:0000107		 RGD
Ensembl		 PMID:16753578 PMID:23142079 GO_REF:0000107 NCBI chr10:86,132,535...86,140,877
Ensembl chr10:85,632,216...85,640,166 		JBrowse link
G Lepr leptin receptor acts_upstream_of_or_within ISO
IEA		 MGI:1856009 (PMID:24051374)
GO_REF:0000107		 RGD
Ensembl		 PMID:24051374 GO_REF:0000107 NCBI chr 5:121,409,735...121,593,201
Ensembl chr 5:116,289,823...116,475,908 		JBrowse link
G Mst1 macrophage stimulating 1 involved_in ISO (PMID:19720831) RGD PMID:19720831 NCBI chr 8:117,646,485...117,652,016
Ensembl chr 8:108,768,839...108,773,416 		JBrowse link
G Mtcl2 microtubule crosslinking factor 2 involved_in ISO
IEA		 (PMID:20813965)
GO_REF:0000107		 RGD
Ensembl		 PMID:20813965 GO_REF:0000107 NCBI chr 3:166,089,141...166,161,043
Ensembl chr 3:145,675,443...145,740,871 		JBrowse link
G Mup4l1 major urinary protein 4 like 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:80,223,093...80,226,566
Ensembl chr 5:75,142,157...75,564,845 		JBrowse link
G Nr0b1 nuclear receptor subfamily 0, group B, member 1 involved_in ISO (PMID:19651776) RGD PMID:19651776 NCBI chr  X:54,707,658...54,711,786
Ensembl chr  X:50,756,886...50,761,011 		JBrowse link
G Obp2a odorant binding protein 2A acts_upstream_of_or_within ISO MGI:2137691 (PMID:21135134) RGD PMID:21135134 NCBI chr 3:28,904,024...28,907,391
Ensembl chr 3:8,505,990...8,509,269 		JBrowse link
G Pgp phosphoglycolate phosphatase involved_in IMP
IEA
ISO		 PMID:26755581
GO_REF:0000107
(PMID:26755581)		 Ensembl
RGD		 PMID:26755581 PMID:26755581 GO_REF:0000107, RGD:10679995 NCBI chr10:13,999,782...14,002,408
Ensembl chr10:13,494,291...13,497,858 		JBrowse link
G Serpina12 serpin family A member 12 acts_upstream_of_or_within ISO
IEA		 (PMID:22837305)
GO_REF:0000107		 RGD
Ensembl		 PMID:22837305 GO_REF:0000107 NCBI chr 6:128,717,334...128,732,049
Ensembl chr 6:122,952,552...122,967,271 		JBrowse link
G Sik1 salt-inducible kinase 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:16148943)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:16148943 GO_REF:0000024 GO_REF:0000107 NCBI chr20:9,947,104...9,958,729
Ensembl chr20:9,947,396...9,958,991 		JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (PMID:23142079), (PMID:25009184) RGD PMID:23142079 PMID:25009184 NCBI chr 7:8,733,056...8,738,543
Ensembl chr 7:8,082,364...8,098,914 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 IMP RGD PMID:21901280 RGD:152995490 NCBI chr 1:264,791,335...264,984,225
Ensembl chr 1:254,786,091...254,978,967 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:28655758)		 UniProt
Ensembl
RGD		 PMID:28655758 GO_REF:0000024 GO_REF:0000107 NCBI chr10:7,335,508...7,432,018
Ensembl chr10:6,828,795...6,925,355 		JBrowse link
pentose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G G6pd glucose-6-phosphate dehydrogenase involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:5643703)
GO_REF:0000107
MGI:2182739 (PMID:14757696), (PMID:15998684), (PMID:1953691), (PMID:7439685), (PMID:8491670), (PMID:9330624), (PMID:9539108), (PMID:9627357)		 RGD
Ensembl		 PMID:1953691 PMID:5643703 PMID:7439685 PMID:8491670 PMID:9330624 More... GO_REF:0000107 NCBI chr  X:157,352,364...157,372,144
Ensembl chr  X:152,201,098...152,220,801 		JBrowse link
G Pgd phosphogluconate dehydrogenase acts_upstream_of_or_within ISO
IEA		 (PMID:8491670)
GO_REF:0000107		 RGD
Ensembl		 PMID:8491670 GO_REF:0000107 NCBI chr 5:164,865,830...164,882,029
Ensembl chr 5:159,561,271...159,742,778 		JBrowse link
positive regulation of gluconeogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arpp19 cAMP-regulated phosphoprotein 19 involved_in ISO (PMID:9653196) RGD PMID:9653196 NCBI chr 8:84,660,166...84,683,012
Ensembl chr 8:75,779,523...75,802,452
Ensembl chr 8:75,779,523...75,802,452 		JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in ISO (PMID:29937374) RGD PMID:29937374 NCBI chr 7:20,417,526...20,481,791
Ensembl chr 7:18,529,823...18,594,091 		JBrowse link
G Cyp2j4 cytochrome P450, family 2, subfamily j, polypeptide 4 IMP RGD PMID:29656108 RGD:150520032 NCBI chr 5:116,295,691...116,323,219
Ensembl chr 5:111,178,703...111,244,794 		JBrowse link
G Ddb1 damage-specific DNA binding protein 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:28790135)		 UniProt
RGD		 PMID:28790135 GO_REF:0000024 NCBI chr 1:216,677,810...216,703,605
Ensembl chr 1:207,252,890...207,278,676 		JBrowse link
G Dgat2 diacylglycerol O-acyltransferase 2 IMP RGD PMID:17526931 RGD:10400884 NCBI chr 1:162,866,237...162,896,655
Ensembl chr 1:153,454,080...153,484,428 		JBrowse link
G Foxo1 forkhead box O1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:12783775)
(PMID:17024043), (PMID:25009184)		 UniProt
Ensembl
RGD		 PMID:12783775 PMID:17024043 PMID:25009184 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:138,462,974...138,541,420
Ensembl chr 2:136,312,168...136,387,790 		JBrowse link
G Gcg glucagon acts_upstream_of_or_within ISO
IEA		 (PMID:24051374)
GO_REF:0000107		 RGD
Ensembl		 PMID:24051374 GO_REF:0000107 NCBI chr 3:67,522,489...67,531,533
Ensembl chr 3:47,113,914...47,122,929 		JBrowse link
G Gpt glutamic--pyruvic transaminase IDA RGD PMID:25865565 RGD:11342811 NCBI chr 7:110,295,599...110,300,134
Ensembl chr 7:108,416,642...108,419,494 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha IMP RGD PMID:24177414 RGD:10445837 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha involved_in IMP
IDA		 PMID:19651776 RGD
BHF-UCL		 PMID:16893891 PMID:19651776 PMID:24177414 RGD:1624992, RGD:8553501, RGD:10445837 NCBI chr 3:172,606,220...172,667,758
Ensembl chr 3:152,186,787...152,248,320 		JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO
IEA		 MGI:95674 (PMID:24051374)
GO_REF:0000107		 RGD
Ensembl		 PMID:24051374 GO_REF:0000107 NCBI chr10:86,132,535...86,140,877
Ensembl chr10:85,632,216...85,640,166 		JBrowse link
G Kat2b lysine acetyltransferase 2B acts_upstream_of_or_within ISO
IEA		 MGI:2155884|MGI:95674 (PMID:24051374)
GO_REF:0000107		 RGD
Ensembl		 PMID:24051374 GO_REF:0000107 NCBI chr 9:6,799,101...6,903,616
Ensembl chr 9:6,562,288...6,667,064 		JBrowse link
G Nnmt nicotinamide N-methyltransferase involved_in ISO (PMID:26168293) RGD PMID:26168293 NCBI chr 8:57,820,156...57,851,301
Ensembl chr 8:48,933,598...48,946,655 		JBrowse link
G Oprm1 opioid receptor, mu 1 IMP RGD PMID:34270714 RGD:401831046 NCBI chr 1:45,565,371...45,818,722
Ensembl chr 1:43,160,057...43,413,409 		JBrowse link
G Ppara peroxisome proliferator activated receptor alpha acts_upstream_of_or_within ISO
IEA		 MGI:1857774 (PMID:15232616)
GO_REF:0000107		 RGD
Ensembl		 PMID:15232616 GO_REF:0000107 NCBI chr 7:118,712,261...118,780,723
Ensembl chr 7:116,832,756...116,895,346 		JBrowse link
G Ppargc1a PPARG coactivator 1 alpha involved_in ISO (PMID:19651776) RGD PMID:19651776 NCBI chr14:63,073,505...63,729,215
Ensembl chr14:58,861,144...59,512,656 		JBrowse link
G Ppp4r3a protein phosphatase 4, regulatory subunit 3A acts_upstream_of_or_within ISO
IEA		 (PMID:20876121)
GO_REF:0000107		 RGD
Ensembl		 PMID:20876121 GO_REF:0000107 NCBI chr 6:126,032,068...126,098,329
Ensembl chr 6:120,302,511...120,365,891 		JBrowse link
G Ppp4r3b protein phosphatase 4, regulatory subunit 3B acts_upstream_of_or_within ISO
IEA		 (PMID:20876121)
GO_REF:0000107		 RGD
Ensembl		 PMID:20876121 GO_REF:0000107 NCBI chr14:107,118,116...107,166,121
Ensembl chr14:102,917,443...103,068,192 		JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in NAS PMID:11903059 UniProt PMID:11903059 RGD:8554594 NCBI chr 2:55,967,766...56,003,450
Ensembl chr 2:54,240,137...54,275,978 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in IEA
ISO		 GO_REF:0000107
(PMID:23292513)		 Ensembl
RGD		 PMID:23292513 GO_REF:0000107 NCBI chr19:41,059,843...41,083,189
Ensembl chr19:24,155,090...24,178,430 		JBrowse link
G Prkag1 protein kinase AMP-activated non-catalytic subunit gamma 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:131,842,058...131,859,484
Ensembl chr 7:129,963,105...129,980,561 		JBrowse link
G Prkag2 protein kinase AMP-activated non-catalytic subunit gamma 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:10,744,695...10,985,939
Ensembl chr 4:10,010,890...10,252,142 		JBrowse link
G Prkag3 protein kinase AMP-activated non-catalytic subunit gamma 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:83,744,385...83,753,629
Ensembl chr 9:76,295,715...76,304,959 		JBrowse link
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:20484139)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:20484139 GO_REF:0000024 GO_REF:0000107 NCBI chr18:63,498,890...63,564,571
Ensembl chr18:61,229,014...61,294,627 		JBrowse link
G Sirt1 sirtuin 1 involved_in IMP
IEA
ISO		 GO_REF:0000107
(PMID:26168293)
(PMID:15692560), (PMID:23142079), (PMID:30193097)		 Ensembl
RGD		 PMID:15692560 PMID:23142079 PMID:26168293 PMID:30193097 PMID:21212096 GO_REF:0000107, RGD:9585757 NCBI chr20:25,305,953...25,328,000
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Sirt7 sirtuin 7 involved_in ISS
ISO		 GO_REF:0000024
(PMID:28655758)		 UniProt
RGD		 PMID:28655758 GO_REF:0000024 NCBI chr10:106,394,802...106,401,627
Ensembl chr10:105,896,476...105,903,172 		JBrowse link
G Stk11 serine/threonine kinase 11 IMP RGD PMID:17083919 RGD:2291956 NCBI chr 7:10,225,204...10,241,965
Ensembl chr 7:9,575,269...9,591,315 		JBrowse link
G Supt20h SPT20 homolog, SAGA complex component acts_upstream_of_or_within ISO MGI:95674 (PMID:24051374) RGD PMID:24051374 NCBI chr 2:141,047,479...141,080,656
Ensembl chr 2:138,897,416...138,930,495 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO MGI:5430317 (PMID:23260145) RGD PMID:23260145 NCBI chr 1:264,791,335...264,984,225
Ensembl chr 1:254,786,091...254,978,967 		JBrowse link
G Wdr5 WD repeat domain 5 acts_upstream_of_or_within ISO MGI:1343094|MGI:95674 (PMID:24051374) RGD PMID:24051374 NCBI chr 3:31,233,048...31,254,730
Ensembl chr 3:10,837,025...10,856,671 		JBrowse link
regulation of gluconeogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-CoA dehydrogenase medium chain involved_in IEA
ISO		 GO_REF:0000107
(PMID:18459129)		 Ensembl
RGD		 PMID:18459129 GO_REF:0000107 NCBI chr 2:245,518,693...245,542,864
Ensembl chr 2:242,858,865...242,883,147 		JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in ISO (PMID:29937374) RGD PMID:29937374 NCBI chr 7:20,417,526...20,481,791
Ensembl chr 7:18,529,823...18,594,091 		JBrowse link
G Dgkq diacylglycerol kinase, theta involved_in ISO (PMID:23767959) RGD PMID:23767959 NCBI chr14:1,203,380...1,217,536
Ensembl chr14:1,059,170...1,073,131 		JBrowse link
G Fbp1 fructose-bisphosphatase 1 involved_in ISO
IEA
ISS		 (PMID:7558035)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:7558035 GO_REF:0000024 GO_REF:0000107 NCBI chr17:2,212,941...2,235,749
Ensembl chr17:2,208,031...2,230,071 		JBrowse link
G Foxo1 forkhead box O1 acts_upstream_of_or_within ISO
IEA		 (PMID:18497885)
GO_REF:0000107		 RGD
Ensembl		 PMID:18497885 GO_REF:0000107 NCBI chr 2:138,462,974...138,541,420
Ensembl chr 2:136,312,168...136,387,790 		JBrowse link
G Gnmt glycine N-methyltransferase involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:3842652 (PMID:17937387)		 GO_Central
RGD		 PMID:17937387 GO_REF:0000033 NCBI chr 9:21,752,235...21,756,368
Ensembl chr 9:14,254,675...14,258,434 		JBrowse link
G Insr insulin receptor IEP RGD PMID:29896241 RGD:14700925 NCBI chr12:5,991,135...6,129,275
Ensembl chr12:1,197,100...1,330,883 		JBrowse link
G Lep leptin acts_upstream_of_or_within ISO
IEA		 MGI:1856424 (PMID:16513828)
GO_REF:0000107		 RGD
Ensembl		 PMID:16513828 GO_REF:0000107 NCBI chr 4:58,626,529...58,640,663
Ensembl chr 4:57,661,131...57,675,262 		JBrowse link
G Nln neurolysin acts_upstream_of_or_within ISO MGI:4125183 (PMID:24719317) RGD PMID:24719317 NCBI chr 2:36,867,436...36,966,749
Ensembl chr 2:35,134,145...35,232,914 		JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857745 (PMID:7628695)
GO_REF:0000107		 RGD
Ensembl		 PMID:7628695 GO_REF:0000107 NCBI chr18:31,522,783...31,644,508
Ensembl chr18:31,271,681...31,393,375 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:23395176)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:23395176 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:70,811,317...70,856,123
Ensembl chr  X:66,771,349...66,816,146 		JBrowse link
G Pdk2 pyruvate dehydrogenase kinase 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:22360721)		 UniProt
RGD		 PMID:22360721 GO_REF:0000024 NCBI chr10:80,469,388...80,483,988
Ensembl chr10:79,972,556...79,987,085 		JBrowse link
G Ranbp2 RAN binding protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:3693886 (PMID:17069463)
GO_REF:0000107		 RGD
Ensembl		 PMID:17069463 GO_REF:0000107 NCBI chr20:26,984,520...27,036,573
Ensembl chr20:26,442,217...26,493,481 		JBrowse link
G Sesn2 sestrin 2 acts_upstream_of_or_within ISO
IEA		 MGI:3587950 (PMID:22958918)
GO_REF:0000107		 RGD
Ensembl		 PMID:22958918 GO_REF:0000107 NCBI chr 5:149,986,304...150,005,255
Ensembl chr 5:144,701,530...144,721,260 		JBrowse link
G Slc35b4 solute carrier family 35 member B4 acts_upstream_of_or_within ISO
IEA		 (PMID:21507882)
GO_REF:0000107		 RGD
Ensembl		 PMID:21507882 GO_REF:0000107 NCBI chr 4:63,744,188...63,766,200
Ensembl chr 4:62,776,993...62,799,003 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO MGI:4431951 (PMID:23028378) RGD PMID:23028378 NCBI chr 1:264,791,335...264,984,225
Ensembl chr 1:254,786,091...254,978,967 		JBrowse link
G Zfp692 zinc finger protein 692 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21910974)		 UniProt
Ensembl
RGD		 PMID:21910974 GO_REF:0000024 GO_REF:0000107 NCBI chr10:42,988,946...42,997,009
Ensembl chr10:42,488,588...42,496,018 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    cellular process 19557
      metabolic process 12206
        biosynthetic process 8676
          small molecule biosynthetic process 670
            monosaccharide biosynthetic process 109
              1,5-anhydro-D-fructose biosynthetic process 0
              2-dehydro-3-deoxy-D-gluconic acid biosynthetic process 0
              D-galacturonate biosynthetic process 0
              L-ascorbic acid biosynthetic process + 5
              hexose biosynthetic process + 103
              keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 0
              pentose biosynthetic process + 2
              tetrose biosynthetic process + 0
Path 2
Term Annotations click to browse term
  biological_process 20567
    cellular process 19557
      metabolic process 12206
        primary metabolic process 10763
          carbohydrate metabolic process 650
            monosaccharide metabolic process 301
              monosaccharide biosynthetic process 109
                1,5-anhydro-D-fructose biosynthetic process 0
                2-dehydro-3-deoxy-D-gluconic acid biosynthetic process 0
                D-galacturonate biosynthetic process 0
                L-ascorbic acid biosynthetic process + 5
                hexose biosynthetic process + 103
                keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 0
                pentose biosynthetic process + 2
                tetrose biosynthetic process + 0
paths to the root