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ONTOLOGY REPORT - ANNOTATIONS

Term:monosaccharide biosynthetic process
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Accession:GO:0046364 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of monosaccharides, polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms.
Synonyms:exact_synonym: monosaccharide anabolism;   monosaccharide biosynthesis;   monosaccharide formation;   monosaccharide synthesis


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dermatan sulfate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chst12 carbohydrate sulfotransferase 12 involved_in ISO (PMID:10781601) RGD PMID:10781601 NCBI chr12:14,110,631...14,129,099
Ensembl chr12:14,110,393...14,129,057 		JBrowse link
G Chst14 carbohydrate sulfotransferase 14 acts_upstream_of_or_within ISO (PMID:11470797) RGD PMID:11470797 NCBI chr 3:105,916,481...105,918,538
Ensembl chr 3:105,916,466...105,918,548 		JBrowse link
G Dse dermatan sulfate epimerase involved_in ISO (PMID:16505484) RGD PMID:16505484 NCBI chr20:26,118,194...26,196,889
Ensembl chr20:26,118,196...26,196,992 		JBrowse link
fructose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b1 aldo-keto reductase family 1 member B1 involved_in ISO (MGI:3763009|PMID:17727625), (MGI:6151785|PMID:29238976) RGD PMID:17727625 PMID:29238976 MGI:3763009 MGI:6151785 NCBI chr 4:62,932,033...62,946,126
Ensembl chr 4:62,932,031...62,946,157 		JBrowse link
G Sord sorbitol dehydrogenase involved_in ISO
IEA		 (PMID:3365415), (PMID:6870831), (PMID:8487505)
MGI:3616090 (MGI:3619072|PMID:9604875), (MGI:3836088|PMID:18799757)
GO_REF:0000107		 RGD
Ensembl		 PMID:3365415 PMID:6870831 PMID:8487505 PMID:9604875 PMID:18799757 GO_REF:0000107 MGI:3619072 MGI:3836088 NCBI chr 3:109,184,697...109,216,133
Ensembl chr 3:109,184,676...109,216,133 		JBrowse link
gluconeogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldob aldolase, fructose-bisphosphate B involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 5:63,889,045...63,902,086
Ensembl chr 5:63,889,046...63,902,116 		JBrowse link
G Aldoc aldolase, fructose-bisphosphate C involved_in ISO
IEA		 (MGI:6874586|PMID:24958256)
GO_REF:0000107		 RGD
Ensembl		 PMID:24958256 GO_REF:0000107 MGI:6874586 NCBI chr10:63,217,477...63,221,066
Ensembl chr10:63,217,451...63,221,066 		JBrowse link
G Atf3 activating transcription factor 3 acts_upstream_of_or_within ISO (MGI:2180255|PMID:11916968) RGD PMID:11916968 MGI:2180255 NCBI chr13:102,751,278...102,800,520
Ensembl chr13:102,751,321...102,764,631 		JBrowse link
G Atf4 activating transcription factor 4 acts_upstream_of_or_within ISO (MGI:2180255|PMID:11916968) RGD PMID:11916968 MGI:2180255 NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446 		JBrowse link
G C1qtnf12 C1q and TNF related 12 acts_upstream_of ISO (MGI:5317500|PMID:22275362) RGD PMID:22275362 MGI:5317500 NCBI chr 5:166,551,628...166,556,003
Ensembl chr 5:166,551,628...166,556,003 		JBrowse link
G Crtc2 CREB regulated transcription coactivator 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:3606826|PMID:16148943)		 UniProt
Ensembl
RGD		 PMID:16148943 GO_REF:0000024 GO_REF:0000107 MGI:3606826 NCBI chr 2:175,709,603...175,719,768
Ensembl chr 2:175,709,644...175,719,763 		JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5567906|PMID:20852621)		 UniProt
RGD		 PMID:20852621 GO_REF:0000024 MGI:5567906 NCBI chr 7:18,529,823...18,594,092
Ensembl chr 7:18,529,823...18,594,091 		JBrowse link
G Eno1 enolase 1 involved_in ISO (MGI:6304881|PMID:30679508) RGD PMID:30679508 MGI:6304881 NCBI chr 5:160,719,951...160,731,337
Ensembl chr 5:160,719,951...160,731,336 		JBrowse link
G Eno2 enolase 2 IDA RGD PMID:15720133 RGD:2302795 NCBI chr 4:157,572,085...157,580,971
Ensembl chr 4:157,572,088...157,580,980 		JBrowse link
G Fbp1 fructose-bisphosphatase 1 involved_in IDA
IBA
ISO
IEA		 PMID:21873635
(MGI:6278252|PMID:30150719)
(PMID:19259699), (PMID:20096900)
GO_REF:0000041		 RGD
UniProt		 PMID:19259699 PMID:20096900 PMID:30150719 PMID:4353083 PMID:21873635 More... GO_REF:0000041 MGI:6278252, RGD:2302851, RGD:13792537, RGD:2302970 NCBI chr17:2,207,271...2,230,076
Ensembl chr17:2,208,031...2,230,071 		JBrowse link
G Fbp2 fructose-bisphosphatase 2 involved_in IDA
IBA
IEA		 PMID:21873635
GO_REF:0000041		 UniProt
RGD		 PMID:4353083 PMID:21873635 PMID:11440903 GO_REF:0000041, RGD:2302851, RGD:13792537, RGD:2302970 NCBI chr17:2,236,088...2,253,702
Ensembl chr17:2,236,336...2,253,698 		JBrowse link
G G6pc1 glucose-6-phosphatase catalytic subunit 1 involved_in TAS
IBA
ISO
IEA
IDA		 PMID:21873635
(MGI:6879400|PMID:33359667)
GO_REF:0000041
(PMID:8211187)		 RGD
UniProt		 PMID:8211187 PMID:33359667 PMID:8865366 PMID:21873635 PMID:11440903 More... GO_REF:0000041 MGI:6879400, RGD:728661, RGD:13792537, RGD:2302970, RGD:2302851, RGD:2302850 NCBI chr10:86,307,400...86,318,766
Ensembl chr10:86,257,668...86,333,804 		JBrowse link
G G6pc3 glucose 6 phosphatase catalytic subunit 3 involved_in IDA
IBA
ISO
IEA		 PMID:21873635
(MGI:3576961|PMID:15661744)
GO_REF:0000041		 RGD
UniProt		 PMID:15661744 PMID:4303362 PMID:21873635 PMID:11440903 PMID:4353083 GO_REF:0000041 MGI:3576961, RGD:2302850, RGD:13792537, RGD:2302970, RGD:2302851 NCBI chr10:87,146,987...87,151,223
Ensembl chr10:87,146,901...87,151,221 		JBrowse link
G Gapdh glyceraldehyde-3-phosphate dehydrogenase involved_in IDA
ISO
IMP		 (MGI:5921614|PMID:28258188) RGD PMID:28258188 PMID:15720133 PMID:28258188 MGI:5921614, RGD:2302795, RGD:13792662 NCBI chr 4:157,962,312...157,967,158
Ensembl chr 4:157,962,343...157,966,235 		JBrowse link
G Gcg glucagon acts_upstream_of
involved_in		 ISO
IEA		 (MGI:5529403|PMID:24051374)
GO_REF:0000107		 RGD
Ensembl		 PMID:24051374 GO_REF:0000107 MGI:5529403 NCBI chr 3:47,113,914...47,122,958
Ensembl chr 3:47,113,914...47,122,929 		JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 involved_in ISO
IEA		 (MGI:3722000|PMID:17545671)
GO_REF:0000107		 RGD
Ensembl		 PMID:17545671 GO_REF:0000107 MGI:3722000 NCBI chr 1:242,357,293...242,381,535
Ensembl chr 1:242,357,306...242,380,633 		JBrowse link
G Gpd1 glycerol-3-phosphate dehydrogenase 1 acts_upstream_of_or_within ISO (MGI:2386349|PMID:12093800) RGD PMID:12093800 MGI:2386349 NCBI chr 7:130,842,526...130,851,530
Ensembl chr 7:130,844,138...130,851,529 		JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 acts_upstream_of_or_within ISO MGI:2387347 (MGI:2386349|PMID:12093800) RGD PMID:12093800 MGI:2386349 NCBI chr 3:41,800,552...41,937,729
Ensembl chr 3:41,801,930...41,936,901 		JBrowse link
G Gpi glucose-6-phosphate isomerase involved_in ISO
IEA
IBA		 (MGI:6874583|PMID:31891762)
GO_REF:0000043
PMID:21873635		 RGD
UniProt		 PMID:31891762 PMID:21873635 GO_REF:0000043 MGI:6874583, RGD:13792537 NCBI chr 1:86,828,211...86,856,077
Ensembl chr 1:86,828,216...86,856,086 		JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of ISO MGI:95674 (MGI:5529403|PMID:24051374) RGD PMID:24051374 MGI:5529403 NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166 		JBrowse link
G Kat2b lysine acetyltransferase 2B acts_upstream_of ISO MGI:2155884|MGI:95674 (MGI:5529403|PMID:24051374) RGD PMID:24051374 MGI:5529403 NCBI chr 9:6,562,525...6,667,064
Ensembl chr 9:6,562,288...6,667,064 		JBrowse link
G Lepr leptin receptor acts_upstream_of
involved_in		 ISO
IEA		 MGI:1856009 (MGI:5529403|PMID:24051374)
GO_REF:0000107		 RGD
Ensembl		 PMID:24051374 GO_REF:0000107 MGI:5529403 NCBI chr 5:116,294,409...116,477,904
Ensembl chr 5:116,289,823...116,475,908 		JBrowse link
G Mdh2 malate dehydrogenase 2 involved_in ISO (MGI:2651734|PMID:12581790) RGD PMID:12581790 MGI:2651734 NCBI chr12:20,894,269...20,907,225
Ensembl chr12:20,894,262...20,907,271 		JBrowse link
G Pc pyruvate carboxylase involved_in IDA
ISO
IBA
IEA		 MGI:2449284|MGI:6382162 (MGI:1888424|PMID:10938127), (MGI:5563696|PMID:23423574), (MGI:6313648|PMID:31006591)
PMID:21873635
GO_REF:0000041		 RGD
UniProt		 PMID:10938127 PMID:23423574 PMID:31006591 PMID:4353083 PMID:21873635 More... GO_REF:0000041 MGI:1888424 MGI:5563696 MGI:6313648, RGD:2302851, RGD:13792537, RGD:2302971 NCBI chr 1:201,799,374...201,898,412
Ensembl chr 1:201,804,267...201,898,380 		JBrowse link
G Pck1 phosphoenolpyruvate carboxykinase 1 involved_in
acts_upstream_of_or_within		 TAS
ISO
IBA
IEA
IDA		 (PMID:26971250), (PMID:30193097)
PMID:21873635
MGI:2449283|MGI:2449284 (MGI:1888424|PMID:10938127), (MGI:3522420|PMID:15347677), (MGI:4359567|PMID:19643083), (MGI:6119963|PMID:29230018), (MGI:6753666|PMID:34156032)
(MGI:2180255|PMID:11916968)
GO_REF:0000041
PMID:4186849		 RGD
UniProt		 PMID:10938127 PMID:11916968 PMID:15347677 PMID:19643083 PMID:26971250 More... GO_REF:0000041 MGI:1888424 MGI:2180255 MGI:3522420 MGI:4359567 MGI:6119963 MGI:6753666, RGD:625518, RGD:13792537, RGD:8553288, RGD:2302971, RGD:2302970, RGD:2302851, RGD:2302850 NCBI chr 3:161,930,256...161,936,205
Ensembl chr 3:161,930,256...161,936,191 		JBrowse link
G Pck2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) involved_in IDA
IBA
ISO
IEA		 PMID:21873635
MGI:97501 (MGI:6832513|PMID:23466304)
GO_REF:0000041		 RGD
UniProt		 PMID:23466304 PMID:4353083 PMID:21873635 PMID:6049928 PMID:11440903 GO_REF:0000041 MGI:6832513, RGD:2302851, RGD:13792537, RGD:2302971, RGD:2302970 NCBI chr15:29,027,891...29,036,729
Ensembl chr15:29,027,894...29,037,283 		JBrowse link
G Per2 period circadian regulator 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5319572|PMID:22504074)		 UniProt
RGD		 PMID:22504074 GO_REF:0000024 MGI:5319572 NCBI chr 9:92,007,289...92,049,551
Ensembl chr 9:92,007,296...92,049,459 		JBrowse link
G Pgam1 phosphoglycerate mutase 1 involved_in ISO (MGI:6874586|PMID:24958256) RGD PMID:24958256 MGI:6874586 NCBI chr 1:240,723,832...240,731,443
Ensembl chr 1:240,723,920...240,738,452 		JBrowse link
G Pgam2 phosphoglycerate mutase 2 IDA RGD PMID:15720133 RGD:2302795 NCBI chr14:80,681,796...80,683,907
Ensembl chr14:80,681,776...80,683,940 		JBrowse link
G Pgk1 phosphoglycerate kinase 1 involved_in IDA
IBA
ISO
IMP		 PMID:21873635
MGI:106918 (MGI:4359567|PMID:19643083)		 RGD PMID:19643083 PMID:15720133 PMID:21873635 PMID:3091090 MGI:4359567, RGD:2302795, RGD:13792537, RGD:2302860 NCBI chr  X:71,271,454...71,287,429
Ensembl chr  X:71,271,440...71,287,418 		JBrowse link
G Pgk1l1 phosphoglycerate kinase 1 like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:42,754,605...42,755,929
Ensembl chr 2:42,754,639...42,755,856 		JBrowse link
G Pgk2 phosphoglycerate kinase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:20,480,367...20,481,933
Ensembl chr 9:20,480,203...20,571,481 		JBrowse link
G Ppara peroxisome proliferator activated receptor alpha acts_upstream_of ISO MGI:1857774 (MGI:3046612|PMID:15232616) RGD PMID:15232616 MGI:3046612 NCBI chr 7:116,832,405...116,900,878
Ensembl chr 7:116,832,756...116,895,346 		JBrowse link
G Ppargc1a PPARG coactivator 1 alpha involved_in IEP
IEA
ISO
ISS		 GO_REF:0000107
(MGI:3579714|PMID:15716268)
(PMID:16753578), (PMID:23142079)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:15716268 PMID:16753578 PMID:23142079 PMID:21212096 GO_REF:0000024 GO_REF:0000107 MGI:3579714, RGD:9585757 NCBI chr14:58,860,752...59,516,525
Ensembl chr14:58,861,144...59,512,656 		JBrowse link
G Ppp4r3a protein phosphatase 4, regulatory subunit 3A acts_upstream_of ISO (MGI:4837269|PMID:20876121) RGD PMID:20876121 MGI:4837269 NCBI chr 6:120,302,508...120,365,907
Ensembl chr 6:120,302,511...120,365,891 		JBrowse link
G Ppp4r3b protein phosphatase 4, regulatory subunit 3B acts_upstream_of ISO (MGI:4837269|PMID:20876121) RGD PMID:20876121 MGI:4837269 NCBI chr14:102,917,043...102,965,210
Ensembl chr14:102,917,443...103,068,192 		JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO
IEA		 (PMID:18466349)
GO_REF:0000107
(MGI:3584329|PMID:16034410)		 RGD
Ensembl		 PMID:16034410 PMID:18466349 GO_REF:0000107 MGI:3584329 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
G Sds serine dehydratase involved_in TAS
IEA		 GO_REF:0000041 UniProt
RGD		 PMID:11906824 GO_REF:0000041, RGD:633956 NCBI chr12:36,083,226...36,090,540
Ensembl chr12:36,083,229...36,088,203 		JBrowse link
G Serpina12 serpin family A member 12 acts_upstream_of
involved_in		 ISO
IEA		 (MGI:5563627|PMID:22837305)
GO_REF:0000107		 RGD
Ensembl		 PMID:22837305 GO_REF:0000107 MGI:5563627 NCBI chr 6:122,952,552...122,967,271
Ensembl chr 6:122,952,552...122,967,271 		JBrowse link
G Slc25a11 solute carrier family 25 member 11 involved_in ISO
IEA		 (MGI:7278220|PMID:35507647)
GO_REF:0000107		 RGD
Ensembl		 PMID:35507647 GO_REF:0000107 MGI:7278220 NCBI chr10:55,357,590...55,360,441
Ensembl chr10:55,357,597...55,360,410 		JBrowse link
G Slc25a13 solute carrier family 25 member 13 involved_in ISO
IEA		 MGI:3028639 (MGI:3027207|PMID:14701727)
GO_REF:0000107		 RGD
Ensembl		 PMID:14701727 GO_REF:0000107 MGI:3027207 NCBI chr 4:34,179,224...34,361,912
Ensembl chr 4:34,179,224...34,361,902 		JBrowse link
G Slc37a4 solute carrier family 37 member 4 involved_in ISO (MGI:5921762|PMID:28973635) RGD PMID:28973635 MGI:5921762 NCBI chr 8:44,723,216...44,729,301
Ensembl chr 8:44,723,339...44,729,301 		JBrowse link
G Slc39a14 solute carrier family 39 member 14 acts_upstream_of ISO (MGI:4950776|PMID:21445361) RGD PMID:21445361 MGI:4950776 NCBI chr15:45,376,806...45,423,549
Ensembl chr15:45,376,917...45,423,524 		JBrowse link
G Tpi1 triosephosphate isomerase 1 involved_in IEA
IBA
ISO		 GO_REF:0000041
PMID:21873635
(MGI:6874583|PMID:31891762)		 UniProt
RGD		 PMID:31891762 PMID:21873635 GO_REF:0000041 MGI:6874583, RGD:13792537 NCBI chr 4:157,615,283...157,618,813
Ensembl chr 4:157,615,386...157,619,541 		JBrowse link
G Tpi1l1 triosephosphate isomerase 1 like 1 involved_in IEA
IBA		 GO_REF:0000041
PMID:21873635		 UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr 8:23,647,760...23,654,967
Ensembl chr 8:23,647,764...23,655,504 		JBrowse link
G Tpi1l2 triosephosphate isomerase 1 like 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr17:27,101,431...27,102,823
Ensembl chr17:27,101,431...27,102,809 		JBrowse link
G Wdr5 WD repeat domain 5 acts_upstream_of
involved_in		 ISO
IEA		 MGI:1343094|MGI:95674 (MGI:5529403|PMID:24051374)
GO_REF:0000107		 RGD
Ensembl		 PMID:24051374 GO_REF:0000107 MGI:5529403 NCBI chr 3:10,836,964...10,856,682
Ensembl chr 3:10,837,025...10,856,671 		JBrowse link
hexose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chst15 carbohydrate sulfotransferase 15 involved_in ISO
IEA
ISS
IBA		 (PMID:11572857)
GO_REF:0000107
GO_REF:0000024
PMID:21873635		 RGD
Ensembl
UniProt		 PMID:11572857 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 1:187,028,860...187,107,908
Ensembl chr 1:187,028,970...187,107,707 		JBrowse link
L-ascorbic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1a1 aldo-keto reductase family 1 member A1 acts_upstream_of_or_within
involved_in		 ISO
IMP		 (MGI:3588122|PMID:15769935)
PMID:22820017
MGI:4239556 (MGI:4834110|PMID:20410296)		 RGD PMID:15769935 PMID:20410296 PMID:22820017 MGI:3588122 MGI:4834110, RGD:13825440 NCBI chr 5:130,092,945...130,130,277
Ensembl chr 5:130,092,732...130,113,674 		JBrowse link
G Akr1b1 aldo-keto reductase family 1 member B1 involved_in ISO MGI:5008171 (MGI:4834110|PMID:20410296) RGD PMID:20410296 MGI:4834110 NCBI chr 4:62,932,033...62,946,126
Ensembl chr 4:62,932,031...62,946,157 		JBrowse link
G Gsto1 glutathione S-transferase omega 1 IMP RGD PMID:9786866 RGD:70644 NCBI chr 1:246,721,089...246,731,228
Ensembl chr 1:246,721,221...246,731,468 		JBrowse link
G Gulo gulonolactone (L-) oxidase involved_in ISS
IEA		 GO_REF:0000024
GO_REF:0000107		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr15:40,205,677...40,227,766
Ensembl chr15:40,205,665...40,227,874 		JBrowse link
G Rgn regucalcin involved_in IBA
ISO
ISS		 PMID:21873635
MGI:2670511 (MGI:3623658|PMID:16585534), (MGI:5486063|PMID:23349732)
GO_REF:0000024		 RGD
UniProt		 PMID:16585534 PMID:23349732 PMID:21873635 GO_REF:0000024 MGI:3623658 MGI:5486063, RGD:13792537 NCBI chr  X:1,619,030...1,634,456
Ensembl chr  X:1,619,032...1,634,450 		JBrowse link
negative regulation of gluconeogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(MGI:3055866|PMID:11479628)		 UniProt
RGD		 PMID:11479628 GO_REF:0000024 MGI:3055866 NCBI chr11:77,721,912...77,735,644
Ensembl chr11:77,721,912...77,735,564 		JBrowse link
G C1qtnf12 C1q and TNF related 12 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
(MGI:5317500|PMID:22275362)		 RGD PMID:22275362 PMID:21873635 MGI:5317500, RGD:13792537 NCBI chr 5:166,551,628...166,556,003
Ensembl chr 5:166,551,628...166,556,003 		JBrowse link
G C1qtnf3 C1q and TNF related 3 acts_upstream_of_or_within
involved_in		 ISO (MGI:4868567|PMID:20952387)
(PMID:20952387)		 RGD PMID:20952387 MGI:4868567 NCBI chr 2:59,917,099...59,939,519
Ensembl chr 2:59,917,188...59,939,433 		JBrowse link
G Clk2 CDC-like kinase 2 involved_in ISO (MGI:4429735|PMID:20074525) RGD PMID:20074525 MGI:4429735 NCBI chr 2:174,570,614...174,582,645
Ensembl chr 2:174,570,653...174,588,985 		JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5914352|PMID:28790135), (MGI:6208175|PMID:29937374)		 UniProt
RGD		 PMID:28790135 PMID:29937374 GO_REF:0000024 MGI:5914352 MGI:6208175 NCBI chr 7:18,529,823...18,594,092
Ensembl chr 7:18,529,823...18,594,091 		JBrowse link
G Ep300 E1A binding protein p300 involved_in ISO (PMID:30193097) RGD PMID:30193097 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Erfe erythroferrone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:91,956,971...91,964,846
Ensembl chr 9:91,956,977...91,964,846 		JBrowse link
G Gck glucokinase involved_in ISO
IEA
ISS		 (PMID:8878425)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:8878425 GO_REF:0000024 GO_REF:0000107 NCBI chr14:80,785,060...80,829,842
Ensembl chr14:80,785,060...80,826,995 		JBrowse link
G Il6 interleukin 6 IDA In liver RGD PMID:16308834 RGD:2306940 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178 		JBrowse link
G Ins2 insulin 2 involved_in ISO (PMID:8069456) RGD PMID:8069456 NCBI chr 1:197,843,277...197,992,522
Ensembl chr 1:197,843,281...197,864,775 		JBrowse link
G Kat2a lysine acetyltransferase 2A involved_in ISO (PMID:16753578), (PMID:23142079) RGD PMID:16753578 PMID:23142079 NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166 		JBrowse link
G Lepr leptin receptor acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1856009 (MGI:5529403|PMID:24051374)
GO_REF:0000107		 RGD
Ensembl		 PMID:24051374 GO_REF:0000107 MGI:5529403 NCBI chr 5:116,294,409...116,477,904
Ensembl chr 5:116,289,823...116,475,908 		JBrowse link
G Mst1 macrophage stimulating 1 involved_in ISO (PMID:19720831) RGD PMID:19720831 NCBI chr 8:108,767,886...108,773,425
Ensembl chr 8:108,768,839...108,773,416 		JBrowse link
G Mtcl2 microtubule crosslinking factor 2 involved_in ISO (MGI:4837302|PMID:20813965) RGD PMID:20813965 MGI:4837302 NCBI chr 3:145,669,102...145,741,578
Ensembl chr 3:145,675,443...145,740,871 		JBrowse link
G Mup4l1 major urinary protein 4 like 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:75,221,340...75,224,797
Ensembl chr 5:75,142,157...75,564,845 		JBrowse link
G Obp2a odorant binding protein 2A acts_upstream_of_or_within ISO MGI:2137691 (MGI:4946468|PMID:21135134) RGD PMID:21135134 MGI:4946468 NCBI chr 3:8,505,963...8,509,269
Ensembl chr 3:8,505,990...8,509,269 		JBrowse link
G Pgp phosphoglycolate phosphatase involved_in IMP
IEA
ISO		 PMID:26755581
GO_REF:0000107
(PMID:26755581)		 Ensembl
RGD		 PMID:26755581 PMID:26755581 GO_REF:0000107, RGD:10679995 NCBI chr10:13,495,232...13,497,858
Ensembl chr10:13,494,291...13,497,858 		JBrowse link
G Serpina12 serpin family A member 12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:5563627|PMID:22837305)		 Ensembl
RGD		 PMID:22837305 GO_REF:0000107 MGI:5563627 NCBI chr 6:122,952,552...122,967,271
Ensembl chr 6:122,952,552...122,967,271 		JBrowse link
G Sik1 salt-inducible kinase 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:3606826|PMID:16148943)		 UniProt
Ensembl
RGD		 PMID:16148943 GO_REF:0000024 GO_REF:0000107 MGI:3606826 NCBI chr20:9,949,407...9,959,036
Ensembl chr20:9,947,396...9,958,991 		JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (PMID:23142079), (PMID:25009184) RGD PMID:23142079 PMID:25009184 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 IMP RGD PMID:21901280 RGD:152995490 NCBI chr 1:254,785,956...254,978,967
Ensembl chr 1:254,786,091...254,978,967 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:28655758)		 UniProt
Ensembl
RGD		 PMID:28655758 GO_REF:0000024 GO_REF:0000107 NCBI chr10:6,880,684...6,925,355
Ensembl chr10:6,828,795...6,925,355 		JBrowse link
pentose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G G6pd glucose-6-phosphate dehydrogenase involved_in
acts_upstream_of_or_within		 ISO (PMID:5643703)
MGI:2182739 (MGI:1097071|PMID:9330624), (MGI:1202104|PMID:9539108), (MGI:1261671|PMID:9627357), (MGI:3607389|PMID:14757696), (MGI:3694178|PMID:15998684), (MGI:49164|PMID:1953691), (MGI:54902|PMID:7439685), (MGI:61105|PMID:8491670)		 RGD PMID:1953691 PMID:5643703 PMID:7439685 PMID:8491670 PMID:9330624 More... MGI:1097071 MGI:1202104 MGI:1261671 MGI:3607389 MGI:3694178 MGI:49164 MGI:54902 MGI:61105 NCBI chr  X:152,201,081...152,220,863
Ensembl chr  X:152,201,098...152,220,801 		JBrowse link
G Pgd phosphogluconate dehydrogenase acts_upstream_of_or_within ISO (MGI:61105|PMID:8491670) RGD PMID:8491670 MGI:61105 NCBI chr 5:159,582,746...159,598,945
Ensembl chr 5:159,561,271...159,742,778 		JBrowse link
positive regulation of gluconeogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arpp19 cAMP-regulated phosphoprotein 19 involved_in ISO (PMID:9653196) RGD PMID:9653196 NCBI chr 8:75,779,640...75,802,474
Ensembl chr 8:75,779,523...75,802,452
Ensembl chr 8:75,779,523...75,802,452 		JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in ISO (MGI:6208175|PMID:29937374) RGD PMID:29937374 MGI:6208175 NCBI chr 7:18,529,823...18,594,092
Ensembl chr 7:18,529,823...18,594,091 		JBrowse link
G Cyp2j4 cytochrome P450, family 2, subfamily j, polypeptide 4 IMP RGD PMID:29656108 RGD:150520032 NCBI chr 5:111,179,981...111,207,490
Ensembl chr 5:111,178,703...111,244,794 		JBrowse link
G Ddb1 damage-specific DNA binding protein 1 involved_in IEA
ISO
ISS		 GO_REF:0000107
(MGI:5914352|PMID:28790135)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:28790135 GO_REF:0000024 GO_REF:0000107 MGI:5914352 NCBI chr 1:207,252,890...207,278,685
Ensembl chr 1:207,252,890...207,278,676 		JBrowse link
G Dgat2 diacylglycerol O-acyltransferase 2 IMP RGD PMID:17526931 RGD:10400884 NCBI chr 1:153,454,078...153,484,432
Ensembl chr 1:153,454,080...153,484,428 		JBrowse link
G Foxo1 forkhead box O1 acts_upstream_of_or_within
involved_in		 ISO
ISS		 (MGI:4454855|PMID:12783775)
(PMID:17024043), (PMID:25009184)
GO_REF:0000024		 RGD
UniProt		 PMID:12783775 PMID:17024043 PMID:25009184 GO_REF:0000024 MGI:4454855 NCBI chr 2:136,312,168...136,390,603
Ensembl chr 2:136,312,168...136,387,790 		JBrowse link
G Gcg glucagon acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5529403|PMID:24051374)
GO_REF:0000107		 RGD
Ensembl		 PMID:24051374 GO_REF:0000107 MGI:5529403 NCBI chr 3:47,113,914...47,122,958
Ensembl chr 3:47,113,914...47,122,929 		JBrowse link
G Gpt glutamic--pyruvic transaminase IDA RGD PMID:25865565 RGD:11342811 NCBI chr 7:108,416,646...108,419,495
Ensembl chr 7:108,416,642...108,419,494 		JBrowse link
G Gpt2 glutamic--pyruvic transaminase 2 IDA RGD PMID:25865565 RGD:11342811 NCBI chr19:21,526,800...21,561,314
Ensembl chr19:21,517,621...21,560,610 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha IMP RGD PMID:24177414 RGD:10445837 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha IMP RGD PMID:16893891 PMID:24177414 RGD:1624992, RGD:10445837 NCBI chr 3:152,186,787...152,248,320
Ensembl chr 3:152,186,787...152,248,320 		JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO MGI:95674 (MGI:5529403|PMID:24051374) RGD PMID:24051374 MGI:5529403 NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166 		JBrowse link
G Kat2b lysine acetyltransferase 2B acts_upstream_of_or_within ISO MGI:2155884|MGI:95674 (MGI:5529403|PMID:24051374) RGD PMID:24051374 MGI:5529403 NCBI chr 9:6,562,525...6,667,064
Ensembl chr 9:6,562,288...6,667,064 		JBrowse link
G Nnmt nicotinamide N-methyltransferase involved_in ISO (MGI:5708799|PMID:26168293) RGD PMID:26168293 MGI:5708799 NCBI chr 8:48,928,663...48,947,734
Ensembl chr 8:48,933,598...48,946,655 		JBrowse link
G Oprm1 opioid receptor, mu 1 IMP RGD PMID:34270714 RGD:401831046 NCBI chr 1:43,160,057...43,413,409
Ensembl chr 1:43,160,057...43,413,409 		JBrowse link
G Ppara peroxisome proliferator activated receptor alpha acts_upstream_of_or_within ISO MGI:1857774 (MGI:3046612|PMID:15232616) RGD PMID:15232616 MGI:3046612 NCBI chr 7:116,832,405...116,900,878
Ensembl chr 7:116,832,756...116,895,346 		JBrowse link
G Ppp4r3a protein phosphatase 4, regulatory subunit 3A acts_upstream_of_or_within ISO (MGI:4837269|PMID:20876121) RGD PMID:20876121 MGI:4837269 NCBI chr 6:120,302,508...120,365,907
Ensembl chr 6:120,302,511...120,365,891 		JBrowse link
G Ppp4r3b protein phosphatase 4, regulatory subunit 3B acts_upstream_of_or_within ISO (MGI:4837269|PMID:20876121) RGD PMID:20876121 MGI:4837269 NCBI chr14:102,917,043...102,965,210
Ensembl chr14:102,917,443...103,068,192 		JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in NAS PMID:11903059 UniProt PMID:11903059 RGD:8554594 NCBI chr 2:54,240,298...54,275,978
Ensembl chr 2:54,240,137...54,275,978 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in ISO
IEA		 (MGI:6209935|PMID:23292513)
GO_REF:0000107		 RGD
Ensembl		 PMID:23292513 GO_REF:0000107 MGI:6209935 NCBI chr19:24,155,081...24,178,430
Ensembl chr19:24,155,090...24,178,430 		JBrowse link
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:4941441|PMID:20484139)		 UniProt
Ensembl
RGD		 PMID:20484139 GO_REF:0000024 GO_REF:0000107 MGI:4941441 NCBI chr18:61,229,012...61,294,662
Ensembl chr18:61,229,014...61,294,627 		JBrowse link
G Sirt1 sirtuin 1 involved_in IMP
IEA
ISO		 GO_REF:0000107
(PMID:15692560), (PMID:23142079), (PMID:30193097)
(MGI:5708799|PMID:26168293)		 Ensembl
RGD		 PMID:15692560 PMID:23142079 PMID:26168293 PMID:30193097 PMID:21212096 GO_REF:0000107 MGI:5708799, RGD:9585757 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Sirt7 sirtuin 7 involved_in ISS
ISO		 GO_REF:0000024
(PMID:28655758)		 UniProt
RGD		 PMID:28655758 GO_REF:0000024 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172 		JBrowse link
G Stk11 serine/threonine kinase 11 IMP RGD PMID:17083919 RGD:2291956 NCBI chr 7:9,574,553...9,591,315
Ensembl chr 7:9,575,269...9,591,315 		JBrowse link
G Supt20h SPT20 homolog, SAGA complex component acts_upstream_of_or_within ISO MGI:95674 (MGI:5529403|PMID:24051374) RGD PMID:24051374 MGI:5529403 NCBI chr 2:138,897,316...138,930,493
Ensembl chr 2:138,897,416...138,930,495 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO MGI:5430317 (MGI:5468191|PMID:23260145) RGD PMID:23260145 MGI:5468191 NCBI chr 1:254,785,956...254,978,967
Ensembl chr 1:254,786,091...254,978,967 		JBrowse link
G Wdr5 WD repeat domain 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1343094|MGI:95674 (MGI:5529403|PMID:24051374)
GO_REF:0000107		 RGD
Ensembl		 PMID:24051374 GO_REF:0000107 MGI:5529403 NCBI chr 3:10,836,964...10,856,682
Ensembl chr 3:10,837,025...10,856,671 		JBrowse link
regulation of gluconeogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-CoA dehydrogenase medium chain involved_in ISO
IEA		 (MGI:4412440|PMID:18459129)
GO_REF:0000107		 RGD
Ensembl		 PMID:18459129 GO_REF:0000107 MGI:4412440 NCBI chr 2:242,858,865...242,883,036
Ensembl chr 2:242,858,865...242,883,147 		JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in ISO (MGI:6208175|PMID:29937374) RGD PMID:29937374 MGI:6208175 NCBI chr 7:18,529,823...18,594,092
Ensembl chr 7:18,529,823...18,594,091 		JBrowse link
G Dgkq diacylglycerol kinase, theta involved_in ISO (PMID:23767959) RGD PMID:23767959 NCBI chr14:1,059,125...1,073,131
Ensembl chr14:1,059,170...1,073,131 		JBrowse link
G Fbp1 fructose-bisphosphatase 1 involved_in ISO
IEA
ISS		 (PMID:7558035)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:7558035 GO_REF:0000024 GO_REF:0000107 NCBI chr17:2,207,271...2,230,076
Ensembl chr17:2,208,031...2,230,071 		JBrowse link
G Foxo1 forkhead box O1 acts_upstream_of_or_within ISO (MGI:3801555|PMID:18497885) RGD PMID:18497885 MGI:3801555 NCBI chr 2:136,312,168...136,390,603
Ensembl chr 2:136,312,168...136,387,790 		JBrowse link
G Gnmt glycine N-methyltransferase involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:3842652 (MGI:3842675|PMID:17937387)		 RGD PMID:17937387 PMID:21873635 MGI:3842675, RGD:13792537 NCBI chr 9:14,254,675...14,258,028
Ensembl chr 9:14,254,675...14,258,434 		JBrowse link
G Insr insulin receptor IEP RGD PMID:29896241 RGD:14700925 NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883 		JBrowse link
G Lep leptin acts_upstream_of_or_within ISO MGI:1856424 (MGI:3769319|PMID:16513828) RGD PMID:16513828 MGI:3769319 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262 		JBrowse link
G Nln neurolysin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4125183 (MGI:5588077|PMID:24719317)		 Ensembl
RGD		 PMID:24719317 GO_REF:0000107 MGI:5588077 NCBI chr 2:35,133,634...35,232,927
Ensembl chr 2:35,134,145...35,232,914 		JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1857745 (MGI:74913|PMID:7628695)
GO_REF:0000107		 RGD
Ensembl		 PMID:7628695 GO_REF:0000107 MGI:74913 NCBI chr18:31,271,681...31,393,320
Ensembl chr18:31,271,681...31,393,375 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA
ISO
ISS		 GO_REF:0000107
(MGI:5495336|PMID:23395176)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:23395176 GO_REF:0000024 GO_REF:0000107 MGI:5495336 NCBI chr  X:66,771,278...66,816,148
Ensembl chr  X:66,771,349...66,816,146 		JBrowse link
G Pdk2 pyruvate dehydrogenase kinase 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:5428826|PMID:22360721)		 UniProt
Ensembl
RGD		 PMID:22360721 GO_REF:0000024 GO_REF:0000107 MGI:5428826 NCBI chr10:79,972,550...79,987,074
Ensembl chr10:79,972,556...79,987,085 		JBrowse link
G Ranbp2 RAN binding protein 2 acts_upstream_of_or_within ISO MGI:3693886 (MGI:3693040|PMID:17069463) RGD PMID:17069463 MGI:3693040 NCBI chr20:26,442,156...26,493,481
Ensembl chr20:26,442,217...26,493,481 		JBrowse link
G Sesn2 sestrin 2 acts_upstream_of_or_within ISO MGI:3587950 (MGI:5444071|PMID:22958918) RGD PMID:22958918 MGI:5444071 NCBI chr 5:144,702,287...144,721,241
Ensembl chr 5:144,701,530...144,721,260 		JBrowse link
G Slc35b4 solute carrier family 35 member B4 acts_upstream_of_or_within ISO (MGI:5142157|PMID:21507882) RGD PMID:21507882 MGI:5142157 NCBI chr 4:62,776,993...62,799,013
Ensembl chr 4:62,776,993...62,799,003 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO MGI:4431951 (MGI:5448876|PMID:23028378) RGD PMID:23028378 MGI:5448876 NCBI chr 1:254,785,956...254,978,967
Ensembl chr 1:254,786,091...254,978,967 		JBrowse link
G Zfp692 zinc finger protein 692 involved_in ISS
ISO		 GO_REF:0000024
(PMID:21910974)		 UniProt
RGD		 PMID:21910974 GO_REF:0000024 NCBI chr10:42,484,576...42,496,573
Ensembl chr10:42,488,588...42,496,018 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19553
    metabolic process 11538
      biosynthetic process 8072
        small molecule biosynthetic process 613
          monosaccharide biosynthetic process 107
            1,5-anhydro-D-fructose biosynthetic process 0
            2-dehydro-3-deoxy-D-gluconic acid biosynthetic process 0
            D-galacturonate biosynthetic process 0
            L-ascorbic acid biosynthetic process + 5
            dermatan sulfate biosynthetic process 3
            hexose biosynthetic process + 98
            keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 0
            pentose biosynthetic process + 2
            tetrose biosynthetic process + 0
Path 2
Term Annotations click to browse term
  biological_process 19553
    metabolic process 11538
      primary metabolic process 9986
        carbohydrate metabolic process 617
          monosaccharide metabolic process 287
            monosaccharide biosynthetic process 107
              1,5-anhydro-D-fructose biosynthetic process 0
              2-dehydro-3-deoxy-D-gluconic acid biosynthetic process 0
              D-galacturonate biosynthetic process 0
              L-ascorbic acid biosynthetic process + 5
              dermatan sulfate biosynthetic process 3
              hexose biosynthetic process + 98
              keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 0
              pentose biosynthetic process + 2
              tetrose biosynthetic process + 0
paths to the root