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ONTOLOGY REPORT - ANNOTATIONS


Term:alcohol biosynthetic process
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Accession:GO:0046165 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom.
Synonyms:exact_synonym: alcohol anabolism;   alcohol biosynthesis;   alcohol formation;   alcohol synthesis


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aldosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1h calcium voltage-gated channel subunit alpha1 H IMP
IEA
ISO
PMID:19342457
GO_REF:0000107
(PMID:19342457)
Ensembl
RGD
PMID:19342457, PMID:19342457 GO_REF:0000107, RGD:4891166 NCBI chr10:14,730,932...14,789,201
Ensembl chr10:14,730,941...14,788,617
JBrowse link
G Cyp11b1 cytochrome P450, family 11, subfamily b, polypeptide 1 IMP
IBA
PMID:19342457
PMID:21873635
UniProt
GO_Central
PMID:19342457, PMID:21873635 RGD:4891166, RGD:13792537
G Cyp11b2 cytochrome P450, family 11, subfamily b, polypeptide 2 IDA
IBA
ISO
PMID:21873635
(PMID:19342457), (PMID:2256920)
RGD PMID:2256920, PMID:19342457, PMID:11832364, PMID:21873635 RGD:727991, RGD:13792537 NCBI chr 7:116,248,759...116,255,205
Ensembl chr 7:116,156,219...116,255,167
JBrowse link
G Cyp11b3 cytochrome P450, family 11, subfamily b, polypeptide 3 ISO (PMID:1741400), (PMID:19342457), (PMID:2256920), (PMID:23322723) RGD PMID:1741400, PMID:2256920, PMID:19342457, PMID:23322723 NCBI chr 7:116,155,928...116,161,781
Ensembl chr 7:116,156,219...116,255,167
JBrowse link
calcitriol biosynthetic process from calciol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp27a1 cytochrome P450, family 27, subfamily a, polypeptide 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:15465040)
Ensembl
RGD
PMID:15465040, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 9:81,968,285...81,998,213
Ensembl chr 9:81,968,332...81,998,169
JBrowse link
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 ISO
IBA
(PMID:15795327), (PMID:16549446), (PMID:17023519), (PMID:22862690), (PMID:9415400)
PMID:21873635
(MGI:MGI:3590419|PMID:15972816)
RGD PMID:9415400, PMID:15795327, PMID:15972816, PMID:16549446, PMID:17023519, PMID:22862690, PMID:21873635 MGI:MGI:3590419, RGD:13792537 NCBI chr 7:70,333,150...70,340,006
Ensembl chr 7:70,335,061...70,340,005
JBrowse link
G Cyp2r1 cytochrome P450, family 2, subfamily r, polypeptide 1 ISO (PMID:15465040), (PMID:18511070) RGD PMID:15465040, PMID:18511070 NCBI chr 1:184,060,521...184,106,604
Ensembl chr 1:184,093,920...184,106,200
JBrowse link
G LOC100909462 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
cholesterol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07021955.1 IEA GO_REF:0000041 UniProt GO_REF:0000041 Ensembl chr13:100,431,390...100,450,209 JBrowse link
G AABR07028137.1 IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr17:57,755,210...57,765,652 JBrowse link
G AABR07028157.1 IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr17:57,906,050...57,908,621 JBrowse link
G AABR07060293.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:66,336,143...66,336,901 JBrowse link
G Acat2 acetyl-CoA acetyltransferase 2 TAS PMID:10806397 UniProt PMID:10806397 RGD:2326086 NCBI chr 1:47,972,399...47,992,654
Ensembl chr 1:47,972,399...47,992,653
JBrowse link
G Apoa1 apolipoprotein A1 ISO
IBA
MGI:MGI:2180783 (MGI:MGI:2180727|PMID:8647961)
PMID:21873635
RGD PMID:8647961, PMID:21873635 MGI:MGI:2180727, RGD:13792537 NCBI chr 8:50,525,091...50,526,875
Ensembl chr 8:50,525,091...50,526,875
JBrowse link
G Apoa4 apolipoprotein A4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:50,536,983...50,539,371
Ensembl chr 8:50,537,009...50,539,376
JBrowse link
G Apoa5 apolipoprotein A5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:50,559,079...50,561,720
Ensembl chr 8:50,559,126...50,561,736
JBrowse link
G Ces1d carboxylesterase 1D ISO (PMID:11015575) RGD PMID:11015575 NCBI chr19:15,195,514...15,239,827
Ensembl chr19:15,033,108...15,239,821
JBrowse link
G Cftr CF transmembrane conductance regulator ISO
IEA
MGI:MGI:1856709 (MGI:MGI:3709533|PMID:17085523)
GO_REF:0000107
RGD
Ensembl
PMID:17085523 GO_REF:0000107, MGI:MGI:3709533 NCBI chr 4:42,693,263...42,860,679
Ensembl chr 4:42,692,836...42,860,676
JBrowse link
G Cyb5r3 cytochrome b5 reductase 3 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:124,024,003...124,041,564
Ensembl chr 7:124,023,995...124,041,594
JBrowse link
G Dhcr24 24-dehydrocholesterol reductase ISO
ISS
IEA
(PMID:11519011)
MGI:MGI:3027024 (MGI:MGI:2686848|PMID:14684813), (MGI:MGI:3624168|PMID:16321981), (MGI:MGI:3769949|PMID:16513830)
GO_REF:0000024
GO_REF:0000041
RGD
UniProt
PMID:11519011, PMID:14684813, PMID:16321981, PMID:16513830 GO_REF:0000024, GO_REF:0000041, MGI:MGI:2686848, MGI:MGI:3624168, MGI:MGI:3769949 NCBI chr 5:126,164,708...126,188,926
Ensembl chr 5:126,164,674...126,191,206
JBrowse link
G Dhcr7 7-dehydrocholesterol reductase TAS
IBA
ISO
IEA
IMP
IC
IDA
PMID:21873635
(PMID:9465114)
GO_REF:0000041
RGD
UniProt
PMID:9465114, PMID:12031495, PMID:21873635, PMID:9831636, PMID:10666310, PMID:10329655 GO_REF:0000041, RGD:625561, RGD:13792537, RGD:2316918, RGD:2316916, RGD:632010 NCBI chr 1:217,018,916...217,034,890
Ensembl chr 1:217,018,916...217,034,904
JBrowse link
G Ebp EBP, cholestenol delta-isomerase IDA
IBA
ISO
IEA
TAS
PMID:21873635
(PMID:9894009)
GO_REF:0000041
RGD
UniProt
PMID:9894009, PMID:11171067, PMID:21873635, PMID:11171067 GO_REF:0000041, RGD:628445, RGD:13792537, RGD:628445 NCBI chr  X:15,049,394...15,055,782
Ensembl chr  X:15,049,462...15,055,781
JBrowse link
G Fdft1 farnesyl diphosphate farnesyl transferase 1 TAS
IBA
IMP
PMID:21873635 RGD
GO_Central
PMID:1400448, PMID:21873635, PMID:16440058 RGD:728402, RGD:13792537, RGD:1626611 NCBI chr15:46,339,248...46,367,302
Ensembl chr15:46,339,249...46,367,302
JBrowse link
G Fdps farnesyl diphosphate synthase TAS RGD PMID:1321149 RGD:728501 NCBI chr 2:188,403,595...188,413,219
Ensembl chr 2:188,392,858...188,413,219
JBrowse link
G G6pd glucose-6-phosphate dehydrogenase ISO (PMID:12027950) RGD PMID:12027950 NCBI chr  X:156,274,800...156,293,935
Ensembl chr  X:156,274,800...156,293,926
JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase IDA
ISO
(MGI:MGI:2180727|PMID:8647961), (MGI:MGI:3603484|PMID:15845870), (MGI:MGI:70238|PMID:7798939)
(PMID:23063590)
RGD PMID:7798939, PMID:8647961, PMID:15845870, PMID:23063590, PMID:12841361 MGI:MGI:2180727, MGI:MGI:3603484, MGI:MGI:70238, RGD:1300058 NCBI chr 2:27,480,224...27,500,654
Ensembl chr 2:27,480,226...27,500,654
JBrowse link
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:52,427,351...52,445,082
Ensembl chr 2:52,431,601...52,445,055
JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:200,452,623...200,480,785
Ensembl chr 2:200,452,624...200,479,423
JBrowse link
G Hsd17b7 hydroxysteroid (17-beta) dehydrogenase 7 ISO
IEA
IBA
ISS
(MGI:MGI:2673751|PMID:12829805)
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:12829805)
RGD
Ensembl
UniProt
PMID:12829805, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:MGI:2673751, RGD:13792537 NCBI chr13:88,288,116...88,308,019
Ensembl chr13:88,288,046...88,307,988
JBrowse link
G Idi1 isopentenyl-diphosphate delta isomerase 1 TAS
IEA
GO_REF:0000043 UniProt PMID:9228075 GO_REF:0000043, RGD:729078 NCBI chr17:57,976,266...57,984,036
Ensembl chr17:57,976,268...57,984,036
JBrowse link
G Insig1 insulin induced gene 1 ISO
IBA
MGI:MGI:1920249 (MGI:MGI:3689278|PMID:16955138)
PMID:21873635
(PMID:32322062)
RGD PMID:16955138, PMID:32322062, PMID:21873635 MGI:MGI:3689278, RGD:13792537 NCBI chr 4:342,302...350,515
Ensembl chr 4:342,302...350,515
JBrowse link
G Insig2 insulin induced gene 2 ISO
IBA
ISS
MGI:MGI:1916289 (MGI:MGI:3689278|PMID:16955138)
PMID:21873635
GO_REF:0000024
(PMID:32322062)
RGD
UniProt
PMID:16955138, PMID:32322062, PMID:21873635 GO_REF:0000024, MGI:MGI:3689278, RGD:13792537 NCBI chr13:37,264,818...37,292,718
Ensembl chr13:37,266,312...37,287,458
JBrowse link
G Lbr lamin B receptor ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000041
(MGI:MGI:3822946|PMID:18785926), (MGI:MGI:5308142|PMID:22140257)
(PMID:16784888), (PMID:27336722)
UniProt
RGD
PMID:16784888, PMID:18785926, PMID:22140257, PMID:27336722 GO_REF:0000024, GO_REF:0000041, MGI:MGI:3822946, MGI:MGI:5308142 NCBI chr13:100,431,390...100,450,209 JBrowse link
G LOC102551575 isopentenyl-diphosphate delta-isomerase 2-like IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:57,864,652...57,866,201
Ensembl chr17:57,864,244...57,865,804
JBrowse link
G LOC103694120 isopentenyl-diphosphate delta-isomerase 2-like IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:57,814,239...57,816,277
Ensembl chr17:57,814,539...57,816,256
JBrowse link
G LOC291276 similar to isopentenyl diphosphate delta-isomerase type 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:57,701,861...57,705,698
Ensembl chr17:57,701,861...57,704,293
JBrowse link
G Lss lanosterol synthase IMP
IBA
IDA
IEA
ISO
PMID:21873635
PMID:7568116
GO_REF:0000107
(PMID:17186944)
Ensembl
RGD
PMID:17186944, PMID:16440058, PMID:21873635, PMID:7568116, PMID:1429550 GO_REF:0000107, RGD:1626611, RGD:13792537, RGD:728996, RGD:2316919 NCBI chr20:12,844,522...12,870,474
Ensembl chr20:12,842,884...12,870,497
JBrowse link
G Msmo1 methylsterol monooxygenase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr16:26,859,441...26,875,880
Ensembl chr16:26,859,397...26,875,973
JBrowse link
G Mvd mevalonate diphosphate decarboxylase NAS
IEA
GO_REF:0000041 UniProt PMID:11767099 GO_REF:0000041, RGD:729305 NCBI chr19:55,258,910...55,268,933
Ensembl chr19:55,258,905...55,268,951
JBrowse link
G Mvk mevalonate kinase TAS
IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:1377680)
Ensembl
RGD
PMID:1377680, PMID:2158094, PMID:21873635 GO_REF:0000107, RGD:728935, RGD:13792537 NCBI chr12:47,904,266...47,920,457
Ensembl chr12:47,904,719...47,919,400
JBrowse link
G Npc1l1 NPC1 like intracellular cholesterol transporter 1 ISO (PMID:17140581) RGD PMID:17140581 NCBI chr14:86,345,946...86,560,694
Ensembl chr14:86,345,953...86,560,694
JBrowse link
G Nsdhl NAD(P) dependent steroid dehydrogenase-like IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:152,933,118...152,964,399
Ensembl chr  X:152,933,069...152,964,390
JBrowse link
G Pmvk phosphomevalonate kinase NAS
IBA
ISO
PMID:10191291
PMID:21873635
(PMID:8663599)
RGD PMID:8663599, PMID:10191291, PMID:21873635 RGD:8553625, RGD:13792537 NCBI chr 2:188,784,329...188,793,890
Ensembl chr 2:188,784,222...188,793,895
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:54,857,688...54,893,404
Ensembl chr 2:54,857,688...54,893,404
JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:124,568,845...124,642,569
Ensembl chr 5:124,574,079...124,642,569
JBrowse link
G RGD1564347 similar to isopentenyl diphosphate delta-isomerase type 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:57,674,146...57,688,350
Ensembl chr17:57,676,569...57,687,379
JBrowse link
G Tm7sf2 transmembrane 7 superfamily member 2 IDA
IEA
ISO
PMID:16784888
GO_REF:0000041
(MGI:MGI:3822946|PMID:18785926)
(PMID:16784888)
UniProt
RGD
PMID:16784888, PMID:18785926, PMID:16784888 GO_REF:0000041, MGI:MGI:3822946, RGD:13825441 NCBI chr 1:221,426,017...221,430,340
Ensembl chr 1:221,425,987...221,431,713
JBrowse link
cholesterol biosynthetic process via 24,25-dihydrolanosterol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp51 cytochrome P450, family 51 IDA RGD PMID:7581240 RGD:2316902 NCBI chr 4:27,175,564...27,194,018
Ensembl chr 4:27,175,243...27,194,018
JBrowse link
cholesterol biosynthetic process via lathosterol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sc5d sterol-C5-desaturase IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:7961720, PMID:21873635 RGD:2316911, RGD:13792537 NCBI chr 8:46,525,406...46,537,014
Ensembl chr 8:46,525,400...46,537,050
JBrowse link
cortisol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1h calcium voltage-gated channel subunit alpha1 H IMP
IEA
ISO
PMID:19342457
GO_REF:0000107
(PMID:19342457)
Ensembl
RGD
PMID:19342457, PMID:19342457 GO_REF:0000107, RGD:4891166 NCBI chr10:14,730,932...14,789,201
Ensembl chr10:14,730,941...14,788,617
JBrowse link
G Cyp11b1 cytochrome P450, family 11, subfamily b, polypeptide 1 IMP PMID:19342457 UniProt PMID:19342457 RGD:4891166
G Cyp11b2 cytochrome P450, family 11, subfamily b, polypeptide 2 ISO (PMID:19342457), (PMID:2022736), (PMID:8506298) RGD PMID:2022736, PMID:8506298, PMID:19342457 NCBI chr 7:116,248,759...116,255,205
Ensembl chr 7:116,156,219...116,255,167
JBrowse link
G Cyp11b3 cytochrome P450, family 11, subfamily b, polypeptide 3 NOT ISO (PMID:9703385)
(PMID:19342457)
RGD PMID:9703385, PMID:19342457 NCBI chr 7:116,155,928...116,161,781
Ensembl chr 7:116,156,219...116,255,167
JBrowse link
diol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ephx1 epoxide hydrolase 1 IDA RGD PMID:2507189 RGD:11252156 NCBI chr13:99,271,390...99,300,580
Ensembl chr13:99,271,366...99,300,579
JBrowse link
dolichol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat2 acetyl-CoA acetyltransferase 2 TAS PMID:10806397 UniProt PMID:10806397 RGD:2326086 NCBI chr 1:47,972,399...47,992,654
Ensembl chr 1:47,972,399...47,992,653
JBrowse link
G Nus1 NUS1 dehydrodolichyl diphosphate synthase subunit ISO
IBA
(PMID:25066056)
PMID:21873635
RGD PMID:25066056, PMID:21873635 RGD:13792537 NCBI chr20:33,557,052...33,584,011
Ensembl chr20:33,557,052...33,584,010
JBrowse link
G Srd5a3 steroid 5 alpha-reductase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:34,554,769...34,570,423
Ensembl chr14:34,556,220...34,570,356
JBrowse link
glycerol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 IDA
ISO
PMID:17545671
(MGI:MGI:3722000|PMID:17545671)
RGD PMID:17545671, PMID:17545671 MGI:MGI:3722000, RGD:8553472 NCBI chr 1:263,246,248...263,269,762
Ensembl chr 1:263,246,248...263,269,762
JBrowse link
G Lep leptin IDA RGD PMID:21068181 RGD:5128556 NCBI chr 4:56,337,695...56,351,818
Ensembl chr 4:56,337,695...56,351,818
JBrowse link
G Pdxp pyridoxal phosphatase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:120,140,460...120,145,908
Ensembl chr 7:120,140,460...120,145,908
JBrowse link
G Pgp phosphoglycolate phosphatase IDA
IBA
ISO
PMID:26755581
PMID:21873635
(MGI:MGI:5707518|PMID:26755581)
(PMID:26755581)
RGD PMID:26755581, PMID:26755581, PMID:21873635 MGI:MGI:5707518, RGD:10679995, RGD:13792537 NCBI chr10:13,836,105...13,838,731
Ensembl chr10:13,836,128...13,838,765
JBrowse link
glycerol biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pck1 phosphoenolpyruvate carboxykinase 1 IDA
IBA
ISO
PMID:4186849
PMID:21873635
MGI:MGI:2182390 (MGI:MGI:2157262|PMID:11792850)
RGD PMID:11792850, PMID:4186849, PMID:21873635 MGI:MGI:2157262, RGD:8553288, RGD:13792537 NCBI chr 3:171,213,936...171,219,885
Ensembl chr 3:171,213,936...171,219,871
JBrowse link
G Pck2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:34,216,735...34,224,357
Ensembl chr15:34,216,833...34,224,193
JBrowse link
glycolate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase ISO
ISS
(PMID:22523093)
GO_REF:0000024
(MGI:MGI:5582151|PMID:22523093)
RGD
ParkinsonsUK-UCL
PMID:22523093 GO_REF:0000024, MGI:MGI:5582151 NCBI chr 5:167,982,438...168,004,724
Ensembl chr 5:167,982,439...168,004,724
JBrowse link
inositol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Impa1 inositol monophosphatase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:93,675,203...93,696,355
Ensembl chr 2:93,675,203...93,696,232
JBrowse link
G Impa2 inositol monophosphatase 2 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr18:63,016,577...63,050,123
Ensembl chr18:63,016,577...63,047,781
JBrowse link
G Isyna1 inositol-3-phosphate synthase 1 IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr16:20,589,497...20,592,333
Ensembl chr16:20,589,481...20,592,449
JBrowse link
inositol phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf2 fibroblast growth factor 2 ISO (PMID:20011604) RGD PMID:20011604 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681
JBrowse link
G Ip6k1 inositol hexakisphosphate kinase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:116,781,957...116,826,152
Ensembl chr 8:116,804,451...116,823,540
JBrowse link
G Ip6k2 inositol hexakisphosphate kinase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:117,574,136...117,599,849
Ensembl chr 8:117,574,161...117,599,848
JBrowse link
G Ip6k3 inositol hexakisphosphate kinase 3 ISO
IBA
(PMID:11502751)
PMID:21873635
RGD PMID:11502751, PMID:21873635 RGD:13792537 NCBI chr20:5,733,485...5,754,859
Ensembl chr20:5,733,482...5,754,773
JBrowse link
G Ipmk inositol polyphosphate multikinase ISO
IBA
MGI:MGI:3583918 (MGI:MGI:3583505|PMID:15939867)
PMID:21873635
RGD PMID:15939867, PMID:21873635 MGI:MGI:3583505, RGD:13792537 NCBI chr20:18,457,309...18,489,884
Ensembl chr20:18,457,310...18,489,833
JBrowse link
G Ippk inositol-pentakisphosphate 2-kinase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:15,604,148...15,643,312
Ensembl chr17:15,604,145...15,643,489
JBrowse link
G Itpka inositol-trisphosphate 3-kinase A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:111,545,007...111,553,605
Ensembl chr 3:111,545,007...111,553,604
JBrowse link
G Itpkb inositol-trisphosphate 3-kinase B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:98,615,287...98,710,426
Ensembl chr13:98,615,287...98,708,149
JBrowse link
G Itpkc inositol-trisphosphate 3-kinase C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:84,018,857...84,040,433
Ensembl chr 1:84,018,859...84,040,433
JBrowse link
G Ppip5k1 diphosphoinositol pentakisphosphate kinase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:113,272,850...113,316,324
Ensembl chr 3:113,272,850...113,445,435
JBrowse link
G Ppip5k2 diphosphoinositol pentakisphosphate kinase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:111,232,967...111,249,613
Ensembl chr 9:111,220,858...111,286,185
JBrowse link
inositol trisphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plcg1 phospholipase C, gamma 1 IMP RGD PMID:16973916 RGD:2299886 NCBI chr 3:156,727,642...156,758,307
Ensembl chr 3:156,727,642...156,758,307
JBrowse link
G Plcg2 phospholipase C, gamma 2 ISO
IEA
(MGI:MGI:85738|PMID:9013981)
GO_REF:0000107
RGD
Ensembl
PMID:9013981 GO_REF:0000107, MGI:MGI:85738 NCBI chr19:50,039,410...50,173,543
Ensembl chr19:50,045,020...50,173,220
JBrowse link
G Ptafr platelet-activating factor receptor ISO (MGI:MGI:85738|PMID:9013981) RGD PMID:9013981 MGI:MGI:85738 NCBI chr 5:150,746,284...150,775,675
Ensembl chr 5:150,754,021...150,775,672
JBrowse link
G Scp2 sterol carrier protein 2 ISO (PMID:12641450) RGD PMID:12641450 NCBI chr 5:127,647,934...127,735,703
Ensembl chr 5:127,620,274...127,735,739
JBrowse link
negative regulation of aldosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 ISO
IEA
(PMID:19584291)
GO_REF:0000107
RGD
Ensembl
PMID:19584291 GO_REF:0000107 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Bmp5 bone morphogenetic protein 5 ISO (PMID:19584291) RGD PMID:19584291 NCBI chr 8:82,669,466...82,950,273
Ensembl chr 8:82,878,941...82,950,273
JBrowse link
G Dkk3 dickkopf WNT signaling pathway inhibitor 3 ISO (PMID:16981135) RGD PMID:16981135 NCBI chr 1:176,940,424...176,983,076
Ensembl chr 1:176,940,693...176,983,045
JBrowse link
G Rest RE1-silencing transcription factor IMP
ISO
PMID:19342457
(PMID:19342457)
RGD PMID:19342457, PMID:19342457 RGD:4891166 NCBI chr14:33,131,985...33,152,019
Ensembl chr14:33,134,511...33,164,141
JBrowse link
negative regulation of calcidiol 1-monooxygenase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 ISO (PMID:16549446) RGD PMID:16549446 NCBI chr 7:70,333,150...70,340,006
Ensembl chr 7:70,335,061...70,340,005
JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor ISO (PMID:15947108) RGD PMID:15947108 NCBI chr14:3,058,035...3,073,332
Ensembl chr14:3,058,993...3,068,371
JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 ISO
IEA
(PMID:15243130)
GO_REF:0000107
RGD
Ensembl
PMID:15243130 GO_REF:0000107 NCBI chr 2:240,773,520...240,890,053
Ensembl chr 2:240,773,456...240,866,689
JBrowse link
negative regulation of cholesterol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E ISO
IEA
IDA
(PMID:1917954)
GO_REF:0000107
RGD
Ensembl
PMID:1917954, PMID:9225228 GO_REF:0000107, RGD:10059686 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
G Erlin1 ER lipid raft associated 1 ISO (PMID:24217618) RGD PMID:24217618 NCBI chr 1:263,810,439...263,845,762
Ensembl chr 1:263,810,439...263,845,762
JBrowse link
G Erlin2 ER lipid raft associated 2 ISO (PMID:24217618) RGD PMID:24217618 NCBI chr16:69,179,005...69,195,452
Ensembl chr16:69,179,588...69,195,097
JBrowse link
G Idi2 isopentenyl-diphosphate delta isomerase 2 ISO (MGI:MGI:5490819|PMID:17202134) RGD PMID:17202134 MGI:MGI:5490819 NCBI chr17:63,107,152...63,107,469 JBrowse link
G Sod1 superoxide dismutase 1 ISO
ISS
(PMID:15473258)
GO_REF:0000024
RGD
UniProt
PMID:15473258 GO_REF:0000024 NCBI chr11:30,363,282...30,368,858
Ensembl chr11:30,363,280...30,368,862
JBrowse link
negative regulation of cortisol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 ISO
IEA
(PMID:19584291)
GO_REF:0000107
RGD
Ensembl
PMID:19584291 GO_REF:0000107 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Bmp5 bone morphogenetic protein 5 ISO (PMID:19584291) RGD PMID:19584291 NCBI chr 8:82,669,466...82,950,273
Ensembl chr 8:82,878,941...82,950,273
JBrowse link
G Dkk3 dickkopf WNT signaling pathway inhibitor 3 ISO (PMID:16981135) RGD PMID:16981135 NCBI chr 1:176,940,424...176,983,076
Ensembl chr 1:176,940,693...176,983,045
JBrowse link
G Rest RE1-silencing transcription factor IMP
ISO
PMID:19342457
(PMID:19342457)
RGD PMID:19342457, PMID:19342457 RGD:4891166 NCBI chr14:33,131,985...33,152,019
Ensembl chr14:33,134,511...33,164,141
JBrowse link
negative regulation of inositol phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plek pleckstrin ISO (PMID:7559487), (PMID:7782310) RGD PMID:7559487, PMID:7782310 NCBI chr14:100,151,518...100,184,192
Ensembl chr14:100,151,210...100,217,913
JBrowse link
G Prkg1 protein kinase cGMP-dependent 1 IMP RGD PMID:7535379 RGD:7777104 NCBI chr 1:248,982,039...250,300,952 JBrowse link
octopamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta-hydroxylase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:5,709,236...5,731,895
Ensembl chr 3:5,709,236...5,731,898
JBrowse link
G Moxd1 monooxygenase, DBH-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:22,124,498...22,206,565
Ensembl chr 1:22,124,495...22,206,505
JBrowse link
G Moxd2 monooxygenase, DBH-like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:69,117,477...69,125,972
Ensembl chr 4:69,117,477...69,125,972
JBrowse link
phytosphingosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acer3 alkaline ceramidase 3 ISO
IBA
(PMID:11356846), (PMID:20068046)
PMID:21873635
RGD PMID:11356846, PMID:20068046, PMID:21873635 RGD:13792537 NCBI chr 1:163,160,987...163,263,621
Ensembl chr 1:163,160,979...163,263,606
JBrowse link
polyprenol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhdds dehydrodolichyl diphosphate synthase subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:152,200,681...152,227,669
Ensembl chr 5:152,199,584...152,227,677
JBrowse link
positive regulation of aldosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp6 bone morphogenetic protein 6 ISO (PMID:16527843) RGD PMID:16527843 NCBI chr17:26,955,142...27,112,820
Ensembl chr17:26,955,142...27,112,820
JBrowse link
G Dab2 DAB adaptor protein 2 IDA RGD PMID:17303656 RGD:7243836 NCBI chr 2:55,747,353...55,768,848
Ensembl chr 2:55,747,318...55,768,270
JBrowse link
G Wnt4 Wnt family member 4 IEA
ISO
GO_REF:0000107
(PMID:16981135)
Ensembl
RGD
PMID:16981135 GO_REF:0000107 NCBI chr 5:155,649,238...155,668,065
Ensembl chr 5:155,649,217...155,672,579
JBrowse link
positive regulation of calcidiol 1-monooxygenase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifng interferon gamma ISO (PMID:9282826) RGD PMID:9282826 NCBI chr 7:61,337,383...61,341,419
Ensembl chr 7:61,337,381...61,341,419
JBrowse link
G Il1b interleukin 1 beta IEA
ISO
GO_REF:0000107
(PMID:16720713), (PMID:17023519)
Ensembl
RGD
PMID:16720713, PMID:17023519 GO_REF:0000107 NCBI chr 3:121,876,256...121,882,637
Ensembl chr 3:121,876,263...121,882,726
JBrowse link
G Tnf tumor necrosis factor ISO (PMID:1690216) RGD PMID:1690216 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
JBrowse link
positive regulation of cholesterol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcg1 ATP binding cassette subfamily G member 1 ISO (MGI:MGI:3768186|PMID:17916878) RGD PMID:17916878 MGI:MGI:3768186 NCBI chr20:9,743,269...9,842,735
Ensembl chr20:9,743,269...9,840,489
JBrowse link
G Cyp7a1 cytochrome P450 family 7 subfamily A member 1 IDA PMID:23536474 BHF-UCL PMID:23536474 RGD:13792517 NCBI chr 5:19,358,734...19,368,431
Ensembl chr 5:19,358,734...19,368,431
JBrowse link
G Fdps farnesyl diphosphate synthase IMP RGD PMID:18637708 RGD:2316295 NCBI chr 2:188,403,595...188,413,219
Ensembl chr 2:188,392,858...188,413,219
JBrowse link
G Fgf1 fibroblast growth factor 1 ISO
ISS
(PMID:19229075)
GO_REF:0000024
RGD
UniProt
PMID:19229075 GO_REF:0000024 NCBI chr18:32,273,830...32,359,831
Ensembl chr18:32,273,770...32,359,824
JBrowse link
G Por cytochrome p450 oxidoreductase IMP RGD PMID:19264869 RGD:2316785 NCBI chr12:23,998,411...24,017,063
Ensembl chr12:23,998,411...24,046,814
JBrowse link
G Scap SREBF chaperone ISO
IEA
(PMID:32322062)
GO_REF:0000107
RGD
Ensembl
PMID:32322062 GO_REF:0000107 NCBI chr 8:118,551,869...118,628,650
Ensembl chr 8:118,570,503...118,628,651
JBrowse link
G Scp2 sterol carrier protein 2 IDA RGD PMID:2554812 RGD:9850260 NCBI chr 5:127,647,934...127,735,703
Ensembl chr 5:127,620,274...127,735,739
JBrowse link
G Sec14l2 SEC14-like lipid binding 2 IDA RGD PMID:11226224 RGD:727312 NCBI chr14:84,335,594...84,360,354
Ensembl chr14:84,335,597...84,355,528
JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 ISO
ISS
(PMID:32322062)
MGI:MGI:2177958|MGI:MGI:2177959 (MGI:MGI:1098057|PMID:9329978), (MGI:MGI:3603730|PMID:16046411), (MGI:MGI:3623165|PMID:9062341), (MGI:MGI:83216|PMID:8833906)
GO_REF:0000024
RGD
UniProt
PMID:8833906, PMID:9062341, PMID:9329978, PMID:16046411, PMID:32322062 GO_REF:0000024, MGI:MGI:1098057, MGI:MGI:3603730, MGI:MGI:3623165, MGI:MGI:83216 NCBI chr10:46,570,996...46,593,021
Ensembl chr10:46,570,996...46,593,009
JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 ISO
ISS
(PMID:32322062)
GO_REF:0000024
RGD
UniProt
PMID:32322062 GO_REF:0000024 NCBI chr 7:123,381,082...123,438,605
Ensembl chr 7:123,381,077...123,438,603
JBrowse link
positive regulation of cortisol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt4 Wnt family member 4 IEA
ISO
GO_REF:0000107
(PMID:16981135)
Ensembl
RGD
PMID:16981135 GO_REF:0000107 NCBI chr 5:155,649,238...155,668,065
Ensembl chr 5:155,649,217...155,672,579
JBrowse link
positive regulation of inositol phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcyap1r1 ADCYAP receptor type I IDA RGD PMID:8943280 RGD:2315982 NCBI chr 4:85,662,809...85,711,696
Ensembl chr 4:85,662,892...85,711,696
JBrowse link
G Avpr1b arginine vasopressin receptor 1B ISO (PMID:9322919) RGD PMID:9322919 NCBI chr13:48,367,307...48,378,831
Ensembl chr13:48,367,307...48,378,831
JBrowse link
G Cd244 CD244 molecule ISO (PMID:8376943) RGD PMID:8376943 NCBI chr13:89,959,091...89,995,993
Ensembl chr13:89,975,267...89,995,974
JBrowse link
G Mas1 MAS1 proto-oncogene, G protein-coupled receptor IDA RGD PMID:1332507 RGD:2316794 NCBI chr 1:48,076,761...48,108,218
Ensembl chr 1:48,077,033...48,108,216
JBrowse link
G Ntsr1 neurotensin receptor 1 IMP RGD PMID:11861328 RGD:9743897 NCBI chr 3:175,982,313...176,046,345
Ensembl chr 3:175,885,894...176,046,345
JBrowse link
G Ptafr platelet-activating factor receptor IDA RGD PMID:8798508 RGD:9999203 NCBI chr 5:150,746,284...150,775,675
Ensembl chr 5:150,754,021...150,775,672
JBrowse link
G Pth parathyroid hormone ISO (PMID:11604398) RGD PMID:11604398 NCBI chr 1:178,215,829...178,218,761
Ensembl chr 1:178,215,829...178,218,761
JBrowse link
G Pth1r parathyroid hormone 1 receptor IDA PMID:19608645 BHF-UCL PMID:19608645 RGD:8553376 NCBI chr 8:118,984,531...119,012,803
Ensembl chr 8:118,988,053...119,012,671
JBrowse link
G Snca synuclein alpha ISO (PMID:15641770) RGD PMID:15641770 NCBI chr 4:90,782,412...90,883,236
Ensembl chr 4:90,782,374...90,882,285
JBrowse link
positive regulation of inositol trisphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gper1 G protein-coupled estrogen receptor 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:15705806)
Ensembl
UniProt
RGD
PMID:15705806 GO_REF:0000024, GO_REF:0000107 NCBI chr12:17,309,122...17,315,267
Ensembl chr12:17,309,834...17,311,112
JBrowse link
G Lhcgr luteinizing hormone/choriogonadotropin receptor ISO
IEA
(MGI:MGI:5318037|PMID:10493819)
GO_REF:0000107
RGD
Ensembl
PMID:10493819 GO_REF:0000107, MGI:MGI:5318037 NCBI chr 6:12,493,182...12,554,482
Ensembl chr 6:12,493,943...12,554,439
JBrowse link
G Myh9 myosin, heavy chain 9 IMP RGD PMID:20068007 RGD:6902910 NCBI chr 7:118,740,005...118,792,507
Ensembl chr 7:118,741,110...118,792,625
JBrowse link
G P2ry1 purinergic receptor P2Y1 IDA PMID:11390975 BHF-UCL PMID:11390975 RGD:8553380 NCBI chr 2:151,314,818...151,320,312
Ensembl chr 2:151,314,818...151,320,319
JBrowse link
G P2ry6 pyrimidinergic receptor P2Y6 ISO (PMID:8670200) RGD PMID:8670200 NCBI chr 1:165,972,439...166,008,348
Ensembl chr 1:165,972,440...165,997,751
JBrowse link
G Plcd1 phospholipase C, delta 1 IMP RGD PMID:16709602 RGD:2300424 NCBI chr 8:127,753,514...127,782,070
Ensembl chr 8:127,753,539...127,782,070
JBrowse link
G Pou1f1 POU class 1 homeobox 1 ISO MGI:MGI:1856024|MGI:MGI:1856025 (MGI:MGI:2135699|PMID:11371619) RGD PMID:11371619 MGI:MGI:2135699 NCBI chr11:2,645,659...2,662,581
Ensembl chr11:2,645,865...2,662,579
JBrowse link
protein deglycation, glyoxal removal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase ISO
IEA
IBA
(PMID:25416785)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:25416785, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 5:167,982,438...168,004,724
Ensembl chr 5:167,982,439...168,004,724
JBrowse link
regulation of aldosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clcn2 chloride voltage-gated channel 2 ISS
ISO
GO_REF:0000024
(PMID:29403011)
UniProt
RGD
PMID:29403011 GO_REF:0000024 NCBI chr11:82,862,664...82,876,165
Ensembl chr11:83,883,879...83,897,394
JBrowse link
G LOC108348101 chloride channel protein 2 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:83,883,428...83,897,396
Ensembl chr11:83,883,879...83,897,394
JBrowse link
regulation of calcidiol 1-monooxygenase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vdr vitamin D receptor ISO
IEA
(MGI:MGI:1097206|PMID:9295274)
GO_REF:0000107
RGD
Ensembl
PMID:9295274 GO_REF:0000107, MGI:MGI:1097206 NCBI chr 7:139,344,452...139,394,138
Ensembl chr 7:139,342,063...139,394,166
JBrowse link
regulation of cholesterol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca2 ATP binding cassette subfamily A member 2 NOT ISO (PMID:21810484) RGD PMID:21810484 NCBI chr 3:2,648,787...2,668,770
Ensembl chr 3:2,648,885...2,668,809
JBrowse link
G Apob apolipoprotein B ISO MGI:MGI:2183298 (MGI:MGI:3652707|PMID:16455790) RGD PMID:16455790 MGI:MGI:3652707 NCBI chr 6:33,176,826...33,216,381
Ensembl chr 6:33,176,778...33,224,997
JBrowse link
G Cyp51 cytochrome P450, family 51 TAS RGD PMID:7665087 RGD:1298863 NCBI chr 4:27,175,564...27,194,018
Ensembl chr 4:27,175,243...27,194,018
JBrowse link
G Dhcr7 7-dehydrocholesterol reductase IDA RGD PMID:10329655 RGD:632010 NCBI chr 1:217,018,916...217,034,890
Ensembl chr 1:217,018,916...217,034,904
JBrowse link
G Lpcat3 lysophosphatidylcholine acyltransferase 3 ISS
ISO
GO_REF:0000024
(MGI:MGI:6278041|PMID:29395055)
UniProt
RGD
PMID:29395055 GO_REF:0000024, MGI:MGI:6278041 NCBI chr 4:157,181,722...157,222,997
Ensembl chr 4:157,181,795...157,222,996
JBrowse link
G Mvk mevalonate kinase NAS RGD PMID:2158094 RGD:728935 NCBI chr12:47,904,266...47,920,457
Ensembl chr12:47,904,719...47,919,400
JBrowse link
G Pex2 peroxisomal biogenesis factor 2 ISO MGI:MGI:2180128 (MGI:MGI:3027293|PMID:14673138) RGD PMID:14673138 MGI:MGI:3027293 NCBI chr 2:98,251,756...98,269,185
Ensembl chr 2:98,252,925...98,269,184
JBrowse link
G Scap SREBF chaperone ISO MGI:MGI:2148743|MGI:MGI:2180899 (MGI:MGI:3770209|PMID:16054043) RGD PMID:16054043 MGI:MGI:3770209 NCBI chr 8:118,551,869...118,628,650
Ensembl chr 8:118,570,503...118,628,651
JBrowse link
regulation of cortisol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dgkq diacylglycerol kinase, theta ISO (PMID:24369117) RGD PMID:24369117 NCBI chr14:2,069,409...2,083,370
Ensembl chr14:2,069,409...2,083,370
JBrowse link
G H6pd hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) ISO (PMID:18628520), (PMID:23132696)
(MGI:MGI:3623644|PMID:16356929)
RGD PMID:16356929, PMID:18628520, PMID:23132696 MGI:MGI:3623644 NCBI chr 5:166,994,683...167,030,441
Ensembl chr 5:166,998,881...167,030,441
JBrowse link
regulation of inositol trisphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptk2b protein tyrosine kinase 2 beta ISO
ISS
(MGI:MGI:3583523|PMID:12960403)
GO_REF:0000024
RGD
UniProt
PMID:12960403 GO_REF:0000024, MGI:MGI:3583523 NCBI chr15:42,827,306...42,947,796
Ensembl chr15:42,827,310...42,947,656
JBrowse link
sorbitol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b1 aldo-keto reductase family 1 member B IMP RGD PMID:6690344, PMID:21376710 RGD:1626096, RGD:8548687 NCBI chr 4:61,706,866...61,720,959
Ensembl chr 4:61,706,864...61,720,956
JBrowse link
sphinganine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 ISO MGI:MGI:3815115 (MGI:MGI:3846467|PMID:19416652) RGD PMID:19416652 MGI:MGI:3846467 NCBI chr17:11,856,525...11,895,566
Ensembl chr17:11,856,525...11,895,566
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 ISO (MGI:MGI:1098386|PMID:9363775) RGD PMID:9363775 MGI:MGI:1098386 NCBI chr 6:111,334,408...111,417,960
Ensembl chr 6:111,339,136...111,417,954
JBrowse link
sphingosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca2 ATP binding cassette subfamily A member 2 ISO
IEA
(PMID:26510981)
GO_REF:0000107
RGD
Ensembl
PMID:26510981 GO_REF:0000107 NCBI chr 3:2,648,787...2,668,770
Ensembl chr 3:2,648,885...2,668,809
JBrowse link
G Acer1 alkaline ceramidase 1 ISO (PMID:17713573), (PMID:20207939), (PMID:20628055)
(MGI:MGI:5800647|PMID:27126290), (MGI:MGI:6107252|PMID:29056331)
RGD PMID:17713573, PMID:20207939, PMID:20628055, PMID:27126290, PMID:29056331 MGI:MGI:5800647, MGI:MGI:6107252 NCBI chr 9:10,061,978...10,093,588
Ensembl chr 9:10,061,978...10,093,588
JBrowse link
G Acer2 alkaline ceramidase 2 ISO (PMID:16940153), (PMID:20089856), (PMID:20207939), (PMID:20628055)
(MGI:MGI:6116621|PMID:29401619)
RGD PMID:16940153, PMID:20089856, PMID:20207939, PMID:20628055, PMID:29401619 MGI:MGI:6116621 NCBI chr 5:105,230,540...105,279,732
Ensembl chr 5:105,230,580...105,279,731
JBrowse link
G Acer3 alkaline ceramidase 3 ISO (PMID:20068046), (PMID:20207939), (PMID:26792856)
(MGI:MGI:5749603|PMID:26474409)
RGD PMID:20068046, PMID:20207939, PMID:26474409, PMID:26792856 MGI:MGI:5749603 NCBI chr 1:163,160,987...163,263,621
Ensembl chr 1:163,160,979...163,263,606
JBrowse link
G Agk acylglycerol kinase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:68,483,345...68,561,518
Ensembl chr 4:68,483,320...68,560,801
JBrowse link
G Asah1 N-acylsphingosine amidohydrolase 1 IEA
ISO
ISS
GO_REF:0000107
(PMID:10610716), (PMID:12815059)
GO_REF:0000024
(MGI:MGI:1267186|PMID:9653654)
Ensembl
RGD
UniProt
PMID:9653654, PMID:10610716, PMID:12815059 GO_REF:0000024, GO_REF:0000107, MGI:MGI:1267186 NCBI chr16:53,998,604...54,030,006
Ensembl chr16:53,998,560...54,040,836
JBrowse link
G Asah2 N-acylsphingosine amidohydrolase 2 IDA
IBA
ISO
PMID:10488143
PMID:21873635
(MGI:MGI:3608219|PMID:16126722), (MGI:MGI:3640407|PMID:16380386), (MGI:MGI:6275120|PMID:10652340)
(PMID:30154232)
PMID:15217782
PMID:15123644
RGD PMID:10652340, PMID:16126722, PMID:16380386, PMID:30154232, PMID:10488143, PMID:21873635, PMID:15217782, PMID:15123644 MGI:MGI:3608219, MGI:MGI:3640407, MGI:MGI:6275120, RGD:13838800, RGD:13792537, RGD:13838794, RGD:13838793 NCBI chr 1:250,557,042...250,665,083
Ensembl chr 1:250,557,044...250,630,677
JBrowse link
G Gba glucosylceramidase beta ISO (PMID:19279011) RGD PMID:19279011 NCBI chr 2:188,511,781...188,522,602
Ensembl chr 2:188,516,582...188,522,601
JBrowse link
G Sphk1 sphingosine kinase 1 ISO
IBA
IEA
UniProtKB:Q9NRA0 (PMID:23106337)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:23106337, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:105,498,728...105,504,401
Ensembl chr10:105,498,728...105,504,393
JBrowse link
G Sphk2 sphingosine kinase 2 ISO
IBA
UniProtKB:Q9NYA1 (PMID:23106337)
PMID:21873635
RGD PMID:23106337, PMID:21873635 RGD:13792537 NCBI chr 1:101,692,972...101,700,604
Ensembl chr 1:101,692,973...101,697,277
JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 ISO
IBA
MGI:MGI:3815115 (MGI:MGI:3814228|PMID:16216550)
PMID:21873635
RGD PMID:16216550, PMID:21873635 MGI:MGI:3814228, RGD:13792537 NCBI chr17:11,856,525...11,895,566
Ensembl chr17:11,856,525...11,895,566
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 ISO
IBA
MGI:MGI:3815117 (MGI:MGI:3814228|PMID:16216550)
PMID:21873635
RGD PMID:16216550, PMID:21873635 MGI:MGI:3814228, RGD:13792537 NCBI chr 6:111,334,408...111,417,960
Ensembl chr 6:111,339,136...111,417,954
JBrowse link
G Sptlc3 serine palmitoyltransferase, long chain base subunit 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:132,560,437...132,689,313
Ensembl chr 3:132,560,506...132,692,737
JBrowse link
tetrahydrobiopterin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhfr dihydrofolate reductase ISO (PMID:23707606)
(MGI:MGI:5645206|PMID:19666465)
RGD PMID:19666465, PMID:23707606 MGI:MGI:5645206 NCBI chr 2:21,931,887...21,958,927
Ensembl chr 2:21,931,493...21,962,453
JBrowse link
G Gch1 GTP cyclohydrolase 1 TAS
IBA
ISO
PMID:21873635
(PMID:17101830), (PMID:19666465), (PMID:7678411), (PMID:9445252)
RGD PMID:7678411, PMID:9445252, PMID:17101830, PMID:19666465, PMID:12051753, PMID:21873635 RGD:625450, RGD:13792537 NCBI chr15:23,935,011...23,968,971
Ensembl chr15:23,934,585...23,969,011
JBrowse link
G Pcbd1 pterin-4 alpha-carbinolamine dehydratase 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:30,689,690...30,696,465
Ensembl chr20:30,690,810...30,696,476
JBrowse link
G Pcbd2 pterin-4 alpha-carbinolamine dehydratase 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:8,929,675...8,980,712
Ensembl chr17:8,929,810...8,980,571
JBrowse link
G Pts 6-pyruvoyl-tetrahydropterin synthase TAS
IEA
ISO
GO_REF:0000041
(MGI:MGI:1328867|PMID:9894812)
UniProt
RGD
PMID:9894812, PMID:1939130 GO_REF:0000041, MGI:MGI:1328867, RGD:68294 NCBI chr 8:54,954,261...54,961,271
Ensembl chr 8:54,954,226...54,961,265
JBrowse link
G Qdpr quinoid dihydropteridine reductase TAS
IBA
IMP
IDA
PMID:21873635
PMID:1898002
RGD
GO_Central
UniProt
PMID:3680258, PMID:21873635, PMID:1898002, PMID:9235988, PMID:660556 RGD:729701, RGD:13792537, RGD:8553309, RGD:5128582, RGD:4139903 NCBI chr14:70,164,682...70,178,284
Ensembl chr14:70,164,650...70,178,284
JBrowse link
G RGD1560795 similar to Sepiapterin reductase (SPR) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:116,933,277...116,936,466
Ensembl chr 4:116,933,341...116,936,066
JBrowse link
G Spr sepiapterin reductase TAS
IBA
IMP
PMID:21873635 RGD
GO_Central
PMID:2201030, PMID:21873635, PMID:2179471 RGD:70022, RGD:13792537, RGD:1600056 NCBI chr 4:116,912,343...116,916,073
Ensembl chr 4:116,912,351...116,916,236
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20015
    metabolic process 12259
      small molecule metabolic process 1870
        alcohol metabolic process 358
          alcohol biosynthetic process 154
            amino acid catabolic process to alcohol via Ehrlich pathway + 0
            cellular alcohol biosynthetic process + 4
            cyclopentanol biosynthetic process 0
            fatty alcohol biosynthetic process + 0
            fonsecin biosynthetic process 0
            monensin A biosynthetic process 0
            negative regulation of alcohol biosynthetic process + 14
            octopamine biosynthetic process 3
            polyol biosynthetic process + 69
            polyprenol biosynthetic process + 4
            positive regulation of alcohol biosynthetic process + 32
            prenol biosynthetic process 0
            primary alcohol biosynthetic process + 16
            regulation of alcohol biosynthetic process + 59
            secondary alcohol biosynthetic process + 59
            tertiary alcohol biosynthetic process + 11
Path 2
Term Annotations click to browse term
  biological_process 20015
    metabolic process 12259
      organic substance metabolic process 11639
        organic substance biosynthetic process 6116
          organic hydroxy compound biosynthetic process 241
            alcohol biosynthetic process 154
              amino acid catabolic process to alcohol via Ehrlich pathway + 0
              cellular alcohol biosynthetic process + 4
              cyclopentanol biosynthetic process 0
              fatty alcohol biosynthetic process + 0
              fonsecin biosynthetic process 0
              monensin A biosynthetic process 0
              negative regulation of alcohol biosynthetic process + 14
              octopamine biosynthetic process 3
              polyol biosynthetic process + 69
              polyprenol biosynthetic process + 4
              positive regulation of alcohol biosynthetic process + 32
              prenol biosynthetic process 0
              primary alcohol biosynthetic process + 16
              regulation of alcohol biosynthetic process + 59
              secondary alcohol biosynthetic process + 59
              tertiary alcohol biosynthetic process + 11
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.