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ONTOLOGY REPORT - ANNOTATIONS

Term:pigment biosynthetic process
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Accession:GO:0046148 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a pigment, any general or particular coloring matter in living organisms, e.g. melanin.
Synonyms:exact_synonym: pigment anabolism;   pigment biosynthesis;   pigment formation;   pigment synthesis

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pigment biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:12036291) MGI PMID:12036291 NCBI chrNW_004936566:1,630,698...1,632,607
Ensembl chrNW_004936566:1,631,822...1,632,613 		JBrowse link
carotenoid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppox protoporphyrinogen oxidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936903:470,317...474,705
Ensembl chrNW_004936903:470,344...478,025 		JBrowse link
flavonol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgds TDP-glucose 4,6-dehydratase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936472:14,993,579...15,016,270
Ensembl chrNW_004936472:14,993,710...15,014,408 		JBrowse link
heme A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:226,481...237,258
Ensembl chrNW_004936559:226,424...241,684 		JBrowse link
G Alas1 5'-aminolevulinate synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:3,518,337...3,531,842
Ensembl chrNW_004936529:3,518,322...3,531,845 		JBrowse link
G Cpox coproporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936630:4,412,099...4,424,867
Ensembl chrNW_004936630:4,412,273...4,425,520 		JBrowse link
G Fech ferrochelatase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:6,755,626...6,788,568
Ensembl chrNW_004936497:6,755,553...6,790,944 		JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:4,037,888...4,046,089
Ensembl chrNW_004936542:4,037,201...4,050,810 		JBrowse link
G LOC101959085 cytochrome c oxidase assembly protein COX15 homolog involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936636:385,198...401,090
Ensembl chrNW_004936636:385,018...401,851 		JBrowse link
G LOC101967907 protoheme IX farnesyltransferase, mitochondrial involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16103131)
(PMID:16782876)		 Ensembl
MGI
TreeGrafter		 PMID:16103131 PMID:16782876 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936724:783,591...905,625
Ensembl chrNW_004936724:783,224...905,710 		JBrowse link
G Ppox protoporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936903:470,317...474,705
Ensembl chrNW_004936903:470,344...478,025 		JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:26,207,169...26,210,599
Ensembl chrNW_004936474:26,207,169...26,210,623 		JBrowse link
G Uros uroporphyrinogen III synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:13,792,354...13,816,744
Ensembl chrNW_004936486:13,791,286...13,817,238 		JBrowse link
heme B biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 (LAN blood group) NOT|involved_in ISO (PMID:22655043) UniProt PMID:22655043 NCBI chrNW_004936569:1,628,649...1,635,599
Ensembl chrNW_004936569:1,625,374...1,635,694 		JBrowse link
G Alad aminolevulinate dehydratase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:226,481...237,258
Ensembl chrNW_004936559:226,424...241,684 		JBrowse link
G Alas1 5'-aminolevulinate synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:3,518,337...3,531,842
Ensembl chrNW_004936529:3,518,322...3,531,845 		JBrowse link
G Cpox coproporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936630:4,412,099...4,424,867
Ensembl chrNW_004936630:4,412,273...4,425,520 		JBrowse link
G Fech ferrochelatase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:6,755,626...6,788,568
Ensembl chrNW_004936497:6,755,553...6,790,944 		JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:4,037,888...4,046,089
Ensembl chrNW_004936542:4,037,201...4,050,810 		JBrowse link
G Ppox protoporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936903:470,317...474,705
Ensembl chrNW_004936903:470,344...478,025 		JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:26,207,169...26,210,599
Ensembl chrNW_004936474:26,207,169...26,210,623 		JBrowse link
G Uros uroporphyrinogen III synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:13,792,354...13,816,744
Ensembl chrNW_004936486:13,791,286...13,817,238 		JBrowse link
heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb10 ATP binding cassette subfamily B member 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:20,154,467...20,179,748
Ensembl chrNW_004936484:20,155,595...20,180,183 		JBrowse link
G Alad aminolevulinate dehydratase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:14050799), (PMID:4959158), (PMID:4981581) RGD
MGI
TreeGrafter
Ensembl
UniProt		 PMID:1764448 PMID:4959158 PMID:4981581 PMID:14050799 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 RGD:1599020 NCBI chrNW_004936559:226,481...237,258
Ensembl chrNW_004936559:226,424...241,684 		JBrowse link
G Alas1 5'-aminolevulinate synthase 1 involved_in IEA UniProt
TreeGrafter		 GO_REF:0000043 GO_REF:0000118 NCBI chrNW_004936529:3,518,337...3,531,842
Ensembl chrNW_004936529:3,518,322...3,531,845 		JBrowse link
G Alas2 5'-aminolevulinate synthase 2 involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936751:1,818,255...1,841,028
Ensembl chrNW_004936751:1,814,446...1,841,531 		JBrowse link
G Atp5if1 ATP synthase inhibitory factor subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,396,416...12,399,760
Ensembl chrNW_004936474:12,396,023...12,401,023 		JBrowse link
G Cpox coproporphyrinogen oxidase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:8407975) RGD
MGI
UniProt
Ensembl		 PMID:3955059 PMID:8407975 GO_REF:0000107 GO_REF:0000117 RGD:1600961 NCBI chrNW_004936630:4,412,099...4,424,867
Ensembl chrNW_004936630:4,412,273...4,425,520 		JBrowse link
G Fech ferrochelatase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15496139), (PMID:16503645)
(PMID:16306232)
(PMID:8611576)
(PMID:9989256)		 RGD
MGI
TreeGrafter
Ensembl
UniProt
InterPro		 PMID:3955059 PMID:8611576 PMID:9989256 PMID:15496139 PMID:16306232 More... GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 RGD:1600961 NCBI chrNW_004936497:6,755,626...6,788,568
Ensembl chrNW_004936497:6,755,553...6,790,944 		JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936542:4,037,888...4,046,089
Ensembl chrNW_004936542:4,037,201...4,050,810 		JBrowse link
G Hnf1a HNF1 homeobox A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10617683) Ensembl
MGI		 PMID:10617683 GO_REF:0000107 NCBI chrNW_004936668:62,103...81,549
Ensembl chrNW_004936668:67,535...81,505 		JBrowse link
G LOC101959085 cytochrome c oxidase assembly protein COX15 homolog involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936636:385,198...401,090
Ensembl chrNW_004936636:385,018...401,851 		JBrowse link
G LOC101967907 protoheme IX farnesyltransferase, mitochondrial involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936724:783,591...905,625
Ensembl chrNW_004936724:783,224...905,710 		JBrowse link
G Pgrmc1 progesterone receptor membrane component 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:10,625,989...10,634,058
Ensembl chrNW_004936479:10,625,889...10,634,136 		JBrowse link
G Ppox protoporphyrinogen oxidase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:3346226) RGD
MGI
UniProt
Ensembl		 PMID:3346226 PMID:3955059 GO_REF:0000043 GO_REF:0000107 RGD:1600961 NCBI chrNW_004936903:470,317...474,705
Ensembl chrNW_004936903:470,344...478,025 		JBrowse link
G Slc11a2 solute carrier family 11 member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11739192) Ensembl
MGI		 PMID:11739192 GO_REF:0000107 NCBI chrNW_004936512:8,590,302...8,622,121
Ensembl chrNW_004936512:8,586,262...8,623,597 		JBrowse link
G Slc25a39 solute carrier family 25 member 39 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936541:769,056...770,682
Ensembl chrNW_004936541:769,064...770,686 		JBrowse link
G Tmem14c transmembrane protein 14C involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936534:2,233,467...2,240,223 JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17360334) UniProt
TreeGrafter
MGI
Ensembl		 PMID:17360334 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:26,207,169...26,210,599
Ensembl chrNW_004936474:26,207,169...26,210,623 		JBrowse link
G Uros uroporphyrinogen III synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:13,792,354...13,816,744
Ensembl chrNW_004936486:13,791,286...13,817,238 		JBrowse link
heme O biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:226,481...237,258
Ensembl chrNW_004936559:226,424...241,684 		JBrowse link
G Alas1 5'-aminolevulinate synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:3,518,337...3,531,842
Ensembl chrNW_004936529:3,518,322...3,531,845 		JBrowse link
G Cpox coproporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936630:4,412,099...4,424,867
Ensembl chrNW_004936630:4,412,273...4,425,520 		JBrowse link
G Fech ferrochelatase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:6,755,626...6,788,568
Ensembl chrNW_004936497:6,755,553...6,790,944 		JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:4,037,888...4,046,089
Ensembl chrNW_004936542:4,037,201...4,050,810 		JBrowse link
G LOC101967907 protoheme IX farnesyltransferase, mitochondrial involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936724:783,591...905,625
Ensembl chrNW_004936724:783,224...905,710 		JBrowse link
G Ppox protoporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936903:470,317...474,705
Ensembl chrNW_004936903:470,344...478,025 		JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:26,207,169...26,210,599
Ensembl chrNW_004936474:26,207,169...26,210,623 		JBrowse link
G Uros uroporphyrinogen III synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:13,792,354...13,816,744
Ensembl chrNW_004936486:13,791,286...13,817,238 		JBrowse link
melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asip agouti signaling protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7665913) Ensembl
MGI		 PMID:7665913 GO_REF:0000107 NCBI chrNW_004936561:6,341,667...6,346,440
Ensembl chrNW_004936561:6,341,623...6,346,458 		JBrowse link
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936762:1,387,354...1,392,955
Ensembl chrNW_004936762:1,387,346...1,391,967 		JBrowse link
G Dct dopachrome tautomerase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7665913) UniProt
MGI
Ensembl		 PMID:7665913 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936472:15,074,947...15,110,427
Ensembl chrNW_004936472:15,074,633...15,110,534 		JBrowse link
G LOC101963449 D-dopachrome decarboxylase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936619:1,043,006...1,045,054 JBrowse link
G Mc1r melanocortin 1 receptor acts_upstream_of_or_within ISO (PMID:7665913) MGI PMID:7665913 NCBI chrNW_004936641:193,885...198,730 JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO (PMID:7665913) MGI PMID:7665913 NCBI chrNW_004936471:14,105,832...14,257,386
Ensembl chrNW_004936471:14,111,841...14,254,246 		JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7665913), (PMID:9548375) Ensembl
MGI
TreeGrafter		 PMID:7665913 PMID:9548375 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:38,612,450...38,952,150
Ensembl chrNW_004936471:38,612,427...38,952,199 		JBrowse link
G Pmel premelanosome protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7665913) Ensembl
MGI		 PMID:7665913 GO_REF:0000107 NCBI chrNW_004936646:368,064...379,085
Ensembl chrNW_004936646:365,809...379,130 		JBrowse link
G Slc24a5 solute carrier family 24 member 5 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:18166528) Ensembl
MGI		 PMID:18166528 GO_REF:0000107 NCBI chrNW_004936471:10,470,078...10,492,334
Ensembl chrNW_004936471:10,470,046...10,493,104 		JBrowse link
G Trpc1 transient receptor potential cation channel subfamily C member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936540:4,340,672...4,417,655
Ensembl chrNW_004936540:4,323,528...4,418,685 		JBrowse link
G Tyr tyrosinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9548375)
(PMID:7665913)		 UniProt
MGI
TreeGrafter
Ensembl		 PMID:7665913 PMID:9548375 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936736:421,623...519,085
Ensembl chrNW_004936736:421,598...519,253 		JBrowse link
G Tyrp1 tyrosinase related protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936539:6,537,448...6,555,440
Ensembl chrNW_004936539:6,537,509...6,556,513 		JBrowse link
melanin biosynthetic process from tyrosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dct dopachrome tautomerase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936472:15,074,947...15,110,427
Ensembl chrNW_004936472:15,074,633...15,110,534 		JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:38,612,450...38,952,150
Ensembl chrNW_004936471:38,612,427...38,952,199 		JBrowse link
G Slc45a2 solute carrier family 45 member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:7,094,949...7,139,961
Ensembl chrNW_004936518:7,095,038...7,137,277 		JBrowse link
negative regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd12 major facilitator superfamily domain containing 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,011,838...2,019,119
Ensembl chrNW_004936588:2,011,506...2,019,125 		JBrowse link
G Opn3 opsin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:8,833,495...8,876,631
Ensembl chrNW_004936526:8,833,455...8,876,729 		JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 involved_in ISO (MGI:5499726|PMID:16272156) UniProt PMID:16272156 MGI:5499726 NCBI chrNW_004936576:5,583,847...5,746,583
Ensembl chrNW_004936576:5,583,805...5,746,671 		JBrowse link
G Slc24a5 solute carrier family 24 member 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18166528) Ensembl
MGI		 PMID:18166528 GO_REF:0000107 NCBI chrNW_004936471:10,470,078...10,492,334
Ensembl chrNW_004936471:10,470,046...10,493,104 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:6,031,627...6,052,211
Ensembl chrNW_004936473:6,029,976...6,052,159 		JBrowse link
positive regulation of heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb7 ATP binding cassette subfamily B member 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936683:1,224,703...1,326,761
Ensembl chrNW_004936683:1,222,450...1,326,765 		JBrowse link
G Slc6a9 solute carrier family 6 member 9 involved_in ISO (MGI:6450351|PMID:28495915) ARUK-UCL PMID:28495915 MGI:6450351 NCBI chrNW_004936474:25,312,544...25,344,993
Ensembl chrNW_004936474:25,313,201...25,345,053 		JBrowse link
positive regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:7,580,495...7,647,471
Ensembl chrNW_004936473:7,579,780...7,611,923 		JBrowse link
G Asip agouti signaling protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936561:6,341,667...6,346,440
Ensembl chrNW_004936561:6,341,623...6,346,458 		JBrowse link
G Atp7a ATPase copper transporting alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936683:2,874,022...2,936,214
Ensembl chrNW_004936683:2,874,042...2,935,040 		JBrowse link
G Cdh3 cadherin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:18,908,031...18,954,402
Ensembl chrNW_004936475:18,906,493...18,955,072 		JBrowse link
G Gipc1 GIPC PDZ domain containing family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:3,019,829...3,030,280
Ensembl chrNW_004936659:3,012,012...3,026,883 		JBrowse link
G Opn3 opsin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:8,833,495...8,876,631
Ensembl chrNW_004936526:8,833,455...8,876,729 		JBrowse link
G Pmel premelanosome protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:368,064...379,085
Ensembl chrNW_004936646:365,809...379,130 		JBrowse link
G Rab38 RAB38, member RAS oncogene family ISO RGD PMID:17043139 RGD:152025192 NCBI chrNW_004936736:1,304,290...1,360,412
Ensembl chrNW_004936736:1,304,185...1,361,221 		JBrowse link
G Tyrp1 tyrosinase related protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936539:6,537,448...6,555,440
Ensembl chrNW_004936539:6,537,509...6,556,513 		JBrowse link
protoporphyrinogen IX biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936559:226,481...237,258
Ensembl chrNW_004936559:226,424...241,684 		JBrowse link
G Alas1 5'-aminolevulinate synthase 1 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chrNW_004936529:3,518,337...3,531,842
Ensembl chrNW_004936529:3,518,322...3,531,845 		JBrowse link
G Alas2 5'-aminolevulinate synthase 2 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chrNW_004936751:1,818,255...1,841,028
Ensembl chrNW_004936751:1,814,446...1,841,531 		JBrowse link
G Cpox coproporphyrinogen oxidase involved_in ISO
IEA		 RGD
TreeGrafter
UniProt		 PMID:3814086 GO_REF:0000041 GO_REF:0000118 RGD:4145128 NCBI chrNW_004936630:4,412,099...4,424,867
Ensembl chrNW_004936630:4,412,273...4,425,520 		JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936542:4,037,888...4,046,089
Ensembl chrNW_004936542:4,037,201...4,050,810 		JBrowse link
G Ireb2 iron responsive element binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15831703) Ensembl
MGI		 PMID:15831703 GO_REF:0000107 NCBI chrNW_004936471:36,547,552...36,601,327
Ensembl chrNW_004936471:36,547,500...36,600,636 		JBrowse link
G Ppox protoporphyrinogen oxidase involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chrNW_004936903:470,317...474,705
Ensembl chrNW_004936903:470,344...478,025 		JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936474:26,207,169...26,210,599
Ensembl chrNW_004936474:26,207,169...26,210,623 		JBrowse link
G Uros uroporphyrinogen III synthase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936486:13,792,354...13,816,744
Ensembl chrNW_004936486:13,791,286...13,817,238 		JBrowse link
regulation of heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srrd SRR1 domain containing involved_in ISO (MGI:6282940|PMID:28802827) UniProt PMID:28802827 MGI:6282940 NCBI chrNW_004936657:1,104,833...1,112,854
Ensembl chrNW_004936657:1,104,833...1,112,374 		JBrowse link
G Tmem14a transmembrane protein 14A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:8,179,949...8,198,204
Ensembl chrNW_004936476:8,180,141...8,185,884 		JBrowse link
G Tmem14c transmembrane protein 14C involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25157825) TreeGrafter
MGI		 PMID:25157825 GO_REF:0000118 NCBI chrNW_004936534:2,233,467...2,240,223 JBrowse link
regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctns cystinosin, lysosomal cystine transporter involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936677:342,964...360,890
Ensembl chrNW_004936677:343,042...360,879 		JBrowse link
G Mfsd12 major facilitator superfamily domain containing 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,011,838...2,019,119
Ensembl chrNW_004936588:2,011,506...2,019,125 		JBrowse link
G Slc7a11 solute carrier family 7 member 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16037214) Ensembl
MGI		 PMID:16037214 GO_REF:0000107 NCBI chrNW_004936535:9,177,305...9,242,743
Ensembl chrNW_004936535:9,177,143...9,242,566 		JBrowse link
xanthophyll biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coq6 coenzyme Q6, monooxygenase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936488:3,217,868...3,240,375
Ensembl chrNW_004936488:3,217,288...3,236,438 		JBrowse link
zeaxanthin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpe65 retinoid isomerohydrolase RPE65 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936591:3,347,346...3,368,062
Ensembl chrNW_004936591:3,347,272...3,368,015 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15969
    metabolic process 9630
      pigment metabolic process 64
        pigment biosynthetic process 52
          anthocyanin-containing compound biosynthetic process + 0
          aurone biosynthetic process 0
          carotenoid biosynthetic process + 3
          chlorophyll biosynthetic process + 0
          eye pigment biosynthetic process + 0
          flavone biosynthetic process + 1
          heme biosynthetic process + 24
          melanin biosynthetic process + 24
          ocellus pigment biosynthetic process + 0
          phlobaphene biosynthetic process 0
          phytochrome chromophore biosynthetic process 0
          pigment biosynthetic process involved in pigment accumulation + 0
          pteridine biosynthetic process 0
paths to the root