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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine nucleoside catabolic process
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Accession:GO:0046135 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).
Synonyms:exact_synonym: pyrimidine nucleoside breakdown;   pyrimidine nucleoside catabolism;   pyrimidine nucleoside degradation


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pyrimidine nucleoside catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase TAS Reactome Reactome:R-HSA-73621 NCBI chr 1:97,077,743...97,921,059
Ensembl chr 1:97,077,743...97,995,000
JBrowse link
G DPYS dihydropyrimidinase TAS Reactome Reactome:R-HSA-73621 NCBI chr 8:104,379,429...104,467,074
Ensembl chr 8:104,330,324...104,467,055
JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic TAS Reactome Reactome:R-HSA-73621 NCBI chr17:75,130,228...75,131,965
Ensembl chr17:75,130,225...75,131,757
JBrowse link
G NT5C1A 5'-nucleotidase, cytosolic IA TAS Reactome Reactome:R-HSA-73621 NCBI chr 1:39,651,229...39,672,107
Ensembl chr 1:39,659,121...39,672,038
JBrowse link
G NT5C3A 5'-nucleotidase, cytosolic IIIA TAS Reactome Reactome:R-HSA-73621 NCBI chr 7:33,014,113...33,062,776
Ensembl chr 7:33,014,114...33,062,797
JBrowse link
G NT5E 5'-nucleotidase ecto TAS Reactome Reactome:R-HSA-73621 NCBI chr 6:85,450,083...85,495,784
Ensembl chr 6:85,449,584...85,495,791
JBrowse link
G NT5M 5',3'-nucleotidase, mitochondrial TAS Reactome Reactome:R-HSA-73621 NCBI chr17:17,303,373...17,347,663
Ensembl chr17:17,303,335...17,347,663
JBrowse link
G TYMP thymidine phosphorylase TAS Reactome Reactome:R-HSA-73621 NCBI chr22:50,525,752...50,530,085
Ensembl chr22:50,525,752...50,530,032
JBrowse link
G UPB1 beta-ureidopropionase 1 TAS
IMP
(PMID:22525402) Reactome
UniProt
PMID:22525402 Reactome:R-HSA-73621 NCBI chr22:24,495,060...24,528,681
Ensembl chr22:24,494,107...24,528,390
JBrowse link
G UPP1 uridine phosphorylase 1 TAS Reactome Reactome:R-HSA-73621 NCBI chr 7:48,088,308...48,108,736
Ensembl chr 7:48,088,628...48,108,736
JBrowse link
G UPP2 uridine phosphorylase 2 TAS Reactome Reactome:R-HSA-73621 NCBI chr 2:157,995,179...158,136,154
Ensembl chr 2:157,876,702...158,136,154
JBrowse link
cytidine deamination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase IEA GOC GO_REF:0000108 NCBI chr12:8,602,170...8,612,970
Ensembl chr12:8,602,170...8,612,867
JBrowse link
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 IEA GOC GO_REF:0000108 NCBI chr12:7,649,400...7,670,599
Ensembl chr12:7,649,400...7,665,908
JBrowse link
G APOBEC2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 IEA GOC GO_REF:0000108 NCBI chr 6:41,053,202...41,064,891
Ensembl chr 6:41,053,304...41,064,511
JBrowse link
G APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A IEA GOC GO_REF:0000108 NCBI chr22:38,957,609...38,963,184
Ensembl chr22:38,952,741...38,992,778
JBrowse link
G APOBEC3A_B APOBEC3A and APOBEC3B deletion hybrid IEA GOC GO_REF:0000108 Ensembl chr22:38,952,741...38,992,778 JBrowse link
G APOBEC3B apolipoprotein B mRNA editing enzyme catalytic subunit 3B IEA GOC GO_REF:0000108 NCBI chr22:38,982,347...38,992,779
Ensembl chr22:38,982,347...38,992,804
JBrowse link
G APOBEC3C apolipoprotein B mRNA editing enzyme catalytic subunit 3C IDA (PMID:21632763) UniProtKB PMID:21632763 NCBI chr22:39,014,236...39,020,352
Ensembl chr22:39,014,257...39,020,352
JBrowse link
G APOBEC3D apolipoprotein B mRNA editing enzyme catalytic subunit 3D IEA GOC GO_REF:0000108 NCBI chr22:39,021,127...39,033,277
Ensembl chr22:39,021,113...39,033,277
JBrowse link
G APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F IEA GOC GO_REF:0000108 NCBI chr22:39,019,081...39,055,972
Ensembl chr22:39,040,604...39,055,972
JBrowse link
G APOBEC3G apolipoprotein B mRNA editing enzyme catalytic subunit 3G IDA (PMID:16378963) UniProtKB PMID:16378963 NCBI chr22:39,077,005...39,087,743
Ensembl chr22:39,077,067...39,087,743
JBrowse link
G APOBEC3H apolipoprotein B mRNA editing enzyme catalytic subunit 3H IEA GOC GO_REF:0000108 NCBI chr22:39,097,203...39,104,067
Ensembl chr22:39,097,224...39,104,067
JBrowse link
G CDA cytidine deaminase IDA
IBA
(PMID:9596658)
(PMID:21873635)
UniProtKB
GO_Central
PMID:9596658 PMID:21873635 NCBI chr 1:20,589,097...20,618,903
Ensembl chr 1:20,589,086...20,618,903
JBrowse link
G CDADC1 cytidine and dCMP deaminase domain containing 1 IDA (PMID:26945630) UniProtKB PMID:26945630 NCBI chr13:49,247,875...49,293,486
Ensembl chr13:49,247,925...49,293,485
JBrowse link
thymidine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase IDA (PMID:1512248) UniProtKB PMID:1512248 NCBI chr 1:97,077,743...97,921,059
Ensembl chr 1:97,077,743...97,995,000
JBrowse link
uridine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UPP1 uridine phosphorylase 1 IDA (PMID:7488099) UniProt PMID:7488099 NCBI chr 7:48,088,308...48,108,736
Ensembl chr 7:48,088,628...48,108,736
JBrowse link
G UPP2 uridine phosphorylase 2 IDA (PMID:12849978), (PMID:21855639) UniProt PMID:12849978 PMID:21855639 NCBI chr 2:157,995,179...158,136,154
Ensembl chr 2:157,876,702...158,136,154
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18677
    metabolic process 12129
      small molecule metabolic process 2039
        nucleobase-containing small molecule metabolic process 677
          nucleoside metabolic process 121
            pyrimidine nucleoside metabolic process 37
              pyrimidine nucleoside catabolic process 24
                blasticidin S catabolic process 0
                pyrimidine deoxyribonucleoside catabolic process + 1
                pyrimidine ribonucleoside catabolic process + 15
Path 2
Term Annotations click to browse term
  biological_process 18677
    metabolic process 12129
      cellular metabolic process 11177
        cellular aromatic compound metabolic process 6216
          nucleobase-containing compound metabolic process 5977
            nucleobase-containing small molecule metabolic process 677
              nucleoside metabolic process 121
                pyrimidine nucleoside metabolic process 37
                  pyrimidine nucleoside catabolic process 24
                    blasticidin S catabolic process 0
                    pyrimidine deoxyribonucleoside catabolic process + 1
                    pyrimidine ribonucleoside catabolic process + 15
paths to the root