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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine ribonucleoside metabolic process
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Accession:GO:0046131 term browser browse the term
Definition:The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule.
Synonyms:exact_synonym: pyrimidine ribonucleoside metabolism


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cytidine deamination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase ISO (MGI:2656023|PMID:12692563) RGD PMID:12692563 MGI:2656023 NCBI chr 4:155,359,909...155,371,104
Ensembl chr 4:155,359,921...155,369,671
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:155,386,367...155,414,034
Ensembl chr 4:155,386,711...155,401,480
JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:14,529,218...14,542,731
Ensembl chr 9:14,529,218...14,542,731
JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:121,108,108...121,128,346
Ensembl chr 7:121,109,241...121,128,542
JBrowse link
G Cda cytidine deaminase IDA
IBA
ISO
PMID:21873635
(PMID:9596658)
RGD PMID:9596658, PMID:675715, PMID:21873635 RGD:2316616, RGD:13792537 NCBI chr 5:156,703,579...156,734,541
Ensembl chr 5:156,703,579...156,734,541
JBrowse link
G Cdadc1 cytidine and dCMP deaminase domain containing 1 ISO (PMID:26945630) RGD PMID:26945630 NCBI chr15:39,865,094...39,894,122
Ensembl chr15:39,882,210...39,893,979
JBrowse link
G LOC100909857 cytidine deaminase-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:156,756,678...156,781,306
Ensembl chr 5:156,757,044...156,781,291
JBrowse link
cytidine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 IC PMID:10781591 UniProt PMID:10781591 RGD:8553657 NCBI chr 4:155,386,367...155,414,034
Ensembl chr 4:155,386,711...155,401,480
JBrowse link
uridine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upp1 uridine phosphorylase 1 ISO (PMID:7488099)
(MGI:5476603|PMID:23355744), (MGI:73237|PMID:7744869)
RGD PMID:7488099, PMID:7744869, PMID:23355744 MGI:5476603, MGI:73237 NCBI chr14:89,314,234...89,334,060
Ensembl chr14:89,314,176...89,334,276
JBrowse link
G Upp2 uridine phosphorylase 2 ISO (PMID:12849978), (PMID:21855639)
(MGI:2683856|PMID:14715930)
RGD PMID:12849978, PMID:14715930, PMID:21855639 MGI:2683856 NCBI chr 3:44,806,106...44,846,464
Ensembl chr 3:44,806,106...44,846,464
JBrowse link
uridine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upp1 uridine phosphorylase 1 ISO MGI:3586525 (MGI:3584214|PMID:15772079) RGD PMID:15772079 MGI:3584214 NCBI chr14:89,314,234...89,334,060
Ensembl chr14:89,314,176...89,334,276
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20030
    metabolic process 12185
      cellular metabolic process 10964
        heterocycle metabolic process 5607
          pyrimidine-containing compound metabolic process 66
            pyrimidine nucleoside metabolic process 15
              pyrimidine ribonucleoside metabolic process 9
                cytidine metabolic process + 7
                pyrimidine ribonucleoside biosynthetic process + 0
                pyrimidine ribonucleoside catabolic process + 9
                uridine metabolic process + 2
Path 2
Term Annotations click to browse term
  biological_process 20030
    metabolic process 12185
      nitrogen compound metabolic process 10212
        cellular nitrogen compound metabolic process 6678
          nucleobase-containing compound metabolic process 5476
            nucleobase-containing small molecule metabolic process 591
              nucleoside metabolic process 95
                pyrimidine nucleoside metabolic process 15
                  pyrimidine ribonucleoside metabolic process 9
                    cytidine metabolic process + 7
                    pyrimidine ribonucleoside biosynthetic process + 0
                    pyrimidine ribonucleoside catabolic process + 9
                    uridine metabolic process + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.