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ONTOLOGY REPORT - ANNOTATIONS


Term:purine ribonucleoside metabolic process
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Accession:GO:0046128 term browser browse the term
Definition:The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule.
Synonyms:exact_synonym: purine ribonucleoside metabolism


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adenosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5E 5'-nucleotidase ecto IEA Ensembl GO_REF:0000107 NCBI chr12:45,491,028...45,520,019
Ensembl chr12:45,491,733...45,518,405
JBrowse link
adenosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr24:32,083,786...32,119,810
Ensembl chr24:32,083,931...32,111,160
JBrowse link
G ADA2 adenosine deaminase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:44,883,573...44,912,930
Ensembl chr27:44,884,882...44,912,850
JBrowse link
G ADAL adenosine deaminase like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:10,191,019...10,214,089
Ensembl chr30:10,194,606...10,216,875
JBrowse link
adenosine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACP3 acid phosphatase 3 ISS
IEA
UniProtKB
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr23:29,294,641...29,353,970
Ensembl chr23:29,294,843...29,343,499
JBrowse link
G ADA adenosine deaminase ISO RGD PMID:3746429, PMID:4462574, PMID:6815190, PMID:12675911 RGD:2291853, RGD:2291855, RGD:2291857, RGD:2291861 NCBI chr24:32,083,786...32,119,810
Ensembl chr24:32,083,931...32,111,160
JBrowse link
G ADK adenosine kinase ISO RGD PMID:12675911 RGD:2291861 NCBI chr 4:24,540,626...25,047,032
Ensembl chr 4:24,540,659...25,046,464
JBrowse link
G NT5C1A 5'-nucleotidase, cytosolic IA IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:3,209,771...3,230,104
Ensembl chr15:3,209,869...3,222,983
JBrowse link
G NT5C1B 5'-nucleotidase, cytosolic IB IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:13,848,736...13,870,933 JBrowse link
G NT5C2 5'-nucleotidase, cytosolic II IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:15,525,581...15,621,287
Ensembl chr28:15,526,790...15,621,235
JBrowse link
G NT5C3A 5'-nucleotidase, cytosolic IIIA ISO RGD PMID:12675911 RGD:2291861 NCBI chr14:45,076,487...45,132,000
Ensembl chr14:45,077,099...45,131,905
JBrowse link
G NT5E 5'-nucleotidase ecto ISO RGD PMID:12675911 RGD:2291861 NCBI chr12:45,491,028...45,520,019
Ensembl chr12:45,491,733...45,518,405
JBrowse link
G PTGDR prostaglandin D2 receptor IEA Ensembl GO_REF:0000107 NCBI chr 8:28,480,446...28,491,331
Ensembl chr 8:28,480,478...28,488,855
JBrowse link
GDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GUK1 guanylate kinase 1 ISO RGD PMID:4307347 RGD:5147877 NCBI chr14:820,048...826,694
Ensembl chr14:820,093...827,250
JBrowse link
GDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT18 nudix hydrolase 18 IEA Ensembl GO_REF:0000107 NCBI chr25:35,139,580...35,144,066
Ensembl chr25:35,140,969...35,143,063
JBrowse link
GDP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GUK1 guanylate kinase 1 IEA GOC GO_REF:0000108 NCBI chr14:820,048...826,694
Ensembl chr14:820,093...827,250
JBrowse link
GMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GMPS guanine monophosphate synthase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000041 NCBI chr23:49,569,571...49,645,999
Ensembl chr23:49,569,531...49,699,199
JBrowse link
G IMPDH1 inosine monophosphate dehydrogenase 1 IEA UniProt GO_REF:0000104 NCBI chr14:8,001,575...8,013,181
Ensembl chr14:7,996,717...8,012,467
JBrowse link
G IMPDH2 inosine monophosphate dehydrogenase 2 IEA UniProt GO_REF:0000104 NCBI chr20:40,136,106...40,140,983
Ensembl chr20:40,136,154...40,140,972
JBrowse link
GMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HPRT1 hypoxanthine phosphoribosyltransferase 1 ISS UniProtKB GO_REF:0000024 NCBI chr  X:105,115,732...105,153,702
Ensembl chr  X:105,115,732...105,153,702
JBrowse link
G PRTFDC1 phosphoribosyl transferase domain containing 1 NOT ISO (PMID:21054786) UniProtKB PMID:21054786 NCBI chr 2:8,551,008...8,643,710
Ensembl chr 2:8,559,319...8,642,533
JBrowse link
G URAD ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase ISO (MGI:3665448|PMID:16462750) MGI PMID:16462750 MGI:3665448 NCBI chr25:11,682,304...11,693,143
Ensembl chr25:11,581,206...11,692,284
JBrowse link
G XDH xanthine dehydrogenase ISO (MGI:6306257|PMID:30936145) MGI PMID:30936145 MGI:6306257 NCBI chr17:24,900,708...24,960,748
Ensembl chr17:24,901,447...24,971,935
JBrowse link
GMP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GMPR2 guanosine monophosphate reductase 2 ISO (PMID:22037469) UniProtKB PMID:22037469 NCBI chr 8:4,213,238...4,220,740
Ensembl chr 8:4,213,373...4,220,740
JBrowse link
G GUK1 guanylate kinase 1 IEA GOC GO_REF:0000108 NCBI chr14:820,048...826,694
Ensembl chr14:820,093...827,250
JBrowse link
GMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HPRT1 hypoxanthine phosphoribosyltransferase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:105,115,732...105,153,702
Ensembl chr  X:105,115,732...105,153,702
JBrowse link
GTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IMPDH1 inosine monophosphate dehydrogenase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:8,001,575...8,013,181
Ensembl chr14:7,996,717...8,012,467
JBrowse link
G IMPDH2 inosine monophosphate dehydrogenase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:40,136,106...40,140,983
Ensembl chr20:40,136,154...40,140,972
JBrowse link
G LOC483943 nucleoside diphosphate kinase A pseudogene IEA InterPro GO_REF:0000002 NCBI chr 1:10,046,217...10,046,745 JBrowse link
G NME1 non-metastatic cells 1, protein (NM23A) expressed in IEA InterPro GO_REF:0000002 NCBI chr 9:26,990,336...26,998,895
Ensembl chr 9:26,990,469...26,998,955
JBrowse link
G NME2 non-metastatic cells 2, protein (NM23B) expressed in IEA InterPro GO_REF:0000002 NCBI chr 9:27,002,114...27,005,740
Ensembl chr 9:27,001,733...27,015,934
JBrowse link
G NME4 NME/NM23 nucleoside diphosphate kinase 4 IEA InterPro GO_REF:0000002 NCBI chr 6:40,119,443...40,122,418 JBrowse link
G NME5 NME/NM23 family member 5 IEA InterPro GO_REF:0000002 NCBI chr11:25,772,162...25,792,856
Ensembl chr11:25,772,157...25,792,176
JBrowse link
G NME6 NME/NM23 nucleoside diphosphate kinase 6 IEA InterPro GO_REF:0000002 NCBI chr20:40,769,394...40,778,802
Ensembl chr20:40,769,501...40,776,496
JBrowse link
G NME7 NME/NM23 family member 7 IEA UniProt GO_REF:0000104 NCBI chr 7:29,201,273...29,464,072
Ensembl chr 7:29,206,307...29,463,467
JBrowse link
G NME9 NME/NM23 family member 9 IEA InterPro GO_REF:0000002 NCBI chr23:34,515,003...34,537,386
Ensembl chr23:34,483,520...34,537,312
JBrowse link
GTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK3 adenylate kinase 3 IEA UniProt GO_REF:0000104 NCBI chr 1:93,086,617...93,095,023 JBrowse link
G AK4 adenylate kinase 4 IEA UniProt GO_REF:0000104 NCBI chr 5:45,055,294...45,119,595
Ensembl chr 5:44,884,283...45,120,203
JBrowse link
G AMPD2 adenosine monophosphate deaminase 2 ISO (MGI:5506958|PMID:23911318)
(MGI:5489878|PMID:22212473)
CACAO PMID:22212473, PMID:23911318 MGI:5489878, MGI:5506958 NCBI chr 6:42,239,809...42,251,704
Ensembl chr 6:42,210,025...42,251,950
JBrowse link
G AMPD3 adenosine monophosphate deaminase 3 IEA Ensembl GO_REF:0000107 Ensembl chr21:33,611,637...33,764,862 JBrowse link
G EFL1 elongation factor like GTPase 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:55,720,949...55,840,873
Ensembl chr 3:55,711,048...55,840,888
JBrowse link
G GIMAP7 GTPase, IMAP family member 7 ISO (PMID:23454188) UniProtKB PMID:23454188 NCBI chr16:14,811,427...14,820,441 JBrowse link
G GNAI3 G protein subunit alpha i3 IEA Ensembl GO_REF:0000107 NCBI chr 6:42,275,060...42,315,545
Ensembl chr 6:42,276,998...42,315,533
JBrowse link
G GTPBP1 GTP binding protein 1 ISO PMID:21515746 UniProt PMID:21515746 RGD:8553842 NCBI chr10:26,074,969...26,103,520
Ensembl chr10:26,075,169...26,100,511
JBrowse link
G LOC480491 GTP:AMP phosphotransferase AK3, mitochondrial IEA UniProtKB GO_REF:0000104 NCBI chr 9:10,282,452...10,283,479 JBrowse link
G LRRK2 leucine rich repeat kinase 2 IEA Ensembl GO_REF:0000107 NCBI chr27:13,282,824...13,420,917
Ensembl chr27:13,283,756...13,420,870
JBrowse link
G MFN1 mitofusin 1 IEA Ensembl GO_REF:0000107 NCBI chr34:12,785,799...12,816,881
Ensembl chr34:12,785,856...12,815,994
JBrowse link
G OPA1 OPA1 mitochondrial dynamin like GTPase IEA Ensembl GO_REF:0000107 NCBI chr23:52,068,123...52,154,410
Ensembl chr23:52,068,118...52,151,593
JBrowse link
G RAB23 RAB23, member RAS oncogene family IEA Ensembl GO_REF:0000107 NCBI chr12:24,388,530...24,438,956
Ensembl chr12:24,387,643...24,421,869
JBrowse link
G RAN RAN, member RAS oncogene family ISS
IEA
UniProtKB
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr26:1,435,077...1,436,893
Ensembl chr26:1,434,720...1,436,993
JBrowse link
G RAN RAN, member RAS oncogene family ISS UniProtKB GO_REF:0000024 NCBI chr30:22,170,896...22,171,572 JBrowse link
G RHOA ras homolog family member A ISO PMID:21440892 BHF-UCL PMID:21440892 RGD:7248703 NCBI chr20:39,824,552...39,888,089
Ensembl chr20:39,824,575...39,887,215
JBrowse link
G RHOQ ras homolog family member Q IEA Ensembl GO_REF:0000107 NCBI chr10:48,766,623...48,807,198
Ensembl chr10:48,768,191...48,804,129
JBrowse link
inosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr24:32,083,786...32,119,810
Ensembl chr24:32,083,931...32,111,160
JBrowse link
G ADA2 adenosine deaminase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:44,883,573...44,912,930
Ensembl chr27:44,884,882...44,912,850
JBrowse link
G ADAL adenosine deaminase like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:10,191,019...10,214,089
Ensembl chr30:10,194,606...10,216,875
JBrowse link
G AK1 adenylate kinase 1 ISO RGD PMID:19049516 RGD:5134369 NCBI chr 9:55,539,179...55,548,132
Ensembl chr 9:55,539,260...55,548,132
JBrowse link
inosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PNP purine nucleoside phosphorylase IEA Ensembl GO_REF:0000107 NCBI chr15:17,808,454...17,815,987
Ensembl chr15:17,808,461...17,815,676
JBrowse link
purine ribonucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENPP4 ectonucleotide pyrophosphatase/phosphodiesterase 4 IEA Ensembl GO_REF:0000107 NCBI chr12:14,353,355...14,366,506
Ensembl chr12:14,353,282...14,365,952
JBrowse link
purine ribonucleoside salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADK adenosine kinase IEA Ensembl
UniProt
GO_REF:0000043, GO_REF:0000107 NCBI chr 4:24,540,626...25,047,032
Ensembl chr 4:24,540,659...25,046,464
JBrowse link
G APRT adenine phosphoribosyltransferase IEA Ensembl GO_REF:0000107 NCBI chr 5:64,563,154...64,565,537
Ensembl chr 5:64,563,192...64,565,445
JBrowse link
G HPRT1 hypoxanthine phosphoribosyltransferase 1 ISS
IBA
IEA
(PMID:21873635) UniProtKB
GO_Central
UniProt
PMID:21873635 GO_REF:0000024, GO_REF:0000043 NCBI chr  X:105,115,732...105,153,702
Ensembl chr  X:105,115,732...105,153,702
JBrowse link
G LOC102156635 hypoxanthine phosphoribosyltransferase 1 pseudogene IEA UniProt GO_REF:0000043 NCBI chr 9:57,843,785...57,844,773 JBrowse link
G MTAP methylthioadenosine phosphorylase IEA UniProt GO_REF:0000043 NCBI chr11:41,148,389...41,200,635
Ensembl chr11:41,148,404...41,264,504
JBrowse link
G PRTFDC1 phosphoribosyl transferase domain containing 1 IEA UniProt GO_REF:0000043 NCBI chr 2:8,551,008...8,643,710
Ensembl chr 2:8,559,319...8,642,533
JBrowse link
S-adenosylhomocysteine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHCY adenosylhomocysteinase ISO (MGI:2183618|PMID:12023972) RGD
MGI
PMID:11741948, PMID:12023972 MGI:2183618, RGD:730275 NCBI chr24:23,410,553...23,423,494
Ensembl chr24:23,411,140...23,419,767
JBrowse link
S-adenosylhomocysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GAMT guanidinoacetate N-methyltransferase ISO RGD PMID:15533043 RGD:1359081 NCBI chr20:57,440,698...57,442,588 JBrowse link
G GNMT glycine N-methyltransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:11,500,363...11,503,075
Ensembl chr12:11,500,392...11,503,481
JBrowse link
G ICMT isoprenylcysteine carboxyl methyltransferase ISO RGD PMID:9192075 RGD:2289655 NCBI chr 5:60,119,793...60,128,531
Ensembl chr 5:60,123,054...60,149,027
JBrowse link
G PCMT1 protein-L-isoaspartate (D-aspartate) O-methyltransferase ISO RGD PMID:8263531 RGD:729481 NCBI chr 1:40,494,441...40,539,453
Ensembl chr 1:40,494,461...40,538,937
JBrowse link
G PEMT phosphatidylethanolamine N-methyltransferase ISO RGD PMID:8344945 RGD:729486 NCBI chr 5:41,871,685...41,960,831
Ensembl chr 5:41,872,108...41,960,828
JBrowse link
S-adenosylmethioninamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 IEA UniProt GO_REF:0000041 NCBI chr12:67,432,871...67,453,791
Ensembl chr12:67,448,141...67,451,696
JBrowse link
S-adenosylmethioninamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ICMT isoprenylcysteine carboxyl methyltransferase ISO RGD PMID:9192075 RGD:2289655 NCBI chr 5:60,119,793...60,128,531
Ensembl chr 5:60,123,054...60,149,027
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16186
    cellular process 15465
      cellular metabolic process 9525
        heterocycle metabolic process 5021
          purine-containing compound metabolic process 412
            purine nucleoside metabolic process 63
              purine ribonucleoside metabolic process 59
                S-adenosylhomocysteine metabolic process + 6
                S-adenosylmethioninamine metabolic process + 2
                adenosine metabolic process + 11
                guanosine-containing compound metabolic process + 35
                inosine metabolic process + 5
                purine ribonucleoside biosynthetic process + 24
                purine ribonucleoside catabolic process + 11
                puromycin metabolic process + 0
                xanthosine metabolic process + 0
Path 2
Term Annotations click to browse term
  biological_process 16186
    metabolic process 10571
      cellular metabolic process 9525
        cellular aromatic compound metabolic process 5094
          nucleobase-containing compound metabolic process 4903
            nucleobase-containing small molecule metabolic process 540
              nucleoside metabolic process 92
                ribonucleoside metabolic process 67
                  purine ribonucleoside metabolic process 59
                    S-adenosylhomocysteine metabolic process + 6
                    S-adenosylmethioninamine metabolic process + 2
                    adenosine metabolic process + 11
                    guanosine-containing compound metabolic process + 35
                    inosine metabolic process + 5
                    purine ribonucleoside biosynthetic process + 24
                    purine ribonucleoside catabolic process + 11
                    puromycin metabolic process + 0
                    xanthosine metabolic process + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.