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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleobase catabolic process
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Accession:GO:0046113 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a nucleobase, a nitrogenous base that is a constituent of a nucleic acid.
Synonyms:exact_synonym: nucleobase breakdown;   nucleobase catabolism;   nucleobase degradation


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guanine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gda guanine deaminase involved_in IEA
ISO
GO_REF:0000041
(MGI:6478860|PMID:8064675)
UniProt
RGD
PMID:8064675 GO_REF:0000041 MGI:6478860 NCBI chr 1:218,903,045...218,982,360
Ensembl chr 1:218,906,815...218,982,416
JBrowse link
G Uox urate oxidase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in ISO (MGI:3665448|PMID:16462750) RGD PMID:16462750 MGI:3665448 NCBI chr12:7,709,233...7,718,925
Ensembl chr12:7,709,312...7,718,923
JBrowse link
G Xdh xanthine dehydrogenase involved_in ISO
IDA
IEA
(MGI:49329|PMID:1590774)
PMID:3443108
GO_REF:0000107
RGD
Ensembl
PMID:1590774 PMID:3443108 GO_REF:0000107 MGI:49329, RGD:42721989 NCBI chr 6:21,530,463...21,592,172
Ensembl chr 6:21,530,113...21,592,268
JBrowse link
hypoxanthine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uox urate oxidase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in ISO (MGI:3665448|PMID:16462750) RGD PMID:16462750 MGI:3665448 NCBI chr12:7,709,233...7,718,925
Ensembl chr12:7,709,312...7,718,923
JBrowse link
G Xdh xanthine dehydrogenase involved_in IDA
IEA
ISO
PMID:3443108
GO_REF:0000107
(PMID:1619276)
(MGI:49329|PMID:1590774), (MGI:6306257|PMID:30936145)
Ensembl
RGD
PMID:1590774 PMID:1619276 PMID:30936145 PMID:232638 PMID:3443108 GO_REF:0000107 MGI:49329 MGI:6306257, RGD:13210503, RGD:42721989 NCBI chr 6:21,530,463...21,592,172
Ensembl chr 6:21,530,113...21,592,268
JBrowse link
purine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in ISO
IEA
(PMID:11988088)
GO_REF:0000107
RGD
Ensembl
PMID:11988088 GO_REF:0000107 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982
JBrowse link
G Uox urate oxidase TAS RGD PMID:3182808 RGD:730101 NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
JBrowse link
pyrimidine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crmp1 collapsin response mediator protein 1 NOT|involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:73,509,933...73,556,192
Ensembl chr14:73,509,933...73,556,177
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase acts_upstream_of_or_within
involved_in
IDA
ISO
(MGI:2657070|PMID:12651209)
(PMID:11988088)
RGD PMID:11988088 PMID:12651209 PMID:1629785 MGI:2657070, RGD:1599794 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982
JBrowse link
G Dpys dihydropyrimidinase involved_in IBA
ISO
PMID:21873635
(PMID:9718352)
RGD PMID:9718352 PMID:21873635 RGD:13792537 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231
JBrowse link
G Dpysl2 dihydropyrimidinase-like 2 NOT|involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:41,005,551...41,111,724
Ensembl chr15:41,005,551...41,111,829
JBrowse link
G Dpysl3 dihydropyrimidinase-like 3 NOT|involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:35,374,429...35,480,462
Ensembl chr18:35,377,181...35,480,157
JBrowse link
G Dpysl4 dihydropyrimidinase-like 4 NOT|involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:193,883,039...193,898,916
Ensembl chr 1:193,883,106...193,898,914
JBrowse link
G Dpysl5 dihydropyrimidinase-like 5 NOT|involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:25,575,104...25,659,422
Ensembl chr 6:25,575,104...25,659,422
JBrowse link
G LOC103692570 dihydropyrimidinase-related protein 5-like NOT|involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
thymine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh6a1 aldehyde dehydrogenase 6 family, member A1 involved_in IDA
IEA
ISO
IBA
GO_REF:0000107
(PMID:23835272)
PMID:21873635
Ensembl
RGD
PMID:23835272 PMID:2768248 PMID:21873635 GO_REF:0000107, RGD:1599052, RGD:13792537 NCBI chr 6:104,077,975...104,098,636
Ensembl chr 6:104,077,979...104,098,656
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase involved_in ISO
IEA
IBA
(PMID:10410956)
GO_REF:0000002
GO_REF:0000107
PMID:21873635
RGD
InterPro
Ensembl
PMID:10410956 PMID:21873635 GO_REF:0000002 GO_REF:0000107, RGD:13792537 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982
JBrowse link
G Dpys dihydropyrimidinase involved_in IDA PMID:8307005 UniProt PMID:8307005 RGD:1624990 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231
JBrowse link
uracil catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IBA
IEA
ISS
ISO
PMID:21873635
GO_REF:0000002
GO_REF:0000024
GO_REF:0000107
(PMID:1512248), (PMID:18075467)
InterPro
UniProt
Ensembl
RGD
PMID:1512248 PMID:18075467 PMID:21873635 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982
JBrowse link
G Dpys dihydropyrimidinase involved_in IDA
ISO
PMID:8307005
(PMID:10410956), (PMID:18075467)
RGD PMID:10410956 PMID:18075467 PMID:8307005 RGD:1624990 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231
JBrowse link
xanthine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uox urate oxidase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in ISO (MGI:3665448|PMID:16462750) RGD PMID:16462750 MGI:3665448 NCBI chr12:7,709,233...7,718,925
Ensembl chr12:7,709,312...7,718,923
JBrowse link
G Xdh xanthine dehydrogenase involved_in ISO
IDA
IBA
ISS
IEA
(PMID:17301077), (PMID:8670112)
PMID:3443108
PMID:21873635
(MGI:49329|PMID:1590774)
PMID:15878860
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:1590774 PMID:8670112 PMID:17301077 PMID:3443108 PMID:21873635 More... GO_REF:0000024 GO_REF:0000107 MGI:49329, RGD:42721989, RGD:13792537, RGD:8553512 NCBI chr 6:21,530,463...21,592,172
Ensembl chr 6:21,530,113...21,592,268
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19492
    metabolic process 11797
      organic substance metabolic process 11337
        organonitrogen compound metabolic process 6802
          nucleobase metabolic process 45
            nucleobase catabolic process 13
              purine nucleobase catabolic process + 5
              pyrimidine nucleobase catabolic process + 9
Path 2
Term Annotations click to browse term
  biological_process 19492
    cellular process 18340
      cellular metabolic process 10717
        cellular nitrogen compound metabolic process 6561
          nucleobase-containing compound metabolic process 5378
            nucleobase-containing small molecule metabolic process 577
              nucleobase metabolic process 45
                nucleobase catabolic process 13
                  purine nucleobase catabolic process + 5
                  pyrimidine nucleobase catabolic process + 9
paths to the root