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ONTOLOGY REPORT - ANNOTATIONS


Term:carbon catabolite regulation of transcription
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Accession:GO:0045990 term browser browse the term
Definition:A transcription regulation process in which the presence of one carbon source leads to the modulation of the frequency, rate, or extent of transcription of specific genes involved in the metabolism of other carbon sources.
Synonyms:exact_synonym: regulation of transcription by carbon catabolites



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negative regulation of transcription from RNA polymerase II promoter by glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 involved_in ISO (MGI:5142372|PMID:11875061) RGD PMID:11875061 MGI:5142372 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326
JBrowse link
positive regulation of transcription by glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srf serum response factor IMP RGD PMID:20655308 RGD:5131625 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
JBrowse link
positive regulation of transcription from RNA polymerase II promoter by galactose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncoa1 nuclear receptor coactivator 1 involved_in ISO (PMID:10207113)
(MGI:5297786|PMID:16723356)
RGD PMID:10207113 PMID:16723356 MGI:5297786 NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664
JBrowse link
positive regulation of transcription from RNA polymerase II promoter by glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 involved_in ISO (MGI:5142372|PMID:11875061) RGD PMID:11875061 MGI:5142372 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326
JBrowse link
G Usf1 upstream transcription factor 1 involved_in ISO (PMID:7852331)
(MGI:1330677|PMID:9890958)
RGD PMID:7852331 PMID:9890958 MGI:1330677 NCBI chr13:83,845,230...83,854,875
Ensembl chr13:83,822,035...83,854,885
JBrowse link
G Usf2 upstream transcription factor 2, c-fos interacting involved_in ISO
IEA
(PMID:7852331)
GO_REF:0000107
(MGI:1330677|PMID:9890958)
RGD
Ensembl
PMID:7852331 PMID:9890958 GO_REF:0000107 MGI:1330677 NCBI chr 1:86,174,703...86,185,942
Ensembl chr 1:86,174,703...86,185,617
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20050
    response to stimulus 10559
      response to chemical 6080
        response to nutrient 321
          cellular response to nutrient 71
            carbon catabolite regulation of transcription 5
              carbon catabolite activation of transcription + 5
              carbon catabolite regulation of transcription from RNA polymerase II promoter + 4
              carbon catabolite repression of transcription + 0
Path 2
Term Annotations click to browse term
  biological_process 20050
    metabolic process 12312
      cellular metabolic process 10357
        cellular aromatic compound metabolic process 6021
          nucleobase-containing compound metabolic process 5782
            nucleic acid metabolic process 5189
              RNA metabolic process 4595
                RNA biosynthetic process 3529
                  nucleic acid-templated transcription 3513
                    DNA-templated transcription 3511
                      regulation of DNA-templated transcription 3369
                        carbon catabolite regulation of transcription 5
                          carbon catabolite activation of transcription + 5
                          carbon catabolite regulation of transcription from RNA polymerase II promoter + 4
                          carbon catabolite repression of transcription + 0
paths to the root