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ONTOLOGY REPORT - ANNOTATIONS

Term:carbon catabolite regulation of transcription
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Accession:GO:0045990 term browser browse the term
Definition:A transcription regulation process in which the presence of one carbon source leads to the modulation of the frequency, rate, or extent of transcription of specific genes involved in the metabolism of other carbon sources.
Synonyms:exact_synonym: regulation of transcription by carbon catabolites


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negative regulation of transcription from RNA polymerase II promoter by glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 involved_in ISO (MGI:5142372|PMID:11875061) RGD PMID:11875061 MGI:5142372 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Sik2 salt-inducible kinase 2 involved_in ISO (MGI:5000207|PMID:21084751) RGD PMID:21084751 MGI:5000207 NCBI chr 8:51,225,543...51,325,343
Ensembl chr 8:51,225,543...51,325,415 		JBrowse link
positive regulation of transcription by glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srf serum response factor IMP RGD PMID:20655308 RGD:5131625 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
positive regulation of transcription from RNA polymerase II promoter by galactose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncoa1 nuclear receptor coactivator 1 involved_in ISO (PMID:10207113) RGD PMID:10207113 NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664 		JBrowse link
positive regulation of transcription from RNA polymerase II promoter by glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 involved_in ISO (MGI:5142372|PMID:11875061) RGD PMID:11875061 MGI:5142372 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Kat2b lysine acetyltransferase 2B involved_in ISO (MGI:5000207|PMID:21084751) RGD PMID:21084751 MGI:5000207 NCBI chr 9:6,562,525...6,667,064
Ensembl chr 9:6,562,288...6,667,064 		JBrowse link
G Mlx MAX dimerization protein MLX involved_in ISO (MGI:3040568|PMID:14742444) RGD PMID:14742444 MGI:3040568 NCBI chr10:86,019,216...86,024,326
Ensembl chr10:86,019,588...86,032,350 		JBrowse link
G Mlxipl MLX interacting protein-like involved_in ISO
IEA		 MGI:1339639 (MGI:3040568|PMID:14742444), (MGI:3057069|PMID:15496471), (MGI:5000150|PMID:21471514)
GO_REF:0000107		 RGD
Ensembl		 PMID:14742444 PMID:15496471 PMID:21471514 GO_REF:0000107 MGI:3040568 MGI:3057069 MGI:5000150 NCBI chr12:21,541,608...21,577,120
Ensembl chr12:21,543,576...21,577,112 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in ISO
IEA		 (MGI:5000150|PMID:21471514)
GO_REF:0000107		 RGD
Ensembl		 PMID:21471514 GO_REF:0000107 MGI:5000150 NCBI chr  X:66,771,278...66,816,148
Ensembl chr  X:66,771,349...66,816,146 		JBrowse link
G Usf1 upstream transcription factor 1 involved_in ISO (PMID:7852331)
(MGI:1330677|PMID:9890958)		 RGD PMID:7852331 PMID:9890958 MGI:1330677 NCBI chr13:83,845,230...83,854,875
Ensembl chr13:83,822,035...83,854,885 		JBrowse link
G Usf2 upstream transcription factor 2, c-fos interacting involved_in ISO
IEA		 (PMID:7852331)
GO_REF:0000107
(MGI:1330677|PMID:9890958)		 RGD
Ensembl		 PMID:7852331 PMID:9890958 GO_REF:0000107 MGI:1330677 NCBI chr 1:86,174,703...86,185,942
Ensembl chr 1:86,174,703...86,185,617 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19553
    cellular process 18233
      cellular response to stimulus 8778
        cellular response to chemical stimulus 3238
          cellular response to nutrient 79
            carbon catabolite regulation of transcription 10
              carbon catabolite activation of transcription + 9
              carbon catabolite regulation of transcription from RNA polymerase II promoter + 9
              carbon catabolite repression of transcription + 0
Path 2
Term Annotations click to browse term
  biological_process 19553
    metabolic process 11538
      cellular metabolic process 10124
        cellular aromatic compound metabolic process 5773
          nucleobase-containing compound metabolic process 5539
            nucleic acid metabolic process 4966
              RNA metabolic process 4373
                RNA biosynthetic process 3305
                  DNA-templated transcription 3282
                    regulation of DNA-templated transcription 3133
                      carbon catabolite regulation of transcription 10
                        carbon catabolite activation of transcription + 9
                        carbon catabolite regulation of transcription from RNA polymerase II promoter + 9
                        carbon catabolite repression of transcription + 0
paths to the root