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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of nucleotide metabolic process
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Accession:GO:0045981 term browser browse the term
Definition:Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nucleotides.
Synonyms:exact_synonym: positive regulation of nucleotide metabolism;   up regulation of nucleotide metabolic process;   upregulation of nucleotide metabolic process
 narrow_synonym: activation of nucleotide metabolic process;   stimulation of nucleotide metabolic process



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positive regulation of ATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy10 adenylate cyclase 10 IMP RGD PMID:31172217 RGD:329403053 NCBI chr13:80,280,595...80,366,939
Ensembl chr13:77,768,468...77,833,951
JBrowse link
G Bcl2l1 Bcl2-like 1 involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 3:161,713,777...161,764,844
Ensembl chr 3:141,253,523...141,303,479
Ensembl chr 1:141,253,523...141,303,479
JBrowse link
G Eno1 enolase 1 involved_in ISO UniProtKB:Q01986 (PMID:15459207) RGD PMID:15459207 NCBI chr 5:166,002,867...166,014,252
Ensembl chr 5:160,719,951...160,731,336
Ensembl chr 3:160,719,951...160,731,336
JBrowse link
G Hnf1a HNF1 homeobox A IMP RGD PMID:20841353 RGD:150540305 NCBI chr12:47,299,171...47,333,457
Ensembl chr12:41,645,587...41,672,104
JBrowse link
G Il4 interleukin 4 involved_in ISO (PMID:29061364) RGD PMID:29061364 NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 involved_in IMP
IGI
PMID:15459207 CAFA PMID:15459207 PMID:15459207 RGD:12793039, RGD:12793039 NCBI chr 8:73,578,747...73,650,184
Ensembl chr 8:64,683,449...64,755,147
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor IMP RGD PMID:22629444 RGD:7240532 NCBI chr 7:95,483,105...95,488,031
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G Ndufc2 NADH:ubiquinone oxidoreductase subunit C2 IMP RGD PMID:26888427 RGD:11040458 NCBI chr 1:161,122,370...161,129,413
Ensembl chr 1:151,711,901...151,718,189
JBrowse link
G Pid1 phosphotyrosine interaction domain containing 1 involved_in ISO (PMID:21080215) RGD PMID:21080215 NCBI chr 9:92,732,471...92,951,168
Ensembl chr 9:85,284,335...85,503,044
JBrowse link
G Ppara peroxisome proliferator activated receptor alpha acts_upstream_of ISO (PMID:31574452) RGD PMID:31574452 NCBI chr 7:118,712,261...118,780,723
Ensembl chr 7:116,832,756...116,895,346
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase IMP RGD PMID:24096089 RGD:10413842 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:48,690,556...49,882,555
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (PMID:24747689) RGD PMID:24747689 NCBI chr20:25,305,953...25,328,000
Ensembl chr20:25,306,917...25,329,260
JBrowse link
G Slc25a12 solute carrier family 25 member 12 IMP RGD PMID:19764902 RGD:13628741 NCBI chr 3:76,504,868...76,599,536
Ensembl chr 3:56,097,269...56,192,100
JBrowse link
G Stat3 signal transducer and activator of transcription 3 IMP RGD PMID:23590160 RGD:8694322 NCBI chr10:86,311,528...86,363,513
Ensembl chr10:85,811,218...85,863,057
JBrowse link
G Tafazzin tafazzin, phospholipid-lysophospholipid transacylase IMP RGD PMID:20348225 RGD:13432160 NCBI chr  X:157,216,826...157,230,524
Ensembl chr  X:152,065,609...152,074,001
JBrowse link
G Tmsb4x thymosin beta 4, X-linked involved_in ISO (PMID:21106936) RGD PMID:21106936 NCBI chr  X:30,761,611...30,763,612
Ensembl chr  X:27,128,610...27,146,667
Ensembl chr10:27,128,610...27,146,667
JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:28802038) RGD PMID:28802038 NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170
JBrowse link
G Vcp valosin-containing protein involved_in ISO (PMID:23498975) RGD PMID:23498975 NCBI chr 5:62,005,984...62,025,387
Ensembl chr 5:57,210,168...57,229,571
JBrowse link
positive regulation of ATP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bend3 BEN domain containing 3 involved_in ISO (PMID:28977671) RGD PMID:28977671 NCBI chr20:48,562,383...48,599,194
Ensembl chr20:46,979,831...47,014,671
JBrowse link
positive regulation of glycolytic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G App amyloid beta precursor protein involved_in ISO
IEA
UniProtKB:P49768 (PMID:29061364)
GO_REF:0000107
RGD
Ensembl
PMID:29061364 GO_REF:0000107 NCBI chr11:37,506,207...37,724,351
Ensembl chr11:24,019,778...24,236,561
JBrowse link
G Arnt aryl hydrocarbon receptor nuclear translocator acts_upstream_of
involved_in
ISO
IEA
(PMID:8089148)
GO_REF:0000107
RGD
Ensembl
PMID:8089148 GO_REF:0000107 NCBI chr 2:185,686,703...185,745,546
Ensembl chr 2:182,997,736...183,056,580
JBrowse link
G Esrrb estrogen-related receptor beta involved_in IDA PMID:24481529 BHF-UCL PMID:24481529 RGD:12910990 NCBI chr 6:111,738,662...111,894,087
Ensembl chr 6:106,008,095...106,160,791
JBrowse link
G Gck glucokinase IDA RGD PMID:17553851 RGD:2301905 NCBI chr14:84,999,019...85,041,098
Ensembl chr14:80,785,060...80,826,995
JBrowse link
G Gpd1 glycerol-3-phosphate dehydrogenase 1 acts_upstream_of_or_within ISO MGI:3692960 (PMID:11147825) RGD PMID:11147825 NCBI chr 7:132,722,982...132,730,373
Ensembl chr 7:130,844,138...130,851,529
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of
involved_in
ISO
IEA
(PMID:8089148)
GO_REF:0000107
RGD
Ensembl
PMID:8089148 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Htr2a 5-hydroxytryptamine receptor 2A acts_upstream_of_or_within ISO (PMID:17408640) RGD PMID:17408640 NCBI chr15:56,360,647...56,428,703
Ensembl chr15:49,950,804...50,020,928
JBrowse link
G Ifng interferon gamma involved_in ISO (PMID:29061364) RGD PMID:29061364 NCBI chr 7:55,789,180...55,793,216
Ensembl chr 7:53,903,337...53,907,375
JBrowse link
G Igf1 insulin-like growth factor 1 involved_in ISO
IEA
(PMID:7688386)
GO_REF:0000107
RGD
Ensembl
PMID:7688386 GO_REF:0000107 NCBI chr 7:24,169,608...24,249,446
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
G Ins2 insulin 2 involved_in ISO (PMID:381941), (PMID:7688386) RGD PMID:381941 PMID:7688386 NCBI chr 1:207,272,738...207,421,998
Ensembl chr 1:197,843,281...197,864,775
JBrowse link
G Insr insulin receptor involved_in ISO (PMID:7693131) RGD PMID:7693131 NCBI chr12:5,991,135...6,129,275
Ensembl chr12:1,197,100...1,330,883
JBrowse link
G Kat2b lysine acetyltransferase 2B involved_in ISO (PMID:21084751) RGD PMID:21084751 NCBI chr 9:6,799,101...6,903,616
Ensembl chr 9:6,562,288...6,667,064
JBrowse link
G Mif macrophage migration inhibitory factor IMP RGD PMID:11086030 RGD:1642010 NCBI chr20:12,767,138...12,791,222
Ensembl chr20:12,790,902...12,799,504
Ensembl chr 4:12,790,902...12,799,504
JBrowse link
G Mlx MAX dimerization protein MLX involved_in ISO (PMID:14742444) RGD PMID:14742444 NCBI chr10:86,519,517...86,524,607
Ensembl chr10:86,019,588...86,032,350
JBrowse link
G Mlxipl MLX interacting protein-like involved_in ISO
IEA
(PMID:19995986)
(PMID:14742444), (PMID:15118080)
GO_REF:0000107
RGD
Ensembl
PMID:14742444 PMID:15118080 PMID:19995986 GO_REF:0000107 NCBI chr12:27,178,158...27,213,675
Ensembl chr12:21,543,576...21,577,112
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor IMP RGD PMID:22842522 RGD:7207891 NCBI chr 7:95,483,105...95,488,031
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G P2rx7 purinergic receptor P2X 7 involved_in ISO (PMID:22898868) RGD PMID:22898868 NCBI chr12:39,550,531...39,594,984
Ensembl chr12:33,879,745...33,934,619
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in IDA PMID:11069105 UniProt PMID:11069105 RGD:8554193 NCBI chr 2:55,967,766...56,003,450
Ensembl chr 2:54,240,137...54,275,978
JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IDA PMID:11069105 UniProt PMID:11069105 RGD:8554193 NCBI chr 5:125,036,945...125,109,010
Ensembl chr 5:119,813,226...119,879,543
JBrowse link
G Prxl2c peroxiredoxin like 2C involved_in ISO (PMID:29901208) RGD PMID:29901208 NCBI chr17:817,932...849,965
Ensembl chr17:812,213...844,075
JBrowse link
G Psen1 presenilin 1 involved_in ISO UniProtKB:P05067 (PMID:29061364) RGD PMID:29061364 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650
JBrowse link
G Slc4a4 solute carrier family 4 member 4 acts_upstream_of
involved_in
ISO
IEA
UniProtKB:Q9JK62 (PMID:21976511)
GO_REF:0000107
RGD
Ensembl
PMID:21976511 GO_REF:0000107 NCBI chr14:19,125,394...19,577,379
Ensembl chr14:18,845,159...19,272,883
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase involved_in ISO (PMID:35263589) RGD PMID:35263589 NCBI chr 3:166,511,616...166,559,463
Ensembl chr 3:146,091,841...146,139,476
JBrowse link
G Uchl1 ubiquitin C-terminal hydrolase L1 involved_in ISO (PMID:34244144) RGD PMID:34244144 NCBI chr14:41,838,859...41,849,743
Ensembl chr14:41,485,031...41,495,590
JBrowse link
G Zbtb20 zinc finger and BTB domain containing 20 involved_in ISO (PMID:28327662) RGD PMID:28327662 NCBI chr11:70,558,010...71,297,039
Ensembl chr11:57,072,880...57,510,210
JBrowse link
positive regulation of glycolytic process through fructose-6-phosphate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pfkfb1 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 involved_in IMP PMID:12230553 FlyBase PMID:12230553 RGD:405650381 NCBI chr  X:22,936,038...22,989,691
Ensembl chr  X:19,508,546...19,562,182
JBrowse link
positive regulation of guanylate cyclase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora2b adenosine A2B receptor acts_upstream_of_or_within ISO MGI:3773754 (PMID:18340377) RGD PMID:18340377 NCBI chr10:47,439,712...47,456,092
Ensembl chr10:46,940,384...46,956,772
JBrowse link
G Guca1a guanylate cyclase activator 1A IDA RGD PMID:12545196 RGD:1599357 NCBI chr 9:21,080,782...21,096,221
Ensembl chr 9:13,588,525...13,598,565
JBrowse link
G Nos3 nitric oxide synthase 3 involved_in ISO (PMID:17502619) RGD PMID:17502619 NCBI chr 4:11,686,088...11,706,604
Ensembl chr 4:10,793,834...10,814,166
JBrowse link
positive regulation of pentose-phosphate shunt term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tigar TP53 induced glycolysis regulatory phosphatase involved_in ISO (PMID:24872551) RGD PMID:24872551 NCBI chr 4:161,613,306...161,632,248
Ensembl chr 4:159,927,139...159,946,029
Ensembl chr 6:159,927,139...159,946,029
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    positive regulation of biological process 6759
      positive regulation of cellular process 6417
        positive regulation of metabolic process 3824
          positive regulation of small molecule metabolic process 187
            positive regulation of nucleotide metabolic process 48
              positive regulation of nucleotide biosynthetic process + 21
              positive regulation of nucleotide catabolic process + 26
              positive regulation of purine nucleotide metabolic process + 48
Path 2
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      metabolic process 12160
        primary metabolic process 10746
          nucleobase-containing compound metabolic process 5944
            nucleobase-containing small molecule metabolic process 729
              nucleoside phosphate metabolic process 694
                nucleotide metabolic process 540
                  regulation of nucleotide metabolic process 102
                    positive regulation of nucleotide metabolic process 48
                      positive regulation of nucleotide biosynthetic process + 21
                      positive regulation of nucleotide catabolic process + 26
                      positive regulation of purine nucleotide metabolic process + 48
paths to the root