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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of nucleobase-containing compound metabolic process
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Accession:GO:0045935 term browser browse the term
Definition:Any cellular process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids.
Synonyms:exact_synonym: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism;   up regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;   upregulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
 narrow_synonym: activation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;   stimulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
 related_synonym: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process


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3'-UTR-mediated mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPEB3 cytoplasmic polyadenylation element binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:103,675,164...103,871,245
Ensembl chr14:103,675,175...103,871,227
JBrowse link
G DHX36 DEAH-box helicase 36 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:94,298,790...94,350,333
Ensembl chr13:94,298,790...94,350,312
JBrowse link
G DND1 DND microRNA-mediated repression inhibitor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:142,384,526...142,387,407
Ensembl chr 2:142,384,532...142,387,199
JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:20805360 RGD:10042974 NCBI chr 8:135,844,492...135,862,633
Ensembl chr 8:135,844,487...135,862,633
JBrowse link
G KHSRP KH-type splicing regulatory protein involved_in ISO (PMID:28275056)
(PMID:16126846)
CACAO
UniProt
PMID:16126846 PMID:28275056 NCBI chr 2:72,656,951...72,668,854
Ensembl chr 2:72,656,951...72,668,964
JBrowse link
G KLHL17 kelch like family member 17 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:63,320,898...63,328,093
Ensembl chr 6:63,322,184...63,336,139
JBrowse link
G MOV10 Mov10 RISC complex RNA helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:107,738,089...107,763,873
Ensembl chr 4:107,738,112...107,763,596
JBrowse link
G PLEKHN1 pleckstrin homology domain containing N1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:63,328,054...63,336,140
Ensembl chr 6:63,322,314...63,336,140
JBrowse link
G QKI QKI, KH domain containing RNA binding acts_upstream_of_or_within ISO (MGI:5316962|PMID:20631256) MGI PMID:20631256 MGI:5316962 NCBI chr 1:4,732,575...4,883,386
Ensembl chr 1:4,735,513...4,883,768
JBrowse link
G RBM24 RNA binding motif protein 24 involved_in ISO (PMID:24375645) UniProt PMID:24375645 NCBI chr 7:13,126,518...13,139,504 JBrowse link
G RC3H1 ring finger and CCCH-type domains 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:116,204,807...116,292,455
Ensembl chr 9:116,209,094...116,292,366
JBrowse link
G TARDBP TAR DNA binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:71,213,584...71,227,707
Ensembl chr 6:71,213,852...71,227,704
JBrowse link
G TRIM71 tripartite motif containing 71 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:18,762,043...18,835,788
Ensembl chr13:18,761,445...18,830,563
JBrowse link
G UPF1 UPF1 RNA helicase and ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:58,975,013...59,013,546
Ensembl chr 2:58,975,015...59,013,495
JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:93,541,334...93,551,200
Ensembl chr 6:93,541,334...93,551,195
JBrowse link
G ZC3H12D zinc finger CCCH-type containing 12D involved_in ISO (MGI:5707103|PMID:26134560) UniProt PMID:26134560 MGI:5707103 NCBI chr 1:16,463,532...16,498,974
Ensembl chr 1:16,465,252...16,498,971
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:48,063,732...48,066,235
Ensembl chr 6:48,052,137...48,066,257
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:92,490,069...92,495,864
Ensembl chr 7:92,490,011...92,495,574
JBrowse link
G ZFP36L2 ZFP36 ring finger protein like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:97,200,395...97,203,094
Ensembl chr 3:97,200,406...97,204,700
JBrowse link
chromatin-mediated maintenance of transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDCA4 cell division cycle associated 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635
G CHEK1 checkpoint kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:52,759,224...52,790,878
Ensembl chr 9:52,726,885...52,790,706
JBrowse link
G ELOF1 elongation factor 1 homolog involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:70,192,508...70,199,926
Ensembl chr 2:70,193,725...70,199,837
JBrowse link
G NR3C1 nuclear receptor subfamily 3 group C member 1 involved_in ISO PMID:12917342 UniProt PMID:12917342 RGD:8553888 NCBI chr 2:144,822,937...144,956,451
Ensembl chr 2:144,822,937...144,956,095
JBrowse link
G PABPC1L poly(A) binding protein cytoplasmic 1 like involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5688228|PMID:26134869) Ensembl
MGI
PMID:26134869 GO_REF:0000107 MGI:5688228 NCBI chr17:47,321,259...47,351,905
Ensembl chr17:47,321,380...47,351,106
JBrowse link
G PADI2 peptidyl arginine deiminase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:75,696,476...75,755,977
Ensembl chr 6:75,696,484...75,755,892
JBrowse link
G SERTAD1 SERTA domain containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:48,698,881...48,702,448
Ensembl chr 6:48,698,849...48,702,400
JBrowse link
G SERTAD2 SERTA domain containing 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:77,192,570...77,317,327
Ensembl chr 3:77,192,716...77,317,327
JBrowse link
G SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:15,992,348...16,005,778
Ensembl chr 5:15,992,459...16,005,778
JBrowse link
G ZMIZ1 zinc finger MIZ-type containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:81,409,067...81,647,808
Ensembl chr14:81,455,127...81,647,949
JBrowse link
G ZMIZ2 zinc finger MIZ-type containing 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:50,579,650...50,598,921
Ensembl chr18:50,579,653...50,598,653
JBrowse link
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807625|PMID:18625844) Ensembl
MGI
PMID:18625844 GO_REF:0000107 MGI:3807625 NCBI chr17:4,934,379...4,950,093
Ensembl chr17:4,933,453...4,950,346
JBrowse link
G DCP1A decapping mRNA 1A involved_in IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr13:35,392,592...35,455,639
Ensembl chr13:35,392,510...35,479,703
JBrowse link
G DCP1B decapping mRNA 1B involved_in IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 5:68,922,086...68,976,280
Ensembl chr 5:68,923,903...68,975,957
JBrowse link
G DCP2 decapping mRNA 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:116,736,800...116,804,693
Ensembl chr 2:116,726,243...116,804,648
JBrowse link
G DCPS decapping enzyme, scavenger involved_in IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 9:53,400,750...53,437,161
Ensembl chr 9:53,400,753...53,437,548
JBrowse link
G LSM1 LSM1 homolog, mRNA degradation associated involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:48,348,653...48,360,004
Ensembl chr15:48,347,864...48,385,464
JBrowse link
G NOCT nocturnin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807625|PMID:18625844) Ensembl
MGI
PMID:18625844 GO_REF:0000107 MGI:3807625 NCBI chr 8:87,885,411...87,909,231
Ensembl chr 8:87,885,412...87,909,655
JBrowse link
G PAN3 poly(A) specific ribonuclease subunit PAN3 acts_upstream_of_or_within ISO (MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:3807625 NCBI chr11:5,487,019...5,614,458
Ensembl chr11:5,486,889...5,614,454
JBrowse link
G PATL1 PAT1 homolog 1, processing body mRNA decay factor involved_in IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 2:11,826,816...11,857,699
Ensembl chr 2:11,827,799...11,857,699
JBrowse link
G SPG11 SPG11 vesicle trafficking associated, spatacsin involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:126,890,464...126,998,014
Ensembl chr 1:126,890,892...126,998,059
JBrowse link
exonucleolytic catabolism of deadenylated mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT6 CCR4-NOT transcription complex subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:78,131,236...78,202,518
Ensembl chr 2:78,124,269...78,202,535
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr17:4,934,379...4,950,093
Ensembl chr17:4,933,453...4,950,346
JBrowse link
G CNOT8 CCR4-NOT transcription complex subunit 8 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr16:68,329,785...68,352,020
Ensembl chr16:68,313,884...68,350,261
JBrowse link
G EXOSC2 exosome component 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:270,748,534...270,757,717
Ensembl chr 1:270,748,537...270,758,130
JBrowse link
G EXOSC3 exosome component 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:238,536,341...238,541,756
Ensembl chr 1:238,536,343...238,541,333
JBrowse link
G EXOSC5 exosome component 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:49,373,378...49,381,875
Ensembl chr 6:49,373,378...49,382,180
JBrowse link
G EXOSC7 exosome component 7 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:28,176,806...28,206,435
Ensembl chr13:28,176,787...28,208,935
JBrowse link
G EXOSC8 exosome component 8 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:12,817,081...12,825,847
Ensembl chr11:12,817,110...12,825,847
JBrowse link
G EXOSC9 exosome component 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:102,265,656...102,278,179
Ensembl chr 8:102,264,470...102,303,842
JBrowse link
mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELF1 CUGBP Elav-like family member 1 involved_in ISO PMID:30508596 ARUK-UCL PMID:30508596 RGD:38501076 NCBI chr 2:15,066,518...15,161,478
Ensembl chr 2:15,066,537...15,187,797
JBrowse link
G CNOT6L CCR4-NOT transcription complex subunit 6 like acts_upstream_of_or_within ISO (MGI:3828348|PMID:17452450) MGI PMID:17452450 MGI:3828348 NCBI chr 8:73,191,721...73,335,779
Ensembl chr 8:73,185,999...73,335,741
JBrowse link
G FTO FTO alpha-ketoglutarate dependent dioxygenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:31,177,112...31,564,674
Ensembl chr 6:31,174,569...31,564,707
JBrowse link
G GIGYF2 GRB10 interacting GYF protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:133,180,638...133,313,307
Ensembl chr15:133,180,663...133,313,320
JBrowse link
G HNRNPR heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:15798208 RGD:9854643 NCBI chr 6:81,203,067...81,239,823
Ensembl chr 6:81,184,833...81,239,135
JBrowse link
G METTL14 methyltransferase 14, N6-adenosine-methyltransferase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:105,019,539...105,053,603
Ensembl chr 8:105,015,420...105,053,563
JBrowse link
G METTL16 methyltransferase 16, N6-methyladenosine involved_in ISO (MGI:6114846|PMID:29262316) UniProt PMID:29262316 MGI:6114846 NCBI chr12:48,491,254...48,567,253
Ensembl chr12:48,499,240...48,561,337
JBrowse link
G METTL3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (MGI:5559905|PMID:24394384), (MGI:5621227|PMID:25569111), (MGI:5621254|PMID:25456834), (MGI:5927282|PMID:28965759), (MGI:6094929|PMID:28792938), (MGI:6095345|PMID:28637692) UniProt PMID:24394384 PMID:25456834 PMID:25569111 PMID:28637692 PMID:28792938 PMID:28965759 MGI:5559905 MGI:5621227 MGI:5621254 MGI:5927282 MGI:6094929 MGI:6095345 NCBI chr 7:77,661,945...77,679,459
Ensembl chr 7:77,662,058...77,695,948
JBrowse link
G PUM1 pumilio RNA binding family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:87,546,388...87,687,483
Ensembl chr 6:87,547,320...87,687,442
JBrowse link
G RBM24 RNA binding motif protein 24 involved_in ISO (PMID:29104163) UniProt PMID:29104163 NCBI chr 7:13,126,518...13,139,504 JBrowse link
G RIDA reactive intermediate imine deaminase A homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:38,656,270...38,665,863
Ensembl chr 4:38,656,319...38,670,999
JBrowse link
G ROCK1 Rho associated coiled-coil containing protein kinase 1 involved_in ISO (MGI:6271078|PMID:29353861) ARUK-UCL PMID:29353861 MGI:6271078 NCBI chr 6:106,163,899...106,314,998
Ensembl chr 6:106,163,903...106,314,944
JBrowse link
G ROCK2 Rho associated coiled-coil containing protein kinase 2 involved_in ISO (MGI:6271078|PMID:29353861) ARUK-UCL PMID:29353861 MGI:6271078 NCBI chr 3:125,353,063...125,493,368
Ensembl chr 3:125,353,119...125,491,963
JBrowse link
G YTHDF1 YTH N6-methyladenosine RNA binding protein 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:62,329,302...62,341,312
Ensembl chr17:62,329,302...62,341,509
JBrowse link
G YTHDF2 YTH N6-methyladenosine RNA binding protein 2 involved_in IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 6:85,717,147...85,756,750
Ensembl chr 6:85,716,917...85,751,583
JBrowse link
G YTHDF3 YTH N6-methyladenosine RNA binding protein 3 involved_in IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 4:70,887,101...70,928,839
Ensembl chr 4:70,887,103...70,928,808
JBrowse link
negative regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G METTL16 methyltransferase 16, N6-methyladenosine involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:48,491,254...48,567,253
Ensembl chr12:48,499,240...48,561,337
JBrowse link
negative regulation of chromatin silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATAD2 ATPase family AAA domain containing 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:16,012,278...16,082,343
Ensembl chr 4:16,012,561...16,082,638
JBrowse link
G ATAD2B ATPase family AAA domain containing 2B involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:114,722,225...114,843,705
Ensembl chr 3:114,722,321...114,846,644
JBrowse link
G H1-3 H1.3 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 7:20,862,942...20,882,693 JBrowse link
G H1-4 H1.4 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 7:20,819,639...20,854,590 JBrowse link
G H1-6 H1.6 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,774,135...20,777,244 JBrowse link
G H1FOO oocyte-specific H1 histone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:68,921,491...68,943,061
Ensembl chr13:68,938,024...68,942,744
JBrowse link
G LOC100510904 histone H1.0 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,951...10,041,080
JBrowse link
negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:48,156,835...48,204,701
Ensembl chr14:48,156,727...48,204,926
JBrowse link
negative regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TENT4A terminal nucleotidyltransferase 4A involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chr16:75,217,212...75,259,805
Ensembl chr16:75,217,213...75,260,149
JBrowse link
G TENT4B terminal nucleotidyltransferase 4B involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chr 6:34,603,157...34,669,779
Ensembl chr 6:34,597,636...34,759,216
JBrowse link
G TOB1 transducer of ERBB2, 1 involved_in ISO (PMID:18377426) UniProt PMID:18377426 NCBI chr12:27,116,579...27,119,906
Ensembl chr12:27,115,824...27,119,928
JBrowse link
nuclear polyadenylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOSC7 exosome component 7 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:28,176,806...28,206,435
Ensembl chr13:28,176,787...28,208,935
JBrowse link
G EXOSC8 exosome component 8 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:12,817,081...12,825,847
Ensembl chr11:12,817,110...12,825,847
JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:85,595,356...85,639,665
Ensembl chr 3:85,595,392...85,639,690
JBrowse link
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT6L CCR4-NOT transcription complex subunit 6 like involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3828348|PMID:17452450) Ensembl
MGI
PMID:17452450 GO_REF:0000107 MGI:3828348 NCBI chr 8:73,191,721...73,335,779
Ensembl chr 8:73,185,999...73,335,741
JBrowse link
G PDE12 phosphodiesterase 12 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:39,395,517...39,402,653
Ensembl chr13:39,395,541...39,402,650
JBrowse link
G POLR2D RNA polymerase II subunit D involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:59,479,631...59,495,975
Ensembl chr15:59,479,538...59,498,178
JBrowse link
G RC3H1 ring finger and CCCH-type domains 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:116,204,807...116,292,455
Ensembl chr 9:116,209,094...116,292,366
JBrowse link
G RC3H2 ring finger and CCCH-type domains 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:263,769,403...263,822,101
Ensembl chr 1:263,772,168...263,822,104
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in
acts_upstream_of_or_within
ISO (PMID:23644599)
(MGI:3589099|PMID:15814898)
UniProt
MGI
PMID:15814898 PMID:23644599 MGI:3589099 NCBI chr 6:48,063,732...48,066,235
Ensembl chr 6:48,052,137...48,066,257
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3589099|PMID:15814898) Ensembl
MGI
PMID:15814898 GO_REF:0000107 MGI:3589099 NCBI chr 7:92,490,069...92,495,864
Ensembl chr 7:92,490,011...92,495,574
JBrowse link
G ZFP36L2 ZFP36 ring finger protein like 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3589099|PMID:15814898) Ensembl
MGI
PMID:15814898 GO_REF:0000107 MGI:3589099 NCBI chr 3:97,200,395...97,203,094
Ensembl chr 3:97,200,406...97,204,700
JBrowse link
nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT3 CCR4-NOT transcription complex subunit 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:55,975,628...55,993,140
Ensembl chr 6:55,973,591...55,991,287
JBrowse link
G CNOT6 CCR4-NOT transcription complex subunit 6 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 2:78,131,236...78,202,518
Ensembl chr 2:78,124,269...78,202,535
JBrowse link
G CNOT6L CCR4-NOT transcription complex subunit 6 like involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:73,191,721...73,335,779
Ensembl chr 8:73,185,999...73,335,741
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807625|PMID:18625844) Ensembl
MGI
PMID:18625844 GO_REF:0000107 MGI:3807625 NCBI chr17:4,934,379...4,950,093
Ensembl chr17:4,933,453...4,950,346
JBrowse link
G MLH1 mutL homolog 1 acts_upstream_of_or_within ISO (MGI:1934053|PMID:11337385) MGI PMID:11337385 MGI:1934053 NCBI chr13:21,791,276...21,877,789
Ensembl chr13:21,791,201...21,877,757
JBrowse link
G PAN2 poly(A) specific ribonuclease subunit PAN2 involved_in IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr 5:21,712,222...21,730,528
Ensembl chr 5:21,712,247...21,748,950
JBrowse link
G PAN3 poly(A) specific ribonuclease subunit PAN3 involved_in IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr11:5,487,019...5,614,458
Ensembl chr11:5,486,889...5,614,454
JBrowse link
G PARN poly(A)-specific ribonuclease involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3785219|PMID:18337750)
GO_Central
MGI
PMID:18337750 PMID:21873635 MGI:3785219 NCBI chr 3:28,616,808...28,802,506
Ensembl chr 3:28,612,269...28,802,505
JBrowse link
G PNLDC1 PARN like ribonuclease domain containing exonuclease 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:7,560,084...7,580,062
Ensembl chr 1:7,560,241...7,579,254
JBrowse link
G SAMD4A sterile alpha motif domain containing 4A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:183,915,337...184,140,122
Ensembl chr 1:183,915,339...184,140,122
JBrowse link
G SAMD4B sterile alpha motif domain containing 4B involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:48,002,726...48,046,563
Ensembl chr 6:48,002,712...48,046,561
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3589099|PMID:15814898) Ensembl
MGI
PMID:15814898 GO_REF:0000107 MGI:3589099 NCBI chr 6:48,063,732...48,066,235
Ensembl chr 6:48,052,137...48,066,257
JBrowse link
polyuridylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DIS3L2 DIS3 like 3'-5' exoribonuclease 2 involved_in IEA UniProt GO_REF:0000104 NCBI chr15:132,540,784...132,902,943
Ensembl chr15:132,540,558...132,959,793
JBrowse link
G TUT4 terminal uridylyl transferase 4 involved_in ISO (MGI:6162305|PMID:28792939) UniProt PMID:28792939 MGI:6162305 NCBI chr 6:159,655,658...159,794,450
Ensembl chr 6:159,655,627...159,793,758
JBrowse link
G TUT7 terminal uridylyl transferase 7 involved_in ISO (MGI:6162305|PMID:28792939) UniProt PMID:28792939 MGI:6162305 NCBI chr10:28,995,564...29,061,179
Ensembl chr10:28,995,565...29,061,176
JBrowse link
positive regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAX BCL2 associated X, apoptosis regulator involved_in ISO (PMID:11350920) BHF-UCL PMID:11350920 NCBI chr 6:54,222,341...54,228,150
Ensembl chr 6:54,187,260...54,228,144
JBrowse link
G ENDOG endonuclease G ISO RGD PMID:16407272 RGD:9685355 NCBI chr 1:269,153,955...269,157,789
Ensembl chr 1:269,154,090...269,157,788
JBrowse link
G HSF1 heat shock transcription factor 1 ISO RGD PMID:21192280 RGD:10403035 NCBI chr 4:463,531...486,483
Ensembl chr 4:461,559...486,473
JBrowse link
G IGFBP3 insulin like growth factor binding protein 3 ISO RGD PMID:15125883 RGD:10402776 NCBI chr18:50,002,921...50,009,425 JBrowse link
G IL6 interleukin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:91,506,421...91,510,830
Ensembl chr 9:91,506,340...91,511,263
JBrowse link
positive regulation of ATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2L1 BCL2 like 1 involved_in ISO PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr17:35,366,139...35,415,798
Ensembl chr17:35,366,141...35,415,359
JBrowse link
G ENO1 enolase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:69,385,879...69,401,664
Ensembl chr 6:69,385,882...69,401,117
JBrowse link
G IL4 interleukin 4 involved_in ISO (MGI:6304699|PMID:29061364) ARUK-UCL PMID:29061364 MGI:6304699 NCBI chr 2:134,986,817...134,994,365
Ensembl chr 2:134,986,817...134,994,365
JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 involved_in ISO PMID:15459207 CAFA PMID:15459207 RGD:12793039 NCBI chr 1:164,381,892...164,469,313
Ensembl chr 1:164,381,845...164,471,226
JBrowse link
G MT-CO2 mitochondrially encoded cytochrome c oxidase II ISO RGD PMID:19306371 RGD:13506652 NCBI chr MT:8,203...8,890
Ensembl chr MT:8,203...8,890
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor ISO RGD PMID:22629444 RGD:7240532 NCBI chr 4:12,455,141...12,460,360
Ensembl chr 4:12,455,119...12,461,078
JBrowse link
G NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 ISO RGD PMID:26888427 RGD:11040458 NCBI chr 9:12,486,488...12,492,507
Ensembl chr 9:12,485,167...12,492,504
JBrowse link
G PID1 phosphotyrosine interaction domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:130,080,821...130,215,548
Ensembl chr15:130,075,040...130,332,689
JBrowse link
G PPARA peroxisome proliferator activated receptor alpha acts_upstream_of
involved_in
ISO
IEA
(PMID:31574452) ARUK-UCL
Ensembl
PMID:31574452 GO_REF:0000107 NCBI chr 5:3,302,755...3,321,091
Ensembl chr 5:3,300,708...3,366,361
JBrowse link
G PPARGC1A PPARG coactivator 1 alpha involved_in ISS UniProt GO_REF:0000024 NCBI chr 8:17,841,844...18,527,953
Ensembl chr 8:17,841,844...17,961,909
JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase ISO RGD PMID:24096089 RGD:10413842 NCBI chr 1:5,698,508...6,731,132
Ensembl chr 1:5,465,511...6,730,881
JBrowse link
G SIRT1 sirtuin 1 involved_in IMP (PMID:24747689) AgBase PMID:24747689 NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,157...71,123,299
JBrowse link
G SLC25A12 solute carrier family 25 member 12 ISO RGD PMID:19764902 RGD:13628741 NCBI chr15:77,895,935...78,021,930
Ensembl chr15:77,895,935...78,098,383
JBrowse link
G STAT3 signal transducer and activator of transcription 3 ISO RGD PMID:23590160 RGD:8694322 NCBI chr12:20,407,316...20,471,091
Ensembl chr12:20,407,233...20,472,993
JBrowse link
G TAFAZZIN tafazzin, phospholipid-lysophospholipid transacylase ISO RGD PMID:20348225 RGD:13432160 NCBI chr  X:124,940,036...124,946,275
Ensembl chr  X:124,940,031...124,947,241
JBrowse link
G TMSB4X thymosin beta 4 X-linked involved_in ISO (PMID:21106936) CAFA PMID:21106936 NCBI chr  X:9,649,516...9,651,662
Ensembl chr  X:9,650,179...9,651,661
JBrowse link
G TREM2 triggering receptor expressed on myeloid cells 2 involved_in ISO (MGI:5906931|PMID:28802038) ARUK-UCL PMID:28802038 MGI:5906931 NCBI chr 7:36,465,921...36,471,509
Ensembl chr 7:36,464,034...36,471,516
JBrowse link
G VCP valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:235,854,532...235,869,712
Ensembl chr 1:235,796,446...235,876,321
JBrowse link
positive regulation of base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAM168A family with sequence similarity 168 member A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:7,852,347...8,072,011
Ensembl chr 9:7,852,352...8,071,733
JBrowse link
G RELT RELT TNF receptor involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:7,833,387...7,852,469
Ensembl chr 9:7,833,406...7,854,496
JBrowse link
G RPS3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:9,612,939...9,630,404
Ensembl chr 9:9,616,456...9,630,413
JBrowse link
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZFP36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:48,063,732...48,066,235
Ensembl chr 6:48,052,137...48,066,257
JBrowse link
positive regulation of deoxyribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCNA proliferating cell nuclear antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,137,746...14,142,584
Ensembl chr17:14,125,814...14,185,276
JBrowse link
positive regulation of DNA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARRB2 arrestin beta 2 ISO RGD PMID:19254952 RGD:5509898 NCBI chr12:52,161,776...52,170,362
Ensembl chr12:52,161,776...52,170,344
JBrowse link
G C3AR1 complement C3a receptor 1 ISO RGD PMID:23713944 RGD:7411623 NCBI chr 5:63,088,778...63,098,750 JBrowse link
G CAMK2D calcium/calmodulin dependent protein kinase II delta ISO RGD PMID:17267544 RGD:2303063 NCBI chr 8:108,916,019...109,221,317
Ensembl chr 8:108,710,660...109,228,901
JBrowse link
G CRHR2 corticotropin releasing hormone receptor 2 ISO RGD PMID:16005543 RGD:5131269 NCBI chr18:42,251,755...42,296,457
Ensembl chr18:42,251,749...42,295,468
JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 ISO RGD PMID:20439821 RGD:7829726 NCBI chr 3:102,195,743...102,205,687
Ensembl chr 3:102,195,741...102,206,750
JBrowse link
G DDX39B DExD-box helicase 39B ISO RGD PMID:22446327 RGD:10401140 NCBI chr 7:23,658,089...23,669,095
Ensembl chr 7:23,658,086...23,673,083
JBrowse link
G EGF epidermal growth factor ISO RGD PMID:3093142 RGD:10395243 NCBI chr 8:112,235,607...112,330,062
Ensembl chr 8:112,234,365...112,330,046
JBrowse link
G FGF2 fibroblast growth factor 2 involved_in ISO (PMID:16774925) UniProt PMID:16774925 NCBI chr 8:101,278,877...101,344,084
Ensembl chr 8:101,278,878...101,343,916
JBrowse link
G FGFR4 fibroblast growth factor receptor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:80,841,536...80,853,791
Ensembl chr 2:80,841,536...80,853,796
JBrowse link
G GFER growth factor, augmenter of liver regeneration ISO RGD PMID:16937468 RGD:9685728 NCBI chr 3:39,981,938...39,984,451
Ensembl chr 3:39,981,940...39,985,082
JBrowse link
G GSK3B glycogen synthase kinase 3 beta ISO RGD PMID:12721208 RGD:10045365 NCBI chr13:140,136,109...140,370,197
Ensembl chr13:140,136,158...140,369,574
JBrowse link
G HGF hepatocyte growth factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:98,437,771...98,513,573
Ensembl chr 9:98,437,087...98,513,156
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor involved_in ISS UniProt GO_REF:0000024 NCBI chr 4:12,455,141...12,460,360
Ensembl chr 4:12,455,119...12,461,078
JBrowse link
G NOX4 NADPH oxidase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:22,622,105...22,776,691
Ensembl chr 9:22,624,195...22,776,554
JBrowse link
G PAK3 p21 (RAC1) activated kinase 3 ISO RGD PMID:12890786 RGD:7775030 NCBI chr  X:90,941,976...91,244,331
Ensembl chr  X:90,942,232...91,239,440
JBrowse link
G PDGFB platelet derived growth factor subunit B involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 5:8,986,461...9,007,446 JBrowse link
G PDGFRB platelet derived growth factor receptor beta involved_in ISO (MGI:5284758|PMID:19019919) UniProt PMID:19019919 MGI:5284758 NCBI chr 2:151,155,753...151,192,818
Ensembl chr 2:151,155,754...151,192,647
JBrowse link
G PRKD2 protein kinase D2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:52,559,066...52,599,174
Ensembl chr 6:52,559,393...52,599,132
JBrowse link
G PTK2B protein tyrosine kinase 2 beta ISO RGD PMID:21451101 RGD:10041071 NCBI chr14:11,063,662...11,194,196
Ensembl chr14:11,064,492...11,194,194
JBrowse link
G RGCC regulator of cell cycle involved_in ISO PMID:9756947 BHF-UCL PMID:9756947 RGD:633887 NCBI chr11:25,481,845...25,496,548
Ensembl chr11:25,478,877...25,496,519
JBrowse link
G SMOC2 SPARC related modular calcium binding 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:1,193,163...1,332,739
Ensembl chr 1:1,193,163...1,333,092
JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase involved_in ISO PMID:16530387 UniProt PMID:16530387 RGD:8553998 NCBI chr17:40,470,970...40,524,862
Ensembl chr17:40,471,009...40,524,860
JBrowse link
G TNF tumor necrosis factor ISO RGD PMID:9395232 RGD:14696805 NCBI chr 7:23,699,635...23,702,393
Ensembl chr 7:23,699,636...23,703,655
JBrowse link
G VEGFA vascular endothelial growth factor A involved_in ISO (PMID:16774925) UniProt PMID:16774925 NCBI chr 7:38,746,393...38,762,282
Ensembl chr 7:38,746,052...38,761,038
JBrowse link
positive regulation of DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATM ATM serine/threonine kinase ISO RGD PMID:27895165 RGD:12879393 NCBI chr 9:36,620,656...36,759,555
Ensembl chr 9:36,620,658...36,759,554
JBrowse link
positive regulation of DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CALM2 calmodulin 2 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr 3:93,371,765...93,386,378
Ensembl chr 3:93,372,045...93,438,068
JBrowse link
G OTUD4 OTU deubiquitinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:83,240,759...83,288,237
Ensembl chr 8:83,240,737...83,288,234
JBrowse link
G STPG4 sperm-tail PG-rich repeat containing 4 involved_in IBA
IEA
(PMID:21873635) GO_Central
InterPro
Ensembl
PMID:21873635 GO_REF:0000002 GO_REF:0000107 NCBI chr 3:93,386,523...93,438,070
Ensembl chr 3:93,372,045...93,438,068
JBrowse link
G TOX thymocyte selection associated high mobility group box involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:73,810,180...74,115,352
Ensembl chr 4:73,810,188...74,134,229
JBrowse link
G USP7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:33,754,357...33,810,480
Ensembl chr 3:33,775,829...33,810,466
JBrowse link
G USP9X ubiquitin specific peptidase 9 X-linked involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:36,736,049...36,888,702
Ensembl chr  X:36,760,819...36,885,275
JBrowse link
positive regulation of DNA ligase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB1 high mobility group box 1 involved_in IDA (PMID:9600082) CACAO PMID:9600082 NCBI chr11:7,195,556...7,321,071 JBrowse link
G XRCC1 X-ray repair cross complementing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:50,403,691...50,425,730
Ensembl chr 6:50,403,686...50,425,710
JBrowse link
positive regulation of DNA ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APLF aprataxin and PNKP like factor acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21211721) MGI
Ensembl
PMID:21211721 GO_REF:0000107 NCBI chr 3:73,752,115...73,831,158
Ensembl chr 3:73,752,106...73,831,075
JBrowse link
G HMGB1 high mobility group box 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr11:7,195,556...7,321,071 JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21211721) MGI
Ensembl
PMID:21211721 GO_REF:0000107 NCBI chr13:34,075,807...34,084,384
Ensembl chr13:34,075,801...34,085,210
JBrowse link
G RAD51 RAD51 recombinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:130,592,414...130,640,326
Ensembl chr 1:130,586,647...130,640,136
JBrowse link
positive regulation of DNA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA3 annexin A3 ISO RGD PMID:15744063 RGD:2316072 NCBI chr 8:73,970,314...73,993,039 JBrowse link
G HMGB2 high mobility group box 2 ISO RGD PMID:8432381 RGD:2316096 NCBI chr14:16,709,966...16,712,288
Ensembl chr14:16,710,047...16,717,126
JBrowse link
G IGF1R insulin like growth factor 1 receptor ISO RGD PMID:19507001 RGD:2311507 NCBI chr 1:137,383,623...137,691,038
Ensembl chr 1:137,387,925...137,690,666
JBrowse link
G NPM1 nucleophosmin 1 ISO RGD PMID:11481036 RGD:1600909 NCBI chr16:52,767,263...52,781,862
Ensembl chr16:52,765,296...52,781,740
JBrowse link
G NPM2 nucleophosmin/nucleoplasmin 2 ISO lesser effect than Npm1 RGD PMID:11481036 RGD:1600909 NCBI chr14:6,288,422...6,303,750
Ensembl chr14:6,289,337...6,303,748
JBrowse link
G OGA O-GlcNAcase ISO RGD PMID:19139380 RGD:2305938 NCBI chr14:112,822,494...112,851,215
Ensembl chr14:112,822,498...112,851,204
JBrowse link
G PFN1 profilin 1 ISO RGD PMID:10966486 RGD:2324858 NCBI chr12:51,962,642...51,965,570
Ensembl chr12:51,961,696...51,973,660
JBrowse link
positive regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT3L DNA methyltransferase 3 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:207,119,025...207,141,990 JBrowse link
G MECP2 methyl-CpG binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:124,735,523...124,789,063
Ensembl chr  X:124,735,656...124,789,110
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor involved_in ISO (PMID:19786833) BHF-UCL PMID:19786833 NCBI chr 4:12,455,141...12,460,360
Ensembl chr 4:12,455,119...12,461,078
JBrowse link
G WT1 WT1 transcription factor acts_upstream_of ISO (PMID:23042785) ARUK-UCL PMID:23042785 NCBI chr 2:28,411,467...28,456,007
Ensembl chr 2:28,411,794...28,456,003
JBrowse link
positive regulation of DNA primase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRIM2 DNA primase subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:28,274,626...28,566,633
Ensembl chr 7:28,274,626...28,631,514
JBrowse link
positive regulation of DNA recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZCWPW1 zinc finger CW-type and PWWP domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:8,318,683...8,356,195
Ensembl chr 3:8,323,191...8,358,487
JBrowse link
positive regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:135,002,297...135,021,205
Ensembl chr 8:135,002,320...135,021,197
JBrowse link
G APBB1 amyloid beta precursor protein binding family B member 1 involved_in ISO PMID:19282473
(MGI:3698695|PMID:17121854)
UniProt PMID:17121854 PMID:19282473 MGI:3698695 RGD:8553580 NCBI chr 9:3,303,032...3,323,828
Ensembl chr 9:3,303,019...3,323,828
JBrowse link
G BABAM1 BRISC and BRCA1 A complex member 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:60,398,170...60,407,742
Ensembl chr 2:60,398,191...60,407,557
JBrowse link
G BABAM2 BRISC and BRCA1 A complex member 2 involved_in IEA UniProt GO_REF:0000104 NCBI chr 3:110,897,250...111,328,414
Ensembl chr 3:110,897,351...111,328,405
JBrowse link
G BRCA1 BRCA1 DNA repair associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:19,788,087...19,854,515
Ensembl chr12:19,786,020...19,855,570
JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 involved_in IEA UniProt GO_REF:0000104 NCBI chr  X:125,383,392...125,439,082
Ensembl chr  X:125,383,414...125,439,082
JBrowse link
G CBX8 chromobox 8 ISO RGD PMID:23572236 RGD:9586727 NCBI chr12:2,562,419...2,565,035
Ensembl chr12:2,562,393...2,566,145
JBrowse link
G CEBPG CCAAT enhancer binding protein gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:43,164,902...43,175,002
Ensembl chr 6:43,164,918...43,175,002
JBrowse link
G CMTR1 cap methyltransferase 1 involved_in IEA UniProt GO_REF:0000104 NCBI chr 7:33,000,499...33,063,739
Ensembl chr 7:32,931,786...33,063,739
JBrowse link
G DHX9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:124,141,929...124,183,838
Ensembl chr 9:124,093,667...124,185,352
JBrowse link
G EGFR epidermal growth factor receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:139,302,410...139,474,632
Ensembl chr 9:139,300,022...139,478,882
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor involved_in ISO (PMID:22483866) UniProt PMID:22483866 NCBI chr14:89,998,125...90,075,911
Ensembl chr14:90,002,024...90,075,898
JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:39,704,602...39,770,330
Ensembl chr16:39,701,701...39,770,315
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:63,970,939...64,328,107
Ensembl chr 4:63,970,511...64,328,105
JBrowse link
G EYA2 EYA transcriptional coactivator and phosphatase 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:48,930,682...49,243,789
Ensembl chr17:48,966,814...49,243,747
JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:85,095,409...85,185,856
Ensembl chr 6:85,095,409...85,185,799
JBrowse link
G EYA4 EYA transcriptional coactivator and phosphatase 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:30,260,784...30,575,593
Ensembl chr 1:30,261,909...30,575,559
JBrowse link
G FGF10 fibroblast growth factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,469...28,777,541
JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase ISO RGD PMID:1945835 RGD:729332 NCBI chr14:138,502,005...138,771,543
Ensembl chr14:138,499,161...138,779,938
JBrowse link
G NPAS2 neuronal PAS domain protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:53,298,805...53,490,375
Ensembl chr 3:53,298,863...53,438,910
JBrowse link
G PARG poly(ADP-ribose) glycohydrolase ISO RGD PMID:15158362 RGD:2316739 NCBI chr14:90,338,599...90,481,015
Ensembl chr14:90,338,503...90,480,986
JBrowse link
G PCNA proliferating cell nuclear antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,137,746...14,142,584
Ensembl chr17:14,125,814...14,185,276
JBrowse link
G RNF168 ring finger protein 168 involved_in IEA UniProt GO_REF:0000104 NCBI chr13:133,625,534...133,659,253 JBrowse link
G RNF8 ring finger protein 8 involved_in IEA UniProt GO_REF:0000104 NCBI chr 7:32,931,786...32,969,536
Ensembl chr 7:32,931,786...33,063,739
JBrowse link
G RPS3 ribosomal protein S3 involved_in ISO (PMID:23911537) UniProt PMID:23911537 NCBI chr 9:9,612,939...9,630,404
Ensembl chr 9:9,616,456...9,630,413
JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,157...71,123,299
JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in ISO (PMID:24790221) UniProt PMID:24790221 NCBI chr 6:103,809,732...103,986,057
Ensembl chr 6:103,808,066...103,986,144
JBrowse link
G TIGAR TP53 induced glycolysis regulatory phosphatase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:66,044,679...66,067,571
Ensembl chr 5:66,044,686...66,067,377
JBrowse link
G TMEM161A transmembrane protein 161A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:58,728,738...58,744,939
Ensembl chr 2:58,728,813...58,744,937
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:63,094,382...63,101,532
Ensembl chr 6:63,094,648...63,101,532
JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N involved_in ISO (PMID:16129784) HGNC-UCL PMID:16129784 NCBI chr 5:89,673,306...89,716,345
Ensembl chr 5:89,673,573...89,714,281
JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chr 4:79,621,343...79,652,502
Ensembl chr 4:79,419,358...79,652,471
JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 involved_in ISS
IBA
IEA
(PMID:21873635) UniProt
GO_Central
Ensembl
PMID:21873635 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:80,895,631...81,040,712
Ensembl chr 2:80,919,244...81,035,711
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in ISO (PMID:25512560) UniProt PMID:25512560 NCBI chr12:52,954,674...52,968,371
Ensembl chr12:52,954,669...52,974,741
JBrowse link
positive regulation of DNA strand elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POT1 protection of telomeres 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:22,885,704...22,981,893
Ensembl chr18:22,827,029...22,981,890
JBrowse link
positive regulation of DNA-dependent DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK2 cyclin dependent kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4439421|PMID:20215406) Ensembl
MGI
PMID:20215406 GO_REF:0000107 MGI:4439421 NCBI chr 5:21,365,723...21,372,170
Ensembl chr 5:21,365,763...21,392,726
JBrowse link
G CIZ1 CDKN1A interacting zinc finger protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3513706|PMID:15585571)
(MGI:4439421|PMID:20215406)
Ensembl
MGI
PMID:15585571 PMID:20215406 GO_REF:0000107 MGI:3513706 MGI:4439421 NCBI chr 1:268,618,972...268,642,064
Ensembl chr 1:268,617,087...268,642,058
JBrowse link
positive regulation of DNA-directed DNA polymerase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHTF18 chromosome transmission fidelity factor 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:41,000,688...41,009,588
Ensembl chr 3:40,996,991...41,009,562
JBrowse link
G DSCC1 DNA replication and sister chromatid cohesion 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:19,161,063...19,180,002
Ensembl chr 4:19,161,006...19,267,412
JBrowse link
G NPM1 nucleophosmin 1 ISO RGD PMID:8123045 RGD:11535022 NCBI chr16:52,767,263...52,781,862
Ensembl chr16:52,765,296...52,781,740
JBrowse link
G PCNA proliferating cell nuclear antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,137,746...14,142,584
Ensembl chr17:14,125,814...14,185,276
JBrowse link
G POLG2 DNA polymerase gamma 2, accessory subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:14,582,075...14,601,576
Ensembl chr12:14,582,544...14,601,576
JBrowse link
G RFC2 replication factor C subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:11,373,489...11,392,690
Ensembl chr 3:11,373,489...11,392,695
JBrowse link
G RFC3 replication factor C subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:10,145,927...10,524,472
Ensembl chr11:10,145,974...10,527,268
JBrowse link
G RFC4 replication factor C subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:124,589,292...124,604,421
Ensembl chr13:124,589,295...124,604,426
JBrowse link
G RFC5 replication factor C subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:34,630,374...34,642,598
Ensembl chr14:34,613,943...34,642,588
JBrowse link
positive regulation of DNA-templated transcription, elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALYREF Aly/REF export factor involved_in ISO (PMID:22144908) UniProt PMID:22144908 NCBI chr12:1,099,239...1,103,058
Ensembl chr12:1,091,976...1,103,054
JBrowse link
G CCNK cyclin K involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:120,487,140...120,514,223
Ensembl chr 7:120,487,206...120,514,014
JBrowse link
G CCNT1 cyclin T1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:14,768,423...14,808,424
Ensembl chr 5:14,768,429...14,816,613
JBrowse link
G CCNT2 cyclin T2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:16,974,364...17,021,293
Ensembl chr15:16,974,771...17,021,294
JBrowse link
G DDX39B DExD-box helicase 39B involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 7:23,658,089...23,669,095
Ensembl chr 7:23,658,086...23,673,083
JBrowse link
G ELL3 elongation factor for RNA polymerase II 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:127,781,357...127,784,803
Ensembl chr 1:127,781,403...127,784,844
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:89,998,125...90,075,911
Ensembl chr14:90,002,024...90,075,898
JBrowse link
G KAT7 lysine acetyltransferase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:25,970,966...26,005,006
Ensembl chr12:25,970,941...26,008,302
JBrowse link
G SCAF8 SR-related CTD associated factor 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:11,888,108...12,122,435
Ensembl chr 1:11,767,640...12,122,348
JBrowse link
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:34,622,775...34,629,681
Ensembl chr12:34,619,729...34,629,022
JBrowse link
G SUPT5H SPT5 homolog, DSIF elongation factor subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:48,095,001...48,125,120
Ensembl chr 6:48,089,773...48,172,972
JBrowse link
G THOC1 THO complex 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:106,039,262...106,088,125
Ensembl chr 6:106,040,042...106,088,026
JBrowse link
G THOC5 THO complex 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:46,578,973...46,624,237
Ensembl chr14:46,579,838...46,653,656
JBrowse link
positive regulation of DNA-templated transcription, initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCLAF1 BCL2 associated transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:27,872,167...27,902,980
Ensembl chr 1:27,872,184...27,919,899
JBrowse link
G CEBPA CCAAT enhancer binding protein alpha involved_in ISO (PMID:28186500) UniProt PMID:28186500 NCBI chr 6:43,083,200...43,085,884
Ensembl chr 6:43,083,203...43,085,836
JBrowse link
G FOSL1 FOS like 1, AP-1 transcription factor subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:6,430,158...6,436,173
Ensembl chr 2:6,430,153...6,436,173
JBrowse link
G JUN Jun proto-oncogene, AP-1 transcription factor subunit involved_in ISO (PMID:23027619) CACAO PMID:23027619 NCBI chr 6:153,686,425...153,687,635 JBrowse link
G MITF melanocyte inducing transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:51,177,356...51,422,096
Ensembl chr13:51,178,203...51,422,096
JBrowse link
G SETX senataxin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:272,093,449...272,170,857
Ensembl chr 1:272,095,358...272,170,750
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17332325) CACAO PMID:17332325 NCBI chr 9:88,286,911...88,290,131 JBrowse link
positive regulation of DNA-templated transcription, termination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SETX senataxin involved_in ISO (PMID:19515850) UniProt PMID:19515850 NCBI chr 1:272,093,449...272,170,857
Ensembl chr 1:272,095,358...272,170,750
JBrowse link
positive regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX11 DEAD/H-box helicase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:67,359,399...67,395,739
Ensembl chr 5:67,321,132...67,397,111
JBrowse link
G FMN2 formin 2 involved_in ISO (PMID:26287480) UniProt PMID:26287480
G FOXM1 forkhead box M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:67,246,219...67,263,215
Ensembl chr 5:67,245,694...67,263,211
Ensembl chr 5:67,245,694...67,263,211
JBrowse link
G KHDC3L KH domain containing 3 like, subcortical maternal complex member involved_in ISO (MGI:6467697|PMID:29125140), (MGI:6716977|PMID:33115731) UniProt PMID:29125140 PMID:33115731 MGI:6467697 MGI:6716977 NCBI chr 1:52,996,706...52,999,074 JBrowse link
G LOC110256637 SMC5-SMC6 complex localization factor protein 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:111,996,781...112,049,309
Ensembl chr14:111,996,760...112,068,251
JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:138,502,005...138,771,543
Ensembl chr14:138,499,161...138,779,938
JBrowse link
G OOEP oocyte expressed protein involved_in ISO (MGI:6467697|PMID:29125140) UniProt PMID:29125140 MGI:6467697 NCBI chr 1:53,006,898...53,007,877
Ensembl chr 1:53,006,685...53,007,885
JBrowse link
G SLF1 SMC5-SMC6 complex localization factor 1 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr 2:101,286,744...101,375,612
Ensembl chr 2:101,313,091...101,375,607
JBrowse link
G SPIDR scaffold protein involved in DNA repair involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:79,874,937...80,190,744
Ensembl chr 4:79,874,828...80,190,655
JBrowse link
G SPIRE1 spire type actin nucleation factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:96,934,023...97,114,591
Ensembl chr 6:96,934,265...97,114,588
JBrowse link
G SPIRE2 spire type actin nucleation factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:211,480...246,109
Ensembl chr 6:211,487...243,636
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in ISO (PMID:27715493) UniProt PMID:27715493 NCBI chr12:52,954,674...52,968,371
Ensembl chr12:52,954,669...52,974,741
JBrowse link
G ZCWPW1 zinc finger CW-type and PWWP domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:8,318,683...8,356,195
Ensembl chr 3:8,323,191...8,358,487
JBrowse link
positive regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR2 actin related protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:76,691,275...76,729,269
Ensembl chr 3:76,691,275...76,729,210
JBrowse link
G ARID2 AT-rich interaction domain 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:76,637,385...76,800,155
Ensembl chr 5:76,637,202...76,847,316
JBrowse link
G BLM BLM RecQ like helicase acts_upstream_of_or_within ISO (MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:5648586 NCBI chr 7:53,317,515...53,412,649
Ensembl chr 7:53,317,540...53,412,647
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:89,998,125...90,075,911
Ensembl chr14:90,002,024...90,075,898
JBrowse link
G FANCB FA complementation group B involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:5648586|PMID:25520194)
GO_Central
MGI
PMID:21873635 PMID:25520194 MGI:5648586 NCBI chr  X:11,386,360...11,408,958
Ensembl chr  X:10,960,996...11,409,057
JBrowse link
G FUS FUS RNA binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:17,314,936...17,326,663
Ensembl chr 3:17,314,332...17,326,637
JBrowse link
G KHDC3L KH domain containing 3 like, subcortical maternal complex member involved_in ISO (PMID:31609975)
(MGI:6716962|PMID:25936915)
UniProt PMID:25936915 PMID:31609975 MGI:6716962 NCBI chr 1:52,996,706...52,999,074 JBrowse link
G MMS19 MMS19 homolog, cytosolic iron-sulfur assembly component involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:108,853,038...108,886,587
Ensembl chr14:108,853,022...108,886,558
JBrowse link
G MRNIP MRN complex interacting protein involved_in ISO (PMID:27568553) UniProt PMID:27568553 NCBI chr 2:78,730,611...78,753,152 JBrowse link
G OOEP oocyte expressed protein involved_in ISO (MGI:6272426|PMID:29955025) UniProt PMID:29955025 MGI:6272426 NCBI chr 1:53,006,898...53,007,877
Ensembl chr 1:53,006,685...53,007,885
JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:14,203,157...14,241,164
Ensembl chr10:14,203,159...14,241,197
JBrowse link
G RAD51AP1 RAD51 associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:65,872,277...65,897,210
Ensembl chr 5:65,872,281...65,897,215
JBrowse link
G WAS WASP actin nucleation promoting factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:42,774,597...42,793,055
Ensembl chr  X:42,774,588...42,793,055
JBrowse link
G WDR48 WD repeat domain 48 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:23,735,566...23,786,312
Ensembl chr13:23,735,584...23,786,309
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:52,954,674...52,968,371
Ensembl chr12:52,954,669...52,974,741
JBrowse link
positive regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DTX3L deltex E3 ubiquitin ligase 3L involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:137,950,266...137,961,381
Ensembl chr13:137,950,272...137,961,343
JBrowse link
G FH fumarate hydratase involved_in ISS UniProt GO_REF:0000024 NCBI chr10:12,404,143...12,431,843
Ensembl chr10:12,404,176...12,431,801
JBrowse link
G KMT5B lysine methyltransferase 5B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:4,710,510...4,768,237
Ensembl chr 2:4,710,769...4,766,005
JBrowse link
G KMT5C lysine methyltransferase 5C involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:59,517,058...59,524,551
Ensembl chr 6:59,517,058...59,525,434
JBrowse link
G LOC100514009 histone-lysine N-methyltransferase SETMAR involved_in ISO (PMID:20620605), (PMID:21491884) UniProt PMID:20620605 PMID:21491884 NCBI chr13:60,914,412...60,933,064 JBrowse link
G LOC100627380 lysine-specific demethylase 4D-like acts_upstream_of_or_within ISO (PMID:24550317) MGI PMID:24550317 NCBI chr 9:27,083,348...27,085,693 JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:71,773,680...71,779,192
Ensembl chr 6:71,773,681...71,779,183
JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:34,075,807...34,084,384
Ensembl chr13:34,075,801...34,085,210
JBrowse link
G PARP9 poly(ADP-ribose) polymerase family member 9 involved_in ISO (PMID:28525742) UniProt PMID:28525742 NCBI chr13:137,960,987...138,000,862
Ensembl chr13:137,961,357...138,002,024
JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:54,870,359...54,880,814
Ensembl chr 6:54,870,361...54,880,807
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:79,687,375...79,850,146
Ensembl chr 4:79,687,359...79,847,281
JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:769,518...832,036
Ensembl chr15:774,189...832,010
JBrowse link
G SHLD1 shieldin complex subunit 1 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr17:14,610,723...14,706,082
Ensembl chr17:14,601,193...14,707,906
JBrowse link
G SHLD2 shieldin complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:88,005,599...88,121,155
Ensembl chr14:88,005,590...88,121,383
JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:103,809,732...103,986,057
Ensembl chr 6:103,808,066...103,986,144
JBrowse link
G TOP2B DNA topoisomerase II beta ISO RGD PMID:22019940 RGD:13432143 NCBI chr13:12,507,738...12,575,042
Ensembl chr13:12,507,138...12,575,583
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:52,954,674...52,968,371
Ensembl chr12:52,954,669...52,974,741
JBrowse link
positive regulation of endodeoxyribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 involved_in ISO (PMID:20605787) UniProt PMID:20605787
G DDX11 DEAD/H-box helicase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:67,359,399...67,395,739
Ensembl chr 5:67,321,132...67,397,111
JBrowse link
G PRKCD protein kinase C delta involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:35,290,835...35,323,245
Ensembl chr13:35,290,264...35,323,356
JBrowse link
G RPS3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:9,612,939...9,630,404
Ensembl chr 9:9,616,456...9,630,413
JBrowse link
positive regulation of exoribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TCEA1 transcription elongation factor A1 ISO RGD PMID:16046193 RGD:9693728 NCBI chr 4:77,109,555...77,138,324
Ensembl chr 4:77,109,507...77,138,362
JBrowse link
positive regulation of glycolytic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APP amyloid beta precursor protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:189,434,854...189,716,120
Ensembl chr13:189,434,869...189,716,057
JBrowse link
G ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) involved_in ISO (MGI:4881347|PMID:21074248) UniProt PMID:21074248 MGI:4881347 NCBI chr 7:97,270,698...97,316,578
Ensembl chr 7:97,262,305...97,316,571
JBrowse link
G ESRRB estrogen related receptor beta involved_in ISO PMID:24481529 BHF-UCL PMID:24481529 RGD:12910990 NCBI chr 7:99,511,135...99,699,478
Ensembl chr 7:99,514,168...99,699,011
JBrowse link
G GCK glucokinase ISO RGD PMID:17553851 RGD:2301905 NCBI chr18:50,979,167...51,024,500
Ensembl chr18:50,790,472...51,028,917
JBrowse link
G GPD1 glycerol-3-phosphate dehydrogenase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1927687|PMID:11147825) Ensembl
MGI
PMID:11147825 GO_REF:0000107 MGI:1927687 NCBI chr 5:16,008,179...16,021,676
Ensembl chr 5:16,007,448...16,017,825
JBrowse link
G HTR2A 5-hydroxytryptamine receptor 2A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3766710|PMID:17408640) Ensembl
MGI
PMID:17408640 GO_REF:0000107 MGI:3766710 NCBI chr11:20,555,939...20,620,225
Ensembl chr11:20,555,961...20,619,629
JBrowse link
G IFNG interferon gamma involved_in ISO (MGI:6304699|PMID:29061364) ARUK-UCL PMID:29061364 MGI:6304699 NCBI chr 5:32,477,906...32,482,670
Ensembl chr 5:32,477,848...32,482,752
JBrowse link
G IGF1 insulin like growth factor 1 involved_in ISO (PMID:7688386) BHF-UCL PMID:7688386 NCBI chr 5:81,762,027...81,909,253
Ensembl chr 5:81,775,970...81,848,037
JBrowse link
G INS insulin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:1,496,842...1,498,052
Ensembl chr 2:1,496,842...1,497,841
JBrowse link
G INSR insulin receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:71,797,209...71,939,923
Ensembl chr 2:71,797,204...71,936,139
JBrowse link
G MIF macrophage migration inhibitory factor ISO RGD PMID:11086030 RGD:1642010 NCBI chr14:49,840,303...49,841,063
Ensembl chr14:49,840,305...49,862,317
JBrowse link
G MLXIPL MLX interacting protein like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:10,898,675...10,934,257
Ensembl chr 3:10,894,270...10,934,047
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor ISO RGD PMID:22842522 RGD:7207891 NCBI chr 4:12,455,141...12,460,360
Ensembl chr 4:12,455,119...12,461,078
JBrowse link
G P2RX7 purinergic receptor P2X 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:31,415,188...31,476,502
Ensembl chr14:31,415,192...31,476,472
JBrowse link
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr16:25,745,902...25,783,524
Ensembl chr16:25,745,321...25,783,610
JBrowse link
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in ISO PMID:11069105 UniProt PMID:11069105 RGD:8554193 NCBI chr 6:155,683,392...155,754,283
Ensembl chr 6:155,681,781...155,754,272
JBrowse link
G PRXL2C peroxiredoxin like 2C involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:25,428,129...25,444,609
Ensembl chr10:25,428,164...25,446,185
JBrowse link
G PSEN1 presenilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:96,478,179...96,567,884
Ensembl chr 7:96,478,181...96,569,132
JBrowse link
G SLC4A4 solute carrier family 4 member 4 acts_upstream_of
involved_in
ISO
IEA
(PMID:21976511)
(MGI:5295108|PMID:21976511)
ARUK-UCL
Ensembl
PMID:21976511 GO_REF:0000107 MGI:5295108 NCBI chr 8:67,768,955...68,177,213
Ensembl chr 8:67,706,880...68,290,496
JBrowse link
G ZBTB20 zinc finger and BTB domain containing 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:144,855,821...145,668,320
Ensembl chr13:144,855,976...145,754,184
JBrowse link
positive regulation of guanylate cyclase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADORA2B adenosine A2b receptor acts_upstream_of_or_within ISO (MGI:3794903|PMID:18340377) MGI PMID:18340377 MGI:3794903 NCBI chr12:59,431,834...59,449,701
Ensembl chr12:59,393,220...59,449,692
JBrowse link
G GUCA1A guanylate cyclase activator 1A involved_in IEA
ISO
GOC
RGD
PMID:12545196 GO_REF:0000108 RGD:1599357 NCBI chr 7:37,282,630...37,296,713
Ensembl chr 7:37,282,700...37,296,717
JBrowse link
G GUCA2A guanylate cyclase activator 2A involved_in IEA GOC GO_REF:0000108 NCBI chr 6:169,146,336...169,148,284 JBrowse link
G GUCA2B guanylate cyclase activator 2B involved_in IEA GOC GO_REF:0000108 NCBI chr 6:169,152,172...169,154,557
Ensembl chr 6:169,152,179...169,154,551
JBrowse link
G NOS1 nitric oxide synthase 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:35,112,898...35,299,297
Ensembl chr14:35,113,184...35,295,972
JBrowse link
G NOS3 nitric oxide synthase 3 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr18:6,209,218...6,228,912
Ensembl chr18:6,209,156...6,228,938
JBrowse link
positive regulation of interleukin-4-dependent isotype switching to IgE isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TNFSF4 TNF superfamily member 4 involved_in ISO (MGI:3763508|PMID:12496423) BHF-UCL PMID:12496423 MGI:3763508 NCBI chr 9:115,535,185...115,857,457
Ensembl chr 9:115,550,567...115,857,448
JBrowse link
positive regulation of isotype switching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOSC3 exosome component 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5009766|PMID:21255825) Ensembl
MGI
PMID:21255825 GO_REF:0000107 MGI:5009766 NCBI chr 1:238,536,341...238,541,756
Ensembl chr 1:238,536,343...238,541,333
JBrowse link
G EXOSC6 exosome component 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5009766|PMID:21255825) Ensembl
MGI
PMID:21255825 GO_REF:0000107 MGI:5009766 NCBI chr 6:13,295,591...13,296,942
Ensembl chr 6:13,296,055...13,296,873
JBrowse link
G HMCES 5-hydroxymethylcytosine binding, ES cell specific involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:71,732,311...71,752,296
Ensembl chr13:71,732,277...71,753,504
JBrowse link
G KMT5B lysine methyltransferase 5B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:4,710,510...4,768,237
Ensembl chr 2:4,710,769...4,766,005
JBrowse link
G KMT5C lysine methyltransferase 5C involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:59,517,058...59,524,551
Ensembl chr 6:59,517,058...59,525,434
JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:71,773,680...71,779,192
Ensembl chr 6:71,773,681...71,779,183
JBrowse link
G PAXIP1 PAX interacting protein 1 involved_in ISO (MGI:4821506|PMID:20671152) UniProt PMID:20671152 MGI:4821506 NCBI chr18:3,066,853...3,111,239
Ensembl chr18:3,066,847...3,111,239
JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:769,518...832,036
Ensembl chr15:774,189...832,010
JBrowse link
G SHLD1 shieldin complex subunit 1 involved_in IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr17:14,610,723...14,706,082
Ensembl chr17:14,601,193...14,707,906
JBrowse link
G SHLD2 shieldin complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:88,005,599...88,121,155
Ensembl chr14:88,005,590...88,121,383
JBrowse link
G TFRC transferrin receptor involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr13:133,976,765...133,997,554
Ensembl chr13:133,970,594...134,000,278
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:127,958,500...128,032,370
Ensembl chr 1:127,958,518...128,028,718
JBrowse link
positive regulation of isotype switching to IgA isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MLH1 mutL homolog 1 involved_in ISO (MGI:1342394|PMID:10430621) CAFA PMID:10430621 MGI:1342394 NCBI chr13:21,791,276...21,877,789
Ensembl chr13:21,791,201...21,877,757
JBrowse link
G MSH2 mutS homolog 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:93,082,958...93,163,556
Ensembl chr 3:93,081,219...93,163,628
JBrowse link
G NSD2 nuclear receptor binding SET domain protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5462481|PMID:23241889) Ensembl
MGI
PMID:23241889 GO_REF:0000107 MGI:5462481 NCBI chr 8:938,832...1,018,032
Ensembl chr 8:963,884...1,018,025
JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component involved_in ISO (MGI:1342394|PMID:10430621) CAFA PMID:10430621 MGI:1342394 NCBI chr 3:5,118,002...5,145,634
Ensembl chr 3:5,113,230...5,145,634
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in
acts_upstream_of_or_within
ISS
ISO
(PMID:14988498) AgBase
MGI
PMID:14988498 GO_REF:0000024 NCBI chr 6:49,332,169...49,348,642
Ensembl chr 6:49,332,169...49,349,048
JBrowse link
G TNFSF13 TNF superfamily member 13 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(PMID:14988498)
(MGI:3037416|PMID:14988498)
GO_Central
MGI
PMID:14988498 PMID:21873635 MGI:3037416 NCBI chr12:52,853,646...52,857,033
Ensembl chr12:52,853,665...52,857,033
JBrowse link
positive regulation of isotype switching to IgE isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLCF1 cardiotrophin like cytokine factor 1 involved_in ISO (MGI:3777853|PMID:12023368) BHF-UCL PMID:12023368 MGI:3777853 NCBI chr 2:5,142,315...5,152,750 JBrowse link
G IL4 interleukin 4 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3037416|PMID:14988498)
GO_Central
MGI
PMID:14988498 PMID:21873635 MGI:3037416 NCBI chr 2:134,986,817...134,994,365
Ensembl chr 2:134,986,817...134,994,365
JBrowse link
G STAT6 signal transducer and activator of transcription 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1345885|PMID:10490661) Ensembl
MGI
PMID:10490661 GO_REF:0000107 MGI:1345885 NCBI chr 5:22,406,356...22,422,412
Ensembl chr 5:22,406,364...22,421,990
JBrowse link
positive regulation of isotype switching to IgG isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATAD5 ATPase family AAA domain containing 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5763555|PMID:25404367) Ensembl
MGI
PMID:25404367 GO_REF:0000107 MGI:5763555 NCBI chr12:42,874,705...42,920,438
Ensembl chr12:42,874,549...42,920,412
JBrowse link
G CD28 CD28 molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:62368|PMID:7688139) Ensembl
MGI
PMID:7688139 GO_REF:0000107 MGI:62368 NCBI chr15:107,128,103...107,155,431
Ensembl chr15:107,128,208...107,162,943
JBrowse link
G CD40 CD40 molecule involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:2670820|PMID:12882831)
GO_Central
MGI
PMID:12882831 PMID:21873635 MGI:2670820 NCBI chr17:48,286,116...48,298,188
Ensembl chr17:48,286,029...48,298,528
JBrowse link
G IFNG interferon gamma acts_upstream_of_or_within ISO (MGI:2670820|PMID:12882831) MGI PMID:12882831 MGI:2670820 NCBI chr 5:32,477,906...32,482,670
Ensembl chr 5:32,477,848...32,482,752
JBrowse link
G IL2 interleukin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:87443|PMID:1830926) Ensembl
MGI
PMID:1830926 GO_REF:0000107 MGI:87443 NCBI chr 8:101,640,938...101,645,683
Ensembl chr 8:101,640,944...101,645,609
JBrowse link
G IL4 interleukin 4 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:2670820|PMID:12882831), (MGI:3037416|PMID:14988498)
GO_Central
MGI
PMID:12882831 PMID:14988498 PMID:21873635 MGI:2670820 MGI:3037416 NCBI chr 2:134,986,817...134,994,365
Ensembl chr 2:134,986,817...134,994,365
JBrowse link
G MLH1 mutL homolog 1 involved_in ISO (MGI:1342394|PMID:10430621) CAFA PMID:10430621 MGI:1342394 NCBI chr13:21,791,276...21,877,789
Ensembl chr13:21,791,201...21,877,757
JBrowse link
G MSH2 mutS homolog 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:93,082,958...93,163,556
Ensembl chr 3:93,081,219...93,163,628
JBrowse link
G PAGR1 PAXIP1 associated glutamate rich protein 1 involved_in ISO (MGI:5752090|PMID:26744420) UniProt PMID:26744420 MGI:5752090 NCBI chr 3:18,052,679...18,056,920 JBrowse link
G PAXIP1 PAX interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:3,066,853...3,111,239
Ensembl chr18:3,066,847...3,111,239
JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component involved_in ISO (MGI:1342394|PMID:10430621) CAFA PMID:10430621 MGI:1342394 NCBI chr 3:5,118,002...5,145,634
Ensembl chr 3:5,113,230...5,145,634
JBrowse link
G PTPRC protein tyrosine phosphatase receptor type C involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:85031|PMID:9015183) Ensembl
MGI
PMID:9015183 GO_REF:0000107 MGI:85031 NCBI chr10:21,482,984...21,601,627
Ensembl chr10:21,466,373...21,764,560
JBrowse link
G TBX21 T-box transcription factor 21 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2670820|PMID:12882831) Ensembl
MGI
PMID:12882831 GO_REF:0000107 MGI:2670820 NCBI chr12:23,996,415...24,009,353
Ensembl chr12:23,996,415...24,009,355
JBrowse link
positive regulation of meiotic DNA double-strand break formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD31 ankyrin repeat domain 31 involved_in ISO (MGI:6316415|PMID:31003867), (MGI:6316551|PMID:31000436) UniProt PMID:31000436 PMID:31003867 MGI:6316415 MGI:6316551 NCBI chr 2:84,148,363...84,320,823
Ensembl chr 2:84,149,358...84,320,799
JBrowse link
positive regulation of miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LIN28B lin-28 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:71,173,291...71,296,131
Ensembl chr 1:71,166,786...71,296,861
JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:85,595,356...85,639,665
Ensembl chr 3:85,595,392...85,639,690
JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:93,541,334...93,551,200
Ensembl chr 6:93,541,334...93,551,195
JBrowse link
G ZSWIM8 zinc finger SWIM-type containing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:76,511,157...76,525,883
Ensembl chr14:76,511,181...76,525,880
JBrowse link
positive regulation of miRNA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:4868529|PMID:20975942) MGI PMID:20975942 MGI:4868529 NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,361,630...116,436,519
JBrowse link
G HRAS HRas proto-oncogene, GTPase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:299,662...302,539
Ensembl chr 2:299,660...302,501
JBrowse link
G NFKB1 nuclear factor kappa B subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:118,391,010...118,478,927
Ensembl chr 8:118,390,637...118,506,691
JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:6,594,869...6,602,684
Ensembl chr 2:6,593,969...6,603,471
JBrowse link
positive regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC10 histone deacetylase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:439,142...445,337
Ensembl chr 5:439,805...445,340
JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (PMID:15014079) UniProt PMID:15014079 NCBI chr11:7,195,556...7,321,071 JBrowse link
G PRKCG protein kinase C gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:56,213,479...56,235,683
Ensembl chr 6:56,213,483...56,234,656
JBrowse link
positive regulation of mitochondrial DNA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPARGC1A PPARG coactivator 1 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:17,841,844...18,527,953
Ensembl chr 8:17,841,844...17,961,909
JBrowse link
positive regulation of mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GRSF1 G-rich RNA sequence binding factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:67,586,935...67,607,422
Ensembl chr 8:67,586,730...67,608,259
JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:85,595,356...85,639,665
Ensembl chr 3:85,595,392...85,639,690
JBrowse link
G SUPV3L1 Suv3 like RNA helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:72,245,526...72,272,948
Ensembl chr14:72,245,600...72,277,049
JBrowse link
positive regulation of mitochondrial transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHCHD10 coiled-coil-helix-coiled-coil-helix domain containing 10 involved_in ISO (MGI:5920587|PMID:28585542) UniProt PMID:28585542 MGI:5920587 NCBI chr14:49,921,600...49,923,529
Ensembl chr14:49,921,594...49,928,405
JBrowse link
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:25,745,902...25,783,524
Ensembl chr16:25,745,321...25,783,610
JBrowse link
G SIRT3 sirtuin 3 involved_in ISO (MGI:6120139|PMID:23283301) UniProt PMID:23283301 MGI:6120139 NCBI chr 2:38,465...55,074
Ensembl chr 2:38,470...55,101
JBrowse link
positive regulation of mitotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:51,734,318...51,757,508
Ensembl chr 6:51,734,319...51,779,624
JBrowse link
positive regulation of mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1 cyclin B1 ISO c-mos polyadenylation RGD PMID:15291744 RGD:1578405 NCBI chr16:47,338,239...47,348,385
Ensembl chr16:47,338,110...47,348,381
JBrowse link
G CDC73 cell division cycle 73 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:575,075...667,618
Ensembl chr10:575,074...667,434
JBrowse link
G DHX36 DEAH-box helicase 36 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:94,298,790...94,350,333
Ensembl chr13:94,298,790...94,350,312
JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:119,804,992...119,842,343
Ensembl chr 1:119,805,039...119,897,073
JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:239,492,573...239,543,925
Ensembl chr 1:239,374,934...239,543,585
JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:133,177,209...133,192,935
Ensembl chr13:133,157,496...133,192,933
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:48,046,487...48,053,631
Ensembl chr 6:48,046,691...48,059,035
JBrowse link
G TMOD1 tropomodulin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:239,375,150...239,468,387
Ensembl chr 1:239,374,934...239,543,585
JBrowse link
positive regulation of mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT1 CCR4-NOT transcription complex subunit 1 involved_in ISO (PMID:22977175) BHF-UCL PMID:22977175 NCBI chr 6:20,271,593...20,372,300
Ensembl chr 6:20,271,596...20,372,280
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in ISO (PMID:23386060), (PMID:25038453) UniProt PMID:23386060 PMID:25038453 NCBI chr17:4,934,379...4,950,093
Ensembl chr17:4,933,453...4,950,346
JBrowse link
G CNOT8 CCR4-NOT transcription complex subunit 8 involved_in ISO (PMID:22977175) BHF-UCL PMID:22977175 NCBI chr16:68,329,785...68,352,020
Ensembl chr16:68,313,884...68,350,261
JBrowse link
G GTPBP1 GTP binding protein 1 involved_in ISO PMID:21515746 UniProt PMID:21515746 RGD:8553842 NCBI chr 5:9,294,329...9,322,192
Ensembl chr 5:9,247,203...9,321,899
JBrowse link
G HNRNPR heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:15798208 RGD:9854643 NCBI chr 6:81,203,067...81,239,823
Ensembl chr 6:81,184,833...81,239,135
JBrowse link
G KHSRP KH-type splicing regulatory protein involved_in ISO (PMID:16126846) UniProt PMID:16126846 NCBI chr 2:72,656,951...72,668,854
Ensembl chr 2:72,656,951...72,668,964
JBrowse link
G MOV10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:24726324) UniProt PMID:24726324 NCBI chr 4:107,738,089...107,763,873
Ensembl chr 4:107,738,112...107,763,596
JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:16410805) RGD
UniProt
PMID:737213 PMID:16410805 RGD:11554176 NCBI chr 3:85,595,356...85,639,665
Ensembl chr 3:85,595,392...85,639,690
JBrowse link
G PRR5L proline rich 5 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:24,646,865...24,812,642
Ensembl chr 2:24,646,867...24,812,610
JBrowse link
G RC3H1 ring finger and CCCH-type domains 1 involved_in ISO (MGI:6154479|PMID:25026077)
(MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671)
UniProt PMID:25026077 PMID:26000482 PMID:26255671 MGI:5706859 MGI:5751631 MGI:6154479 NCBI chr 9:116,204,807...116,292,455
Ensembl chr 9:116,209,094...116,292,366
JBrowse link
G UPF1 UPF1 RNA helicase and ATPase involved_in ISO (PMID:25225333), (PMID:26255671)
(PMID:24726324)
UniProt PMID:24726324 PMID:25225333 PMID:26255671 NCBI chr 2:58,975,013...59,013,546
Ensembl chr 2:58,975,015...59,013,495
JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in ISO (PMID:19909337)
(MGI:3842851|PMID:19322177), (MGI:5706859|PMID:26000482), (MGI:5706909|PMID:23185455), (MGI:5751631|PMID:26255671)
UniProt PMID:19322177 PMID:19909337 PMID:23185455 PMID:26000482 PMID:26255671 MGI:3842851 MGI:5706859 MGI:5706909 MGI:5751631 NCBI chr 6:93,541,334...93,551,200
Ensembl chr 6:93,541,334...93,551,195
JBrowse link
G ZC3HAV1 zinc finger CCCH-type containing, antiviral 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:10,529,805...10,588,913
Ensembl chr18:10,509,629...10,588,832
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in ISO (MGI:5795825|PMID:15634918) UniProt PMID:15634918 MGI:5795825 NCBI chr 6:48,063,732...48,066,235
Ensembl chr 6:48,052,137...48,066,257
JBrowse link
positive regulation of mRNA cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT21 nudix hydrolase 21 involved_in ISO (PMID:15937220) UniProt PMID:15937220 NCBI chr 6:29,339,893...29,359,596
Ensembl chr 6:29,339,841...29,363,315
JBrowse link
positive regulation of mRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 ISO RGD PMID:9792439 RGD:10041038 NCBI chr 5:62,811,819...62,820,532
Ensembl chr 5:62,810,879...62,820,173
JBrowse link
positive regulation of mRNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPEB1 cytoplasmic polyadenylation element binding protein 1 involved_in ISO (PMID:28383716) UniProt PMID:28383716 NCBI chr 7:52,329,054...52,382,408
Ensembl chr 7:52,304,472...52,383,734
JBrowse link
G CPEB3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (MGI:5300629|PMID:22153079) UniProt PMID:22153079 MGI:5300629 NCBI chr14:103,675,164...103,871,245
Ensembl chr14:103,675,175...103,871,227
JBrowse link
G HSF1 heat shock transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:463,531...486,483
Ensembl chr 4:461,559...486,473
JBrowse link
G NUDT21 nudix hydrolase 21 involved_in ISO (PMID:15937220) UniProt PMID:15937220 NCBI chr 6:29,339,893...29,359,596
Ensembl chr 6:29,339,841...29,363,315
JBrowse link
positive regulation of mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADARB1 adenosine deaminase RNA specific B1 ISO RGD PMID:10331393 RGD:10450893 NCBI chr13:207,746,915...207,791,809
Ensembl chr13:207,693,698...207,791,796
JBrowse link
positive regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELF3 CUGBP Elav-like family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:97,513,563...97,535,426
Ensembl chr 4:97,514,224...97,528,481
JBrowse link
G CELF4 CUGBP Elav-like family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:121,065,604...121,381,052
Ensembl chr 6:121,066,749...121,381,029
JBrowse link
G CIRBP cold inducible RNA binding protein involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:77,185,295...77,194,373
Ensembl chr 2:77,047,910...77,200,559
JBrowse link
G DAZAP1 DAZ associated protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
(PMID:21873635)
(MGI:5532638|PMID:23636947)
GO_Central
MGI
Ensembl
PMID:21873635 PMID:23636947 GO_REF:0000107 MGI:5532638 NCBI chr 2:77,048,890...77,070,565
Ensembl chr 2:77,047,910...77,200,559
JBrowse link
G EIF4A3 eukaryotic translation initiation factor 4A3 acts_upstream_of_or_within ISO (MGI:3814796|PMID:18480465) MGI PMID:18480465 MGI:3814796 NCBI chr12:2,285,679...2,311,750
Ensembl chr12:2,285,225...2,311,750
JBrowse link
G HMX2 H6 family homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5532638|PMID:23636947) Ensembl
MGI
PMID:23636947 GO_REF:0000107 MGI:5532638 NCBI chr14:132,691,108...132,699,477
Ensembl chr14:132,691,119...132,699,485
JBrowse link
G HSPA8 heat shock protein family A (Hsp70) member 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5532638|PMID:23636947) Ensembl
MGI
PMID:23636947 GO_REF:0000107 MGI:5532638 NCBI chr 9:49,982,278...49,986,760
Ensembl chr 9:49,982,284...49,990,508
JBrowse link
G LMNTD2 lamin tail domain containing 2 acts_upstream_of_or_within ISO (MGI:5532638|PMID:23636947) MGI PMID:23636947 MGI:5532638 NCBI chr 2:323,642...329,782
Ensembl chr 2:323,647...329,660
JBrowse link
G LOC110257929 RNA-binding motif protein, X chromosome-like involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  Y:41,171,519...41,182,903 JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:239,492,573...239,543,925
Ensembl chr 1:239,374,934...239,543,585
JBrowse link
G NCL nucleolin involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:132,163,453...132,174,214
Ensembl chr15:132,163,002...132,174,220
JBrowse link
G NUP98 nucleoporin 98 and 96 precursor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:6,319,616...6,419,652
Ensembl chr 9:6,319,586...6,419,660
JBrowse link
G OBI1 ORC ubiquitin ligase 1 acts_upstream_of_or_within ISO (MGI:5532638|PMID:23636947) MGI PMID:23636947 MGI:5532638 NCBI chr11:50,741,893...50,786,824
Ensembl chr11:50,740,916...50,786,774
JBrowse link
G PRDX6 peroxiredoxin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:115,857,629...115,868,898
Ensembl chr 9:115,857,644...115,868,892
JBrowse link
G PRPF19 pre-mRNA processing factor 19 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3814796|PMID:18480465) Ensembl
MGI
PMID:18480465 GO_REF:0000107 MGI:3814796 NCBI chr 2:10,851,779...10,860,315
Ensembl chr 2:10,851,579...10,860,838
JBrowse link
G RBM3 RNA binding motif protein 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:42,704,019...42,707,587
Ensembl chr  X:42,704,026...42,707,584
JBrowse link
G RBMX RNA binding motif protein X-linked involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:111,965,859...111,974,544
Ensembl chr  X:111,962,632...112,011,262
JBrowse link
G SF3B4 splicing factor 3b subunit 4 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:5532638|PMID:23636947)
GO_Central
MGI
PMID:21873635 PMID:23636947 MGI:5532638 NCBI chr 4:99,123,564...99,129,218
Ensembl chr 4:99,123,585...99,129,218
JBrowse link
G SLC39A5 solute carrier family 39 member 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5532638|PMID:23636947) Ensembl
MGI
PMID:23636947 GO_REF:0000107 MGI:5532638 NCBI chr 5:21,631,874...21,640,476
Ensembl chr 5:21,631,924...21,637,650
JBrowse link
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5532638|PMID:23636947) Ensembl
MGI
PMID:23636947 GO_REF:0000107 MGI:5532638 NCBI chr 6:54,288,354...54,304,272
Ensembl chr 6:54,288,354...54,304,270
JBrowse link
G SNW1 SNW domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:100,718,298...100,749,414
Ensembl chr 7:100,718,036...100,749,356
JBrowse link
G THRAP3 thyroid hormone receptor associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:92,350,021...92,412,335
Ensembl chr 6:92,350,073...92,412,330
JBrowse link
G TMOD1 tropomodulin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:239,375,150...239,468,387
Ensembl chr 1:239,374,934...239,543,585
JBrowse link
G TRA2A transformer 2 alpha homolog involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:5304203|PMID:22194695)
GO_Central
MGI
PMID:21873635 PMID:22194695 MGI:5304203 NCBI chr 9:92,299,171...92,323,789
Ensembl chr 9:92,294,917...92,323,794
JBrowse link
G TRA2B transformer 2 beta homolog involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:5304203|PMID:22194695)
GO_Central
MGI
PMID:21873635 PMID:22194695 MGI:5304203 NCBI chr13:123,760,008...123,780,919
Ensembl chr13:123,754,859...123,780,920
JBrowse link
G ZFP64 ZFP64 zinc finger protein acts_upstream_of_or_within ISO (MGI:5532638|PMID:23636947) MGI PMID:23636947 MGI:5532638 NCBI chr17:53,364,021...53,459,587
Ensembl chr17:53,369,672...53,459,599
JBrowse link
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO2 argonaute RISC catalytic component 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:2,966,794...3,012,388
Ensembl chr 4:2,919,529...3,015,367
JBrowse link
G CNOT1 CCR4-NOT transcription complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:20,271,593...20,372,300
Ensembl chr 6:20,271,596...20,372,280
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:4,934,379...4,950,093
Ensembl chr17:4,933,453...4,950,346
JBrowse link
G CPEB3 cytoplasmic polyadenylation element binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:103,675,164...103,871,245
Ensembl chr14:103,675,175...103,871,227
JBrowse link
G DHX36 DEAH-box helicase 36 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:94,298,790...94,350,333
Ensembl chr13:94,298,790...94,350,312
JBrowse link
G NANOS1 nanos C2HC-type zinc finger 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:128,962,311...128,964,207
Ensembl chr14:128,962,375...128,963,229
JBrowse link
G NANOS2 nanos C2HC-type zinc finger 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:52,218,889...52,219,834
Ensembl chr 6:52,219,418...52,219,834
JBrowse link
G PABPC1 poly(A) binding protein cytoplasmic 1 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chr 4:36,137,644...36,228,075
Ensembl chr 4:36,137,639...36,227,690
JBrowse link
G TNRC6B trinucleotide repeat containing adaptor 6B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:8,052,434...8,311,811
Ensembl chr 5:8,060,979...8,311,418
JBrowse link
G TNRC6C trinucleotide repeat containing adaptor 6C involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:3,847,522...3,939,054
Ensembl chr12:3,846,428...3,935,391
JBrowse link
G TOB1 transducer of ERBB2, 1 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chr12:27,116,579...27,119,906
Ensembl chr12:27,115,824...27,119,928
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:48,063,732...48,066,235
Ensembl chr 6:48,052,137...48,066,257
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in ISO PMID:12748283 UniProt PMID:12748283 RGD:11344945 NCBI chr 7:92,490,069...92,495,864
Ensembl chr 7:92,490,011...92,495,574
JBrowse link
G ZFP36L2 ZFP36 ring finger protein like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:97,200,395...97,203,094
Ensembl chr 3:97,200,406...97,204,700
JBrowse link
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO2 argonaute RISC catalytic component 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:2,966,794...3,012,388
Ensembl chr 4:2,919,529...3,015,367
JBrowse link
G BTG2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO (PMID:18337750) MGI PMID:18337750 NCBI chr 9:64,033,853...64,037,795 JBrowse link
G CNOT1 CCR4-NOT transcription complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:20,271,593...20,372,300
Ensembl chr 6:20,271,596...20,372,280
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:4,934,379...4,950,093
Ensembl chr17:4,933,453...4,950,346
JBrowse link
G CPEB3 cytoplasmic polyadenylation element binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:103,675,164...103,871,245
Ensembl chr14:103,675,175...103,871,227
JBrowse link
G EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:48,156,835...48,204,701
Ensembl chr14:48,156,727...48,204,926
JBrowse link
G PABPC1 poly(A) binding protein cytoplasmic 1 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chr 4:36,137,644...36,228,075
Ensembl chr 4:36,137,639...36,227,690
JBrowse link
G POLR2G RNA polymerase II subunit G involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:9,004,388...9,008,631
Ensembl chr 2:9,003,781...9,017,779
JBrowse link
G TNRC6A trinucleotide repeat containing adaptor 6A involved_in IBA (PMID:21873635) GO_Central PMID:21873635
G TNRC6B trinucleotide repeat containing adaptor 6B involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:8,052,434...8,311,811
Ensembl chr 5:8,060,979...8,311,418
JBrowse link
G TNRC6C trinucleotide repeat containing adaptor 6C involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr12:3,847,522...3,939,054
Ensembl chr12:3,846,428...3,935,391
JBrowse link
G TOB1 transducer of ERBB2, 1 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chr12:27,116,579...27,119,906
Ensembl chr12:27,115,824...27,119,928
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:48,063,732...48,066,235
Ensembl chr 6:48,052,137...48,066,257
JBrowse link
positive regulation of nuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB2 high mobility group box 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:16,709,966...16,712,288
Ensembl chr14:16,710,047...16,717,126
JBrowse link
positive regulation of nucleic acid-templated transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZMIZ1 zinc finger MIZ-type containing 1 involved_in ISO (PMID:14609956), (PMID:16777850) UniProt PMID:14609956 PMID:16777850 NCBI chr14:81,409,067...81,647,808
Ensembl chr14:81,455,127...81,647,949
JBrowse link
positive regulation of pri-miRNA transcription by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APLN apelin involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:106,236,746...106,246,563
Ensembl chr  X:106,236,748...106,246,378
JBrowse link
G ATOH8 atonal bHLH transcription factor 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:58,964,541...59,001,620
Ensembl chr 3:58,964,541...59,001,146
JBrowse link
G BMP2 bone morphogenetic protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:15,750,487...15,762,982
Ensembl chr17:15,749,835...15,761,215
JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,134...183,792,417
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,793
JBrowse link
G CTCF CCCTC-binding factor involved_in ISO PMID:27124358 BHF-UCL PMID:27124358 RGD:11344932 NCBI chr 6:28,188,002...28,261,009
Ensembl chr 6:28,195,668...28,261,009
JBrowse link
G EGR1 early growth response 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:140,440,829...140,445,302
Ensembl chr 2:140,441,421...140,445,296
JBrowse link
G ETS1 ETS proto-oncogene 1, transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:55,377,264...55,512,180
Ensembl chr 9:55,377,264...55,512,115
JBrowse link
G FOS Fos proto-oncogene, AP-1 transcription factor subunit involved_in ISO PMID:18384814 BHF-UCL PMID:18384814 RGD:10402042 NCBI chr 7:98,449,508...98,451,971
Ensembl chr 7:98,449,349...98,455,554
JBrowse link
G FOSL1 FOS like 1, AP-1 transcription factor subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:6,430,158...6,436,173
Ensembl chr 2:6,430,153...6,436,173
JBrowse link
G FOXO3 forkhead box O3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:74,626,673...74,760,323
Ensembl chr 1:74,628,217...74,760,328
JBrowse link
G GATA2 GATA binding protein 2 involved_in IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr13:71,981,139...71,997,626
Ensembl chr13:71,984,063...71,997,622
JBrowse link
G GATA3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:63,367,684...63,397,977
Ensembl chr10:63,367,660...63,388,859
JBrowse link
G GNL3 G protein nucleolar 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:34,820,243...34,828,523
Ensembl chr13:34,814,901...34,828,517
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:190,625,436...190,673,926
Ensembl chr 1:190,625,181...190,674,850
JBrowse link
G IL10 interleukin 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:67,400,727...67,405,941
Ensembl chr 9:67,400,727...67,405,711
JBrowse link
G JUN Jun proto-oncogene, AP-1 transcription factor subunit involved_in ISO (PMID:19962668), (PMID:24375836)
PMID:18384814
BHF-UCL PMID:18384814 PMID:19962668 PMID:24375836 RGD:10402042 NCBI chr 6:153,686,425...153,687,635 JBrowse link
G KLF4 Kruppel like factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:248,604,817...248,609,574
Ensembl chr 1:248,604,820...248,609,574
JBrowse link
G KLF5 Kruppel like factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:45,370,009...45,386,673
Ensembl chr11:45,369,797...45,388,314
JBrowse link
G MRTFA myocardin related transcription factor A involved_in ISO (PMID:23764775) ARUK-UCL PMID:23764775 NCBI chr 5:7,751,350...7,975,927
Ensembl chr 5:7,757,950...7,975,926
JBrowse link
G MRTFB myocardin related transcription factor B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:28,964,758...29,240,125
Ensembl chr 3:28,964,754...29,167,631
JBrowse link
G NFKB1 nuclear factor kappa B subunit 1 involved_in ISO PMID:24676391 BHF-UCL PMID:24676391 RGD:10400879 NCBI chr 8:118,391,010...118,478,927
Ensembl chr 8:118,390,637...118,506,691
JBrowse link
G NGFR nerve growth factor receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:25,699,410...25,720,355
Ensembl chr12:25,699,427...25,720,357
JBrowse link
G NR3C1 nuclear receptor subfamily 3 group C member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:144,822,937...144,956,451
Ensembl chr 2:144,822,937...144,956,095
JBrowse link
G PDGFB platelet derived growth factor subunit B involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 5:8,986,461...9,007,446 JBrowse link
G PPARG peroxisome proliferator activated receptor gamma involved_in ISO (PMID:28566713) BHF-UCL PMID:28566713 NCBI chr13:68,301,566...68,433,951
Ensembl chr13:68,302,655...68,433,947
JBrowse link
G PRL prolactin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:17,451,367...17,463,771
Ensembl chr 7:17,451,367...17,463,741
JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:6,594,869...6,602,684
Ensembl chr 2:6,593,969...6,603,471
JBrowse link
G SMAD1 SMAD family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:82,907,557...82,987,909
Ensembl chr 8:82,908,527...82,968,994
JBrowse link
G SMAD3 SMAD family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:164,998,457...165,124,455
Ensembl chr 1:164,998,083...165,124,454
JBrowse link
G SMAD4 SMAD family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:100,521,843...100,633,501
Ensembl chr 1:100,514,791...100,628,029
JBrowse link
G SMAD6 SMAD family member 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:164,652,602...164,735,084
Ensembl chr 1:164,657,086...164,735,083
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,298
JBrowse link
G SPI1 Spi-1 proto-oncogene involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:15,227,850...15,245,679
Ensembl chr 2:15,227,829...15,245,667
JBrowse link
G SREBF1 sterol regulatory element binding transcription factor 1 involved_in ISO (PMID:24296663)
(MGI:5501359|PMID:23823476)
BHF-UCL PMID:23823476 PMID:24296663 MGI:5501359 NCBI chr12:60,733,967...60,750,951
Ensembl chr12:60,733,907...60,751,265
JBrowse link
G SREBF2 sterol regulatory element binding transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:6,719,484...6,784,724
Ensembl chr 5:6,719,487...6,784,672
JBrowse link
G SRF serum response factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:38,213,300...38,223,686
Ensembl chr 7:38,213,063...38,222,140
JBrowse link
G STAT3 signal transducer and activator of transcription 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:20,407,316...20,471,091
Ensembl chr12:20,407,233...20,472,993
JBrowse link
G TEAD1 TEA domain transcription factor 1 involved_in ISO (PMID:26045994) BHF-UCL PMID:26045994 NCBI chr 2:46,396,490...46,670,619
Ensembl chr 2:46,399,647...46,670,615
JBrowse link
G TERT telomerase reverse transcriptase involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:79,258,591...79,276,421
Ensembl chr16:79,258,591...79,276,421
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in ISO (PMID:26311719), (PMID:26493107) BHF-UCL PMID:26311719 PMID:26493107 NCBI chr 6:49,332,169...49,348,642
Ensembl chr 6:49,332,169...49,349,048
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:8,306,136...8,435,307
Ensembl chr10:8,305,424...8,405,771
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in ISO PMID:21704009 BHF-UCL PMID:21704009 RGD:12792988 NCBI chr 1:240,842,735...240,918,267
Ensembl chr 1:240,859,270...240,918,528
JBrowse link
G TNF tumor necrosis factor involved_in
acts_upstream_of
IEA
ISO
(PMID:22499991) Ensembl
BHF-UCL
PMID:22499991 GO_REF:0000107 NCBI chr 7:23,699,635...23,702,393
Ensembl chr 7:23,699,636...23,703,655
JBrowse link
G TP53 tumor protein p53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,643...52,953,819
JBrowse link
G WT1 WT1 transcription factor involved_in ISO (PMID:23042785) ARUK-UCL PMID:23042785 NCBI chr 2:28,411,467...28,456,007
Ensembl chr 2:28,411,794...28,456,003
JBrowse link
positive regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,134...183,792,417
JBrowse link
G DDX5 DEAD-box helicase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:14,571,712...14,580,740
Ensembl chr12:14,571,310...14,601,576
JBrowse link
G EGFR epidermal growth factor receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:139,302,410...139,474,632
Ensembl chr 9:139,300,022...139,478,882
JBrowse link
G IL6 interleukin 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:27252421) ARUK-UCL
Ensembl
PMID:27252421 GO_REF:0000107 NCBI chr 9:91,506,421...91,510,830
Ensembl chr 9:91,506,340...91,511,263
JBrowse link
G LIN28A lin-28 homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:83,806,178...83,818,550
Ensembl chr 6:83,806,122...83,818,631
JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:164,381,892...164,469,313
Ensembl chr 1:164,381,845...164,471,226
JBrowse link
G MAP2K2 mitogen-activated protein kinase kinase 2 involved_in ISO (PMID:24375836) BHF-UCL PMID:24375836 NCBI chr 2:74,626,739...74,651,352
Ensembl chr 2:74,626,658...74,651,348
JBrowse link
G MYOCD myocardin involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:56,931,628...57,029,258
Ensembl chr12:56,931,317...57,029,538
JBrowse link
G NR2F1 nuclear receptor subfamily 2 group F member 1 acts_upstream_of_or_within ISO (MGI:5574156|PMID:24349493) MGI PMID:24349493 MGI:5574156 NCBI chr 2:100,447,661...100,457,510
Ensembl chr 2:100,447,847...100,457,904
JBrowse link
G RIPK1 receptor interacting serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:1,841,143...1,880,705
Ensembl chr 7:1,841,236...1,880,699
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in ISO (PMID:18548003) BHF-UCL PMID:18548003 NCBI chr 6:49,332,169...49,348,642
Ensembl chr 6:49,332,169...49,349,048
JBrowse link
G TP53 tumor protein p53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,643...52,953,819
JBrowse link
positive regulation of reciprocal meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD51AP1 RAD51 associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:65,872,277...65,897,210
Ensembl chr 5:65,872,281...65,897,215
JBrowse link
G UBE2B ubiquitin conjugating enzyme E2 B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2450033|PMID:12556476) Ensembl
MGI
PMID:12556476 GO_REF:0000107 MGI:2450033 NCBI chr 2:136,652,764...136,667,213
Ensembl chr 2:136,652,784...136,667,949
JBrowse link
positive regulation of RNA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC110258578 interleukin-1 beta-like involved_in ISO (PMID:29384235) ARUK-UCL PMID:29384235
G NMD3 NMD3 ribosome export adaptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:100,924,685...100,992,009
Ensembl chr13:100,807,843...101,002,050
JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHR aryl hydrocarbon receptor acts_upstream_of_or_within ISO (MGI:62922|PMID:8215422) MGI PMID:8215422 MGI:62922 NCBI chr 9:86,511,866...86,555,950
Ensembl chr 9:86,511,369...86,555,943
JBrowse link
G CAND1 cullin associated and neddylation dissociated 1 involved_in ISO PMID:10567521 UniProt PMID:10567521 RGD:8553447 NCBI chr 5:31,657,508...31,700,163
Ensembl chr 5:31,657,623...31,696,866
JBrowse link
G CREB1 cAMP responsive element binding protein 1 ISO RGD PMID:16891311 RGD:1625706 NCBI chr15:110,705,548...110,773,037
Ensembl chr15:110,697,408...110,771,755
JBrowse link
G ESR1 estrogen receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:14,217,032...14,604,906
Ensembl chr 1:14,217,036...14,493,363
JBrowse link
G IKZF1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (MGI:5317044|PMID:21245044) MGI PMID:21245044 MGI:5317044 NCBI chr 9:136,372,202...136,464,942
Ensembl chr 9:136,372,724...136,464,942
JBrowse link
G PSMC2 proteasome 26S subunit, ATPase 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:103,362,684...103,376,048
Ensembl chr 9:103,362,598...103,376,346
JBrowse link
G PSMC3 proteasome 26S subunit, ATPase 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:15,185,482...15,191,189
Ensembl chr 2:15,066,547...15,193,085
JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:48,406,237...48,414,470
Ensembl chr 6:48,406,376...48,416,216
JBrowse link
G PSMC6 proteasome 26S subunit, ATPase 6 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:182,329,070...182,354,959
Ensembl chr 1:182,328,521...182,354,958
JBrowse link
G RAPSN receptor associated protein of the synapse involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:15,166,968...15,181,011
Ensembl chr 2:15,066,547...15,193,085
JBrowse link
G TP53 tumor protein p53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,643...52,953,819
JBrowse link
G WNT10B Wnt family member 10B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3820325|PMID:19056892) Ensembl
MGI
PMID:19056892 GO_REF:0000107 MGI:3820325 NCBI chr 5:14,997,377...15,013,928
Ensembl chr 5:14,997,381...15,013,919
JBrowse link
positive regulation of RNA splicing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:201,008,506...201,159,946
Ensembl chr13:201,008,830...201,159,954
JBrowse link
G ERN1 endoplasmic reticulum to nucleus signaling 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:14,881,913...14,963,290
Ensembl chr12:14,881,923...14,997,426
JBrowse link
G HABP4 hyaluronan binding protein 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:25,599,413...25,636,000
Ensembl chr10:25,598,175...25,636,048
JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:22684629 RGD:10002775 NCBI chr10:30,975,639...30,987,955
Ensembl chr10:30,975,693...30,987,940
JBrowse link
G HNRNPLL heterogeneous nuclear ribonucleoprotein L like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:101,753,330...101,795,356
Ensembl chr 3:101,753,278...101,802,062
JBrowse link
G ICAM2 intercellular adhesion molecule 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:14,986,636...14,991,639
Ensembl chr12:14,881,923...14,997,426
JBrowse link
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 ISO RGD PMID:11118435 RGD:632715 NCBI chr 4:6,289,577...6,446,494
Ensembl chr 4:6,282,075...6,446,390
JBrowse link
G PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:46,434,757...46,523,626
Ensembl chr16:46,434,873...46,523,609
JBrowse link
G POLR2A RNA polymerase II subunit A involved_in ISO (PMID:21536736) UniProt PMID:21536736 NCBI chr12:52,779,833...52,806,210
Ensembl chr12:52,779,825...52,810,165
JBrowse link
G RBM20 RNA binding motif protein 20 involved_in ISO PMID:22466703
(MGI:5442495|PMID:22466703)
(PMID:22466703)
UniProt PMID:22466703 MGI:5442495 RGD:7241566 NCBI chr14:121,058,896...121,269,824 JBrowse link
G RBM22 RNA binding motif protein 22 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:151,663,182...151,672,337
Ensembl chr 2:151,663,182...151,672,359
JBrowse link
G SETX senataxin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:272,093,449...272,170,857
Ensembl chr 1:272,095,358...272,170,750
JBrowse link
G SLC38A2 solute carrier family 38 member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:77,113,491...77,127,715
Ensembl chr 5:77,113,493...77,127,650
JBrowse link
G SMN1 survival of motor neuron 1, telomeric acts_upstream_of_or_within ISO (MGI:5318917|PMID:22037760) MGI PMID:22037760 MGI:5318917 NCBI chr16:47,738,776...47,777,381 JBrowse link
G SRSF1 serine and arginine rich splicing factor 1 ISO RGD PMID:16308321 RGD:11038784 NCBI chr12:34,278,363...34,282,164
Ensembl chr12:34,272,068...34,282,137
JBrowse link
G SRSF5 serine and arginine rich splicing factor 5 ISO RGD PMID:9199345 RGD:11039429 NCBI chr 7:93,393,379...93,398,510
Ensembl chr 7:93,393,426...93,403,015
JBrowse link
G U2AF2 U2 small nuclear RNA auxiliary factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:59,773,205...59,789,403
Ensembl chr 6:59,774,078...59,789,396
JBrowse link
G ZPR1 ZPR1 zinc finger involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:44,167,422...44,178,137
Ensembl chr 9:44,166,040...44,180,307
JBrowse link
positive regulation of rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BUD23 BUD23 rRNA methyltransferase and ribosome maturation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:10,960,037...10,973,084
Ensembl chr 3:10,960,091...10,973,083
JBrowse link
G DIMT1 DIM1 rRNA methyltransferase and ribosome maturation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:41,098,146...41,111,203
Ensembl chr16:41,098,341...41,111,229
JBrowse link
G HEATR1 HEAT repeat containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:54,821,073...54,870,873
Ensembl chr14:54,821,171...54,869,857
JBrowse link
G RIOK1 RIO kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:4,750,766...4,776,678
Ensembl chr 7:4,750,759...4,780,002
JBrowse link
G RIOK2 RIO kinase 2 involved_in ISO (PMID:19564402) UniProt PMID:19564402 NCBI chr 2:103,802,044...103,823,566 JBrowse link
G SIRT7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:1,078,155...1,084,112
Ensembl chr12:1,077,868...1,084,119
JBrowse link
G TRMT112 tRNA methyltransferase activator subunit 11-2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:7,802,184...7,803,556
Ensembl chr 2:7,802,179...7,805,829
JBrowse link
G UTP15 UTP15 small subunit processome component involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:82,715,411...82,733,042
Ensembl chr 2:82,715,416...82,734,118
JBrowse link
G WDR43 WD repeat domain 43 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:110,317,549...110,365,108
Ensembl chr 3:110,231,955...110,365,062
JBrowse link
G WDR75 WD repeat domain 75 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:93,981,054...94,026,479
Ensembl chr15:93,981,215...94,026,707
JBrowse link
positive regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP1 poly(ADP-ribose) polymerase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:14,203,157...14,241,164
Ensembl chr10:14,203,159...14,241,197
JBrowse link
G XRCC1 X-ray repair cross complementing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:50,403,691...50,425,730
Ensembl chr 6:50,403,686...50,425,710
JBrowse link
positive regulation of snRNA transcription by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LARP7 La ribonucleoprotein 7, transcriptional regulator involved_in ISO (PMID:28254838) UniProt PMID:28254838 NCBI chr 8:110,069,565...110,089,789
Ensembl chr 8:110,069,829...110,089,708
JBrowse link
G MEPCE methylphosphate capping enzyme involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:8,356,602...8,361,798
Ensembl chr 3:8,357,289...8,365,563
JBrowse link
G MYOD1 myogenic differentiation 1 involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 2:41,422,522...41,424,236
Ensembl chr 2:41,415,735...41,425,234
JBrowse link
G ZNF143 zinc finger protein 143 involved_in ISO (PMID:9009278) GO_Central PMID:9009278 NCBI chr 9:45,164...104,776
Ensembl chr 9:45,164...104,736
JBrowse link
positive regulation of strand invasion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WRN WRN RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:53,966,968...54,094,855
Ensembl chr15:53,966,972...54,094,587
JBrowse link
positive regulation of t-circle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in ISO (MGI:5645200|PMID:22579284) BHF-UCL PMID:22579284 MGI:5645200 NCBI chr 6:51,783,537...51,808,898 JBrowse link
G SLX1A SLX1 homolog A, structure-specific endonuclease subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:18,346,501...18,349,509 JBrowse link
G SLX4 SLX4 structure-specific endonuclease subunit involved_in ISO (MGI:5645200|PMID:22579284) BHF-UCL PMID:22579284 MGI:5645200 NCBI chr 3:38,646,904...38,670,173
Ensembl chr 3:38,646,938...38,670,166
JBrowse link
positive regulation of telomerase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACD ACD shelterin complex subunit and telomerase recruitment factor involved_in IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 6:28,277,649...28,280,409
Ensembl chr 6:28,277,611...28,280,405
JBrowse link
G AURKB aurora kinase B involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:53,410,833...53,426,165
Ensembl chr12:53,410,176...53,423,225
JBrowse link
G CCT2 chaperonin containing TCP1 subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:33,858,514...33,873,596
Ensembl chr 5:33,858,572...34,033,939
JBrowse link
G CCT4 chaperonin containing TCP1 subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:79,924,338...79,941,926
Ensembl chr 3:79,924,507...79,946,236
JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of
IEA
ISO
(MGI:5428344|PMID:22723415) Ensembl
BHF-UCL
PMID:22723415 GO_REF:0000107 MGI:5428344 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,137,173...25,208,311
JBrowse link
G DKC1 dyskerin pseudouridine synthase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3047190|PMID:15240872) Ensembl
MGI
PMID:15240872 GO_REF:0000107 MGI:3047190 NCBI chr  X:125,218,928...125,228,881
Ensembl chr  X:125,218,923...125,229,529
JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:136,617,041...136,629,293
Ensembl chr 1:136,617,069...136,629,292
JBrowse link
G GRHL2 grainyhead like transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:35,368,788...35,565,394
Ensembl chr 4:35,371,136...35,564,919
JBrowse link
G HMBOX1 homeobox containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:12,692,607...12,895,078
Ensembl chr14:12,692,588...12,882,576
JBrowse link
G HSP90AA1 heat shock protein 90 alpha family class A member 1 involved_in IEA Ensembl GO_REF:0000107
G HSP90AB1 heat shock protein 90 alpha family class B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:39,237,299...39,250,479
Ensembl chr 7:39,244,458...39,254,002
JBrowse link
G KLF4 Kruppel like factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:248,604,817...248,609,574
Ensembl chr 1:248,604,820...248,609,574
JBrowse link
G MAP2K7 mitogen-activated protein kinase kinase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:71,299,010...71,308,432
Ensembl chr 2:71,298,322...71,308,165
JBrowse link
G MAP3K4 mitogen-activated protein kinase kinase kinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:6,891,255...7,049,784
Ensembl chr 1:6,891,255...7,050,374
JBrowse link
G MAPK1 mitogen-activated protein kinase 1 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr14:50,083,079...50,165,528
Ensembl chr14:50,082,896...50,165,523
JBrowse link
G MAPK15 mitogen-activated protein kinase 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:909,266...915,537
Ensembl chr 4:902,439...915,475
JBrowse link
G MAPK3 mitogen-activated protein kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:18,291,444...18,299,410
Ensembl chr 3:18,291,445...18,299,567
JBrowse link
G MAPKAPK5 MAPK activated protein kinase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:39,852,537...39,885,898
Ensembl chr14:39,846,606...39,886,455
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor involved_in ISO (MGI:5810267|PMID:9637678) BHF-UCL PMID:9637678 MGI:5810267 NCBI chr 4:12,455,141...12,460,360
Ensembl chr 4:12,455,119...12,461,078
JBrowse link
G NAF1 nuclear assembly factor 1 ribonucleoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:51,972,288...52,012,818
Ensembl chr 8:51,968,483...52,012,936
JBrowse link
G NEK2 NIMA related kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:131,547,044...131,560,527
Ensembl chr 9:131,547,084...131,560,527
JBrowse link
G NEK7 NIMA related kinase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:20,966,660...21,124,283
Ensembl chr10:20,997,243...21,124,283
JBrowse link
G NVL nuclear VCP like involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr10:12,564,891...12,670,641
Ensembl chr10:12,556,060...12,670,625
JBrowse link
G PARM1 prostate androgen-regulated mucin-like protein 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:70,788,134...70,892,642
Ensembl chr 8:70,788,193...70,896,558
JBrowse link
G PARN poly(A)-specific ribonuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:28,616,808...28,802,506
Ensembl chr 3:28,612,269...28,802,505
JBrowse link
G PKIB cAMP-dependent protein kinase inhibitor beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:39,913,753...40,022,971
Ensembl chr 1:39,913,760...40,022,715
JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:54,870,359...54,880,814
Ensembl chr 6:54,870,361...54,880,807
JBrowse link
G POT1 protection of telomeres 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:22,885,704...22,981,893
Ensembl chr18:22,827,029...22,981,890
JBrowse link
G PRKCQ protein kinase C theta involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:64,442,588...64,596,528
Ensembl chr10:64,443,251...64,600,339
JBrowse link
G PTGES3 prostaglandin E synthase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:22,000,335...22,022,830
Ensembl chr 5:22,000,339...22,021,663
JBrowse link
G TCP1 t-complex 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:7,590,140...7,600,709
Ensembl chr 1:7,589,521...7,601,795
JBrowse link
G TNKS tankyrase involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:55,513,874...55,681,544
Ensembl chr15:55,514,254...55,681,504
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:52,954,674...52,968,371
Ensembl chr12:52,954,669...52,974,741
JBrowse link
positive regulation of telomere capping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD39 ankyrin repeat domain 39 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:56,762,366...56,774,253
Ensembl chr 3:56,762,424...56,782,654
JBrowse link
G