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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of nucleobase-containing compound metabolic process
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Accession:GO:0045935 term browser browse the term
Definition:Any cellular process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids.
Synonyms:exact_synonym: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism;   up regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;   upregulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
 narrow_synonym: activation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;   stimulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
 related_synonym: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process


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3'-UTR-mediated mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPEB3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chr28:6,523,894...6,724,010
Ensembl chr28:6,529,212...6,723,454
JBrowse link
G DHX36 DEAH-box helicase 36 involved_in ISO (PMID:26489465) UniProt PMID:26489465 NCBI chr23:48,404,351...48,456,360
Ensembl chr23:48,407,316...48,456,654
JBrowse link
G DND1 DND microRNA-mediated repression inhibitor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:35,825,154...35,827,913
Ensembl chr 2:35,825,636...35,827,840
JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:20805360 RGD:10042974 NCBI chr32:6,323,444...6,341,238
Ensembl chr32:6,323,469...6,341,166
JBrowse link
G KHSRP KH-type splicing regulatory protein involved_in ISO (PMID:16126846)
(PMID:28275056)
UniProt
CACAO
PMID:16126846 PMID:28275056 NCBI chr20:53,746,656...53,755,388
Ensembl chr20:53,745,742...53,756,870
JBrowse link
G MOV10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:24726324) UniProt PMID:24726324 NCBI chr17:62,872,607...62,896,208
Ensembl chr17:62,872,756...62,896,395
JBrowse link
G PLEKHN1 pleckstrin homology domain containing N1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:56,193,824...56,202,340
Ensembl chr 5:56,194,583...56,202,293
JBrowse link
G QKI QKI, KH domain containing RNA binding acts_upstream_of_or_within ISO (MGI:5316962|PMID:20631256) MGI PMID:20631256 MGI:5316962 NCBI chr 1:51,800,294...51,956,891
Ensembl chr 1:51,800,309...51,952,714
JBrowse link
G RBM24 RNA binding motif protein 24 involved_in ISO (PMID:24375645) UniProt PMID:24375645 NCBI chr35:16,255,076...16,294,967 JBrowse link
G RC3H1 ring finger and CCCH-type domains 1 involved_in ISO (MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671) UniProt PMID:26000482 PMID:26255671 MGI:5706859 MGI:5751631 NCBI chr 7:25,265,836...25,312,417
Ensembl chr 7:25,233,235...25,305,174
JBrowse link
G TARDBP TAR DNA binding protein involved_in ISO (PMID:28335005) CACAO PMID:28335005 NCBI chr 2:84,987,752...84,998,136
Ensembl chr 2:84,989,952...84,998,593
JBrowse link
G TRIM71 tripartite motif containing 71 involved_in ISO (PMID:23125361) CACAO PMID:23125361 NCBI chr23:3,888,287...3,959,910
Ensembl chr23:3,893,647...3,960,411
JBrowse link
G UPF1 UPF1 RNA helicase and ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:44,234,411...44,271,129
Ensembl chr20:44,236,264...44,270,916
JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:4,972,369...4,984,218
Ensembl chr15:4,972,956...4,980,371
JBrowse link
G ZC3H12D zinc finger CCCH-type containing 12D involved_in ISO (MGI:5707103|PMID:26134560) UniProt PMID:26134560 MGI:5707103 NCBI chr 1:40,249,856...40,279,344
Ensembl chr 1:40,259,705...40,279,888
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in ISO (MGI:5795824|PMID:17288565)
(MGI:5784976|PMID:22701344), (MGI:5788345|PMID:27193233)
(PMID:14679154), (PMID:15187101), (PMID:15634918), (PMID:15766526)
(PMID:11719186), (PMID:15687258), (PMID:20221403), (PMID:27193233), (PMID:9703499)
UniProt PMID:9703499 PMID:11719186 PMID:14679154 PMID:15187101 PMID:15634918 PMID:15687258 PMID:15766526 PMID:17288565 PMID:20221403 PMID:22701344 PMID:27193233 MGI:5784976 MGI:5788345 MGI:5795824 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:42,663,287...42,668,665
Ensembl chr 8:42,664,223...42,668,514
JBrowse link
G ZFP36L2 ZFP36 ring finger protein like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:45,746,952...45,751,268
Ensembl chr10:45,748,936...45,751,250
JBrowse link
chromatin-mediated maintenance of transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDCA4 cell division cycle associated 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:72,457,671...72,465,630
Ensembl chr 8:72,458,160...72,465,767
JBrowse link
G CHEK1 checkpoint kinase 1 involved_in ISO (MGI:5294291|PMID:18243098) UniProt PMID:18243098 MGI:5294291 NCBI chr 5:8,878,511...8,910,626
Ensembl chr 5:8,879,147...8,907,669
JBrowse link
G NR3C1 nuclear receptor subfamily 3 group C member 1 involved_in ISO PMID:12917342 UniProt PMID:12917342 RGD:8553888 NCBI chr 2:38,124,568...38,242,510
Ensembl chr 2:38,123,190...38,240,755
JBrowse link
G PABPC1L poly(A) binding protein cytoplasmic 1 like acts_upstream_of_or_within ISO (MGI:5688228|PMID:26134869) MGI PMID:26134869 MGI:5688228 NCBI chr24:32,327,479...32,348,964
Ensembl chr24:32,327,494...32,349,071
JBrowse link
G PADI2 peptidyl arginine deiminase 2 involved_in ISO (PMID:22853951) UniProt PMID:22853951 NCBI chr 2:81,116,031...81,147,889
Ensembl chr 2:81,116,140...81,145,043
JBrowse link
G SERTAD1 SERTA domain containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:113,270,199...113,273,112
Ensembl chr 1:113,272,051...113,272,764
JBrowse link
G SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 involved_in ISO (PMID:12917342) UniProt PMID:12917342 NCBI chr27:4,624,962...4,640,229
Ensembl chr27:4,626,056...4,637,907
JBrowse link
G ZMIZ1 zinc finger MIZ-type containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:28,807,368...29,035,946
Ensembl chr 4:28,854,908...29,045,986
JBrowse link
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807625|PMID:18625844) Ensembl
MGI
PMID:18625844 GO_REF:0000107 MGI:3807625 NCBI chr16:40,554,214...40,571,841
Ensembl chr16:40,555,565...40,571,720
JBrowse link
G DCP1A decapping mRNA 1A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:36,597,457...36,661,362
Ensembl chr20:36,597,178...36,657,756
JBrowse link
G DCP1B decapping mRNA 1B involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:43,987,778...44,041,661
Ensembl chr27:43,844,529...44,041,637
JBrowse link
G DCP2 decapping mRNA 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:35,256,772...35,298,974
Ensembl chr 4:35,256,970...35,299,021
JBrowse link
G LSM1 LSM1 homolog, mRNA degradation associated involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:27,304,257...27,315,389
Ensembl chr16:27,304,198...27,315,233
JBrowse link
G NOCT nocturnin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807625|PMID:18625844) Ensembl
MGI
PMID:18625844 GO_REF:0000107 MGI:3807625 NCBI chr19:3,587,769...3,612,184
Ensembl chr19:3,588,695...3,609,307
JBrowse link
G PAN3 poly(A) specific ribonuclease subunit PAN3 acts_upstream_of_or_within ISO (MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:3807625 NCBI chr25:11,416,321...11,550,830
Ensembl chr25:11,417,657...11,550,810
JBrowse link
G PATL1 PAT1 homolog 1, processing body mRNA decay factor involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:37,109,288...37,138,756
Ensembl chr18:37,109,410...37,137,156
JBrowse link
exonucleolytic catabolism of deadenylated mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT6 CCR4-NOT transcription complex subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:1,209,732...1,277,435
Ensembl chr11:1,212,546...1,270,997
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:40,554,214...40,571,841
Ensembl chr16:40,555,565...40,571,720
JBrowse link
G CNOT8 CCR4-NOT transcription complex subunit 8 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:54,935,476...54,956,000
Ensembl chr 4:54,938,961...54,954,416
JBrowse link
G EXOSC3 exosome component 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:54,072,993...54,079,024
Ensembl chr11:54,073,313...54,078,598
JBrowse link
G EXOSC5 exosome component 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:112,599,519...112,609,039
Ensembl chr 1:112,599,568...112,608,941
JBrowse link
G EXOSC7 exosome component 7 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:43,343,573...43,379,614
Ensembl chr20:43,343,573...43,379,574
JBrowse link
G EXOSC8 exosome component 8 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:3,698,399...3,708,342
Ensembl chr25:3,698,483...3,769,683
JBrowse link
G EXOSC9 exosome component 9 involved_in ISO (PMID:11782436) UniProt PMID:11782436 NCBI chr19:18,324,117...18,336,628
Ensembl chr19:18,324,119...18,336,602
JBrowse link
mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELF1 CUGBP Elav-like family member 1 involved_in ISO PMID:30508596 ARUK-UCL PMID:30508596 RGD:38501076 NCBI chr18:42,105,316...42,199,017
Ensembl chr18:42,105,324...42,179,161
JBrowse link
G CNOT6L CCR4-NOT transcription complex subunit 6 like acts_upstream_of_or_within ISO (MGI:3828348|PMID:17452450) MGI PMID:17452450 MGI:3828348 NCBI chr32:2,192,800...2,305,526
Ensembl chr32:2,145,813...2,306,229
JBrowse link
G FTO FTO alpha-ketoglutarate dependent dioxygenase involved_in ISO (PMID:28002401), (PMID:30197295) UniProt PMID:28002401 PMID:30197295 NCBI chr 2:61,699,864...62,080,199
Ensembl chr 2:61,652,236...62,080,059
JBrowse link
G GIGYF2 GRB10 interacting GYF protein 2 involved_in ISO (PMID:27157137) ParkinsonsUK-UCL PMID:27157137 NCBI chr25:44,317,540...44,453,761
Ensembl chr25:44,317,517...44,452,064
JBrowse link
G HNRNPR heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:15798208 RGD:9854643 NCBI chr 2:76,073,553...76,108,763
Ensembl chr 2:76,077,022...76,105,433
JBrowse link
G METTL14 methyltransferase 14, N6-adenosine-methyltransferase subunit involved_in ISO (MGI:5559905|PMID:24394384), (MGI:5927282|PMID:28965759) UniProt PMID:24394384 PMID:28965759 MGI:5559905 MGI:5927282 NCBI chr32:37,653,163...37,679,577
Ensembl chr32:37,653,035...37,678,398
JBrowse link
G METTL16 methyltransferase 16, N6-methyladenosine involved_in ISO (MGI:6114846|PMID:29262316) UniProt PMID:29262316 MGI:6114846 NCBI chr 9:46,491,503...46,566,752
Ensembl chr 9:46,496,963...46,558,313
JBrowse link
G METTL3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (MGI:5559905|PMID:24394384), (MGI:5621227|PMID:25569111), (MGI:5621254|PMID:25456834), (MGI:5927282|PMID:28965759), (MGI:6094929|PMID:28792938), (MGI:6095345|PMID:28637692) UniProt PMID:24394384 PMID:25456834 PMID:25569111 PMID:28637692 PMID:28792938 PMID:28965759 MGI:5559905 MGI:5621227 MGI:5621254 MGI:5927282 MGI:6094929 MGI:6095345 NCBI chr15:18,528,755...18,546,303
Ensembl chr15:18,528,772...18,546,531
JBrowse link
G PUM1 pumilio RNA binding family member 1 involved_in ISO (MGI:5640888|PMID:25768905) UniProt PMID:25768905 MGI:5640888 NCBI chr 2:69,907,655...70,044,055
Ensembl chr 2:69,907,735...70,042,680
JBrowse link
G RBM24 RNA binding motif protein 24 involved_in ISO (PMID:29104163) UniProt PMID:29104163 NCBI chr35:16,255,076...16,294,967 JBrowse link
G RIDA reactive intermediate imine deaminase A homolog involved_in ISO (PMID:30930054) UniProt PMID:30930054 NCBI chr13:348,744...361,063
Ensembl chr13:348,860...361,522
JBrowse link
G ROCK1 Rho associated coiled-coil containing protein kinase 1 involved_in ISO (MGI:6271078|PMID:29353861) ARUK-UCL PMID:29353861 MGI:6271078 NCBI chr 7:66,862,614...67,001,538
Ensembl chr 7:66,862,608...67,142,853
JBrowse link
G ROCK2 Rho associated coiled-coil containing protein kinase 2 involved_in ISO (MGI:6271078|PMID:29353861) ARUK-UCL PMID:29353861 MGI:6271078 NCBI chr17:7,931,786...8,012,484
Ensembl chr17:7,934,739...8,178,707
JBrowse link
G YTHDF1 YTH N6-methyladenosine RNA binding protein 1 involved_in ISO (PMID:32492408)
(MGI:6490006|PMID:32943573)
UniProt PMID:32492408 PMID:32943573 MGI:6490006 NCBI chr24:46,927,218...46,940,015
Ensembl chr24:46,927,848...46,951,949
JBrowse link
G YTHDF2 YTH N6-methyladenosine RNA binding protein 2 involved_in ISO (PMID:27558897), (PMID:30559377), (PMID:30930054), (PMID:32492408)
(PMID:28106072), (PMID:32169943)
(MGI:6316439|PMID:29855337), (MGI:6316688|PMID:30065315), (MGI:6317061|PMID:30150673), (MGI:6490006|PMID:32943573), (MGI:6508516|PMID:31959747)
UniProt PMID:27558897 PMID:28106072 PMID:29855337 PMID:30065315 PMID:30150673 PMID:30559377 PMID:30930054 PMID:31959747 PMID:32169943 PMID:32492408 PMID:32943573 MGI:6316439 MGI:6316688 MGI:6317061 MGI:6490006 MGI:6508516 NCBI chr 2:71,760,232...71,791,420
Ensembl chr 2:71,760,312...71,792,527
JBrowse link
G YTHDF3 YTH N6-methyladenosine RNA binding protein 3 involved_in ISO (PMID:32492408)
(MGI:6490006|PMID:32943573)
(PMID:28106072)
UniProt PMID:28106072 PMID:32492408 PMID:32943573 MGI:6490006 NCBI chr29:13,239,900...13,280,035
Ensembl chr29:13,239,966...13,277,051
JBrowse link
negative regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G METTL16 methyltransferase 16, N6-methyladenosine involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:46,491,503...46,566,752
Ensembl chr 9:46,496,963...46,558,313
JBrowse link
negative regulation of chromatin silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATAD2 ATPase family AAA domain containing 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:21,667,214...21,733,028
Ensembl chr13:21,667,221...21,732,939
JBrowse link
G H1-2 H1.2 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,009,304...24,011,602 JBrowse link
G H1-4 H1.4 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,091,950...24,092,694 JBrowse link
G H1-6 H1.6 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,046,374...24,065,892
Ensembl chr35:24,044,188...24,047,810
JBrowse link
negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:32354837) UniProt PMID:32354837 NCBI chr26:24,355,326...24,403,306
Ensembl chr26:24,355,826...24,402,827
JBrowse link
negative regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TENT4A terminal nucleotidyltransferase 4A involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chr34:7,021,743...7,063,049
Ensembl chr34:7,020,187...7,063,129
JBrowse link
G TENT4B terminal nucleotidyltransferase 4B involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chr 2:65,068,088...65,147,853
Ensembl chr 2:65,071,111...65,147,896
JBrowse link
G TOB1 transducer of ERBB2, 1 involved_in ISO (PMID:18377426) UniProt PMID:18377426 NCBI chr 9:26,736,805...26,741,119
Ensembl chr 9:26,736,675...26,740,177
Ensembl chr 9:26,736,675...26,740,177
JBrowse link
nuclear polyadenylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOSC7 exosome component 7 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:43,343,573...43,379,614
Ensembl chr20:43,343,573...43,379,574
JBrowse link
G EXOSC8 exosome component 8 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:3,698,399...3,708,342
Ensembl chr25:3,698,483...3,769,683
JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:16934922) UniProt PMID:16934922 NCBI chr10:56,478,771...56,520,992
Ensembl chr10:56,478,680...56,520,967
JBrowse link
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT6L CCR4-NOT transcription complex subunit 6 like acts_upstream_of_or_within ISO (MGI:3828348|PMID:17452450) MGI PMID:17452450 MGI:3828348 NCBI chr32:2,192,800...2,305,526
Ensembl chr32:2,145,813...2,306,229
JBrowse link
G PDE12 phosphodiesterase 12 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:32,884,819...32,890,995
Ensembl chr20:32,886,972...32,890,890
JBrowse link
G POLR2D RNA polymerase II subunit D involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:22,754,118...22,774,054
Ensembl chr19:22,754,141...22,774,231
JBrowse link
G RC3H1 ring finger and CCCH-type domains 1 involved_in ISO (MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671) UniProt PMID:26000482 PMID:26255671 MGI:5706859 MGI:5751631 NCBI chr 7:25,265,836...25,312,417
Ensembl chr 7:25,233,235...25,305,174
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in
acts_upstream_of_or_within
ISO (PMID:23644599)
(MGI:3589099|PMID:15814898)
UniProt
MGI
PMID:15814898 PMID:23644599 MGI:3589099 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3589099|PMID:15814898) Ensembl
MGI
PMID:15814898 GO_REF:0000107 MGI:3589099 NCBI chr 8:42,663,287...42,668,665
Ensembl chr 8:42,664,223...42,668,514
JBrowse link
G ZFP36L2 ZFP36 ring finger protein like 2 acts_upstream_of_or_within ISO (MGI:3589099|PMID:15814898) MGI PMID:15814898 MGI:3589099 NCBI chr10:45,746,952...45,751,268
Ensembl chr10:45,748,936...45,751,250
JBrowse link
nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT3 CCR4-NOT transcription complex subunit 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:103,057,392...103,070,612
Ensembl chr 1:103,057,542...103,066,887
JBrowse link
G CNOT6 CCR4-NOT transcription complex subunit 6 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:1,209,732...1,277,435
Ensembl chr11:1,212,546...1,270,997
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807625|PMID:18625844) Ensembl
MGI
PMID:18625844 GO_REF:0000107 MGI:3807625 NCBI chr16:40,554,214...40,571,841
Ensembl chr16:40,555,565...40,571,720
JBrowse link
G MLH1 mutL homolog 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1934053|PMID:11337385) Ensembl
MGI
PMID:11337385 GO_REF:0000107 MGI:1934053 NCBI chr23:6,889,108...6,938,117
Ensembl chr23:6,889,135...6,938,116
JBrowse link
G PAN3 poly(A) specific ribonuclease subunit PAN3 involved_in IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr25:11,416,321...11,550,830
Ensembl chr25:11,417,657...11,550,810
JBrowse link
G PARN poly(A)-specific ribonuclease acts_upstream_of_or_within ISO (MGI:3785219|PMID:18337750) MGI PMID:18337750 MGI:3785219 NCBI chr 6:28,629,137...28,783,671
Ensembl chr 6:28,629,174...28,783,901
JBrowse link
G PNLDC1 PARN like ribonuclease domain containing exonuclease 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:49,045,153...49,063,008
Ensembl chr 1:49,044,979...49,062,802
JBrowse link
G SAMD4B sterile alpha motif domain containing 4B involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:113,828,432...113,857,336
Ensembl chr 1:113,828,447...113,857,314
JBrowse link
G ZFP36 ZFP36 ring finger protein acts_upstream_of_or_within
involved_in
ISO (MGI:3589099|PMID:15814898)
(PMID:23644599)
MGI
BHF-UCL
PMID:15814898 PMID:23644599 MGI:3589099 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065
JBrowse link
polyuridylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DIS3L2 DIS3 like 3'-5' exoribonuclease 2 involved_in IEA UniProt GO_REF:0000104 NCBI chr25:43,754,382...44,099,497
Ensembl chr25:43,754,484...44,095,381
JBrowse link
G TUT4 terminal uridylyl transferase 4 involved_in ISO (MGI:6162305|PMID:28792939) UniProt PMID:28792939 MGI:6162305 NCBI chr15:8,832,208...8,958,136
Ensembl chr15:8,832,199...9,047,152
JBrowse link
G TUT7 terminal uridylyl transferase 7 involved_in ISO (MGI:6162305|PMID:28792939) UniProt PMID:28792939 MGI:6162305 NCBI chr 1:73,400,648...73,464,935
Ensembl chr 1:73,401,421...73,475,493
JBrowse link
positive regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAX BCL2 associated X, apoptosis regulator involved_in ISO (PMID:11350920) BHF-UCL PMID:11350920 NCBI chr 1:107,423,388...107,426,464
Ensembl chr 1:107,422,424...107,426,464
JBrowse link
G ENDOG endonuclease G ISO RGD PMID:16407272 RGD:9685355 NCBI chr 9:54,809,470...54,812,795
Ensembl chr 9:54,809,530...54,813,042
JBrowse link
G HSF1 heat shock transcription factor 1 ISO RGD PMID:21192280 RGD:10403035 NCBI chr13:37,724,741...37,745,259
Ensembl chr13:37,724,759...37,745,252
JBrowse link
G IGFBP3 insulin like growth factor binding protein 3 ISO RGD PMID:15125883 RGD:10402776 NCBI chr16:1,021,855...1,027,604
Ensembl chr16:1,021,972...1,026,392
JBrowse link
G IL6 interleukin 6 involved_in ISO (PMID:28433754) ARUK-UCL PMID:28433754 NCBI chr14:36,474,268...36,478,519
Ensembl chr14:36,473,394...36,478,519
JBrowse link
positive regulation of ATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2L1 BCL2 like 1 involved_in ISO PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr24:21,145,214...21,209,425
Ensembl chr24:21,145,215...21,196,355
JBrowse link
G ENO1 enolase 1 involved_in ISO (PMID:15459207) CAFA PMID:15459207 NCBI chr 5:62,300,805...62,314,508
Ensembl chr 5:62,300,808...62,304,093
JBrowse link
G IL4 interleukin 4 involved_in ISO (MGI:6304699|PMID:29061364) ARUK-UCL PMID:29061364 MGI:6304699 NCBI chr11:20,972,693...20,981,539
Ensembl chr11:20,972,690...20,981,534
JBrowse link
G LOC100683370 thymosin beta-4 involved_in ISO (PMID:21106936) CAFA PMID:21106936 NCBI chr 1:21,127,694...21,128,346 JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 involved_in ISO PMID:15459207 CAFA PMID:15459207 RGD:12793039 NCBI chr30:30,683,192...30,760,479
Ensembl chr30:30,683,107...30,760,479
JBrowse link
G MT-CO2 mitochondrially encoded cytochrome c oxidase II ISO RGD PMID:19306371 RGD:13506652 NCBI chr MT:7,034...7,717
Ensembl chr MT:7,034...7,717
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor ISO RGD PMID:22629444 RGD:7240532 NCBI chr13:25,200,772...25,205,309
Ensembl chr13:25,200,577...25,205,309
JBrowse link
G NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 ISO RGD PMID:26888427 RGD:11040458 NCBI chr21:20,748,452...20,758,236 JBrowse link
G PID1 phosphotyrosine interaction domain containing 1 involved_in ISO (MGI:5306739|PMID:21080215) BHF-UCL PMID:21080215 MGI:5306739 NCBI chr25:41,424,307...41,649,736
Ensembl chr25:41,425,811...41,652,672
JBrowse link
G PPARA peroxisome proliferator activated receptor alpha acts_upstream_of ISO (PMID:31574452) ARUK-UCL PMID:31574452 NCBI chr10:19,934,020...20,006,096
Ensembl chr10:19,934,165...20,006,146
JBrowse link
G PPARGC1A PPARG coactivator 1 alpha involved_in ISS UniProt GO_REF:0000024 NCBI chr 3:85,645,942...86,284,570
Ensembl chr 3:86,016,140...86,281,269
JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase ISO RGD PMID:24096089 RGD:10413842 NCBI chr 1:49,886,887...51,201,930
Ensembl chr 1:49,889,005...51,201,764
JBrowse link
G SIRT1 sirtuin 1 involved_in ISO (PMID:24747689) AgBase PMID:24747689 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
G SLC25A12 solute carrier family 25 member 12 ISO RGD PMID:19764902 RGD:13628741 NCBI chr36:16,185,011...16,391,080
Ensembl chr36:16,185,649...16,483,016
JBrowse link
G STAT3 signal transducer and activator of transcription 3 ISO RGD PMID:23590160 RGD:8694322 NCBI chr 9:20,539,660...20,614,631
Ensembl chr 9:20,539,697...20,612,672
JBrowse link
G TAFAZZIN tafazzin, phospholipid-lysophospholipid transacylase ISO RGD PMID:20348225 RGD:13432160 NCBI chr  X:122,111,608...122,125,714
Ensembl chr  X:122,111,434...122,125,506
JBrowse link
G VCP valosin containing protein involved_in ISO (PMID:23498975) ParkinsonsUK-UCL PMID:23498975 NCBI chr11:51,636,986...51,651,749
Ensembl chr11:51,637,411...51,651,714
JBrowse link
positive regulation of base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAM168A family with sequence similarity 168 member A involved_in ISO (PMID:25260657) UniProt PMID:25260657 NCBI chr21:24,644,700...24,832,307
Ensembl chr21:24,768,108...24,827,784
JBrowse link
G RPS3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:23,180,515...23,187,034
Ensembl chr21:23,180,515...23,187,034
JBrowse link
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZFP36 ZFP36 ring finger protein involved_in ISO (PMID:16364915) UniProt PMID:16364915 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065
JBrowse link
positive regulation of deoxyribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCNA proliferating cell nuclear antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:16,478,774...16,485,992
Ensembl chr24:16,478,769...16,484,992
JBrowse link
positive regulation of DNA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARRB2 arrestin beta 2 ISO RGD PMID:19254952 RGD:5509898 NCBI chr 5:31,831,208...31,838,875
Ensembl chr 5:31,829,864...31,839,454
JBrowse link
G C3AR1 complement C3a receptor 1 ISO RGD PMID:23713944 RGD:7411623 NCBI chr27:37,431,745...37,439,858
Ensembl chr27:37,433,792...37,435,246
JBrowse link
G CAMK2D calcium/calmodulin dependent protein kinase II delta ISO RGD PMID:17267544 RGD:2303063 NCBI chr32:33,223,093...33,525,783
Ensembl chr32:33,224,716...33,525,371
JBrowse link
G CRHR2 corticotropin releasing hormone receptor 2 ISO RGD PMID:16005543 RGD:5131269 NCBI chr14:43,366,849...43,414,398
Ensembl chr14:43,368,340...43,415,142
JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 ISO RGD PMID:20439821 RGD:7829726 NCBI chr17:30,273,281...30,278,554
Ensembl chr17:30,272,749...30,278,554
JBrowse link
G DDX39B DExD-box helicase 39B ISO RGD PMID:22446327 RGD:10401140 NCBI chr12:1,032,377...1,044,465
Ensembl chr12:1,032,368...1,044,492
JBrowse link
G FGF2 fibroblast growth factor 2 involved_in ISO (PMID:16774925) UniProt PMID:16774925 NCBI chr19:17,403,288...17,463,143
Ensembl chr19:16,994,661...17,463,151
JBrowse link
G FGFR4 fibroblast growth factor receptor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:36,243,689...36,254,636
Ensembl chr 4:36,244,220...36,252,035
JBrowse link
G GFER growth factor, augmenter of liver regeneration ISO RGD PMID:16937468 RGD:9685728 NCBI chr 6:38,948,927...38,951,300
Ensembl chr 6:38,949,484...38,951,703
JBrowse link
G GSK3B glycogen synthase kinase 3 beta ISO RGD PMID:12721208 RGD:10045365 NCBI chr33:23,458,369...23,659,878
Ensembl chr33:23,463,767...23,659,666
JBrowse link
G HGF hepatocyte growth factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:21,329,688...21,410,257
Ensembl chr18:21,332,817...21,410,263
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor involved_in ISS UniProt GO_REF:0000024 NCBI chr13:25,200,772...25,205,309
Ensembl chr13:25,200,577...25,205,309
JBrowse link
G NOX4 NADPH oxidase 4 involved_in ISO (MGI:5009390|PMID:17942966) UniProt PMID:17942966 MGI:5009390 NCBI chr21:10,615,153...10,782,927
Ensembl chr21:10,615,970...10,775,277
JBrowse link
G PAK3 p21 (RAC1) activated kinase 3 ISO RGD PMID:12890786 RGD:7775030 NCBI chr  X:84,074,146...84,335,699
Ensembl chr  X:84,074,001...84,329,951
JBrowse link
G PDGFB platelet derived growth factor subunit B involved_in ISS UniProt GO_REF:0000024 NCBI chr10:25,798,877...25,819,422
Ensembl chr10:25,798,938...25,817,746
JBrowse link
G PDGFRB platelet derived growth factor receptor beta involved_in ISO (MGI:5284758|PMID:19019919) UniProt PMID:19019919 MGI:5284758 NCBI chr 4:58,925,922...58,963,639
Ensembl chr 4:58,926,351...58,962,283
JBrowse link
G PRKD2 protein kinase D2 involved_in ISO (MGI:5306299|PMID:17226786) UniProt PMID:17226786 MGI:5306299 NCBI chr 1:109,206,400...109,241,529
Ensembl chr 1:109,207,067...109,330,007
JBrowse link
G PTK2B protein tyrosine kinase 2 beta ISO RGD PMID:21451101 RGD:10041071 NCBI chr25:30,137,546...30,264,221
Ensembl chr25:30,138,209...30,264,133
JBrowse link
G RGCC regulator of cell cycle involved_in ISO PMID:9756947 BHF-UCL PMID:9756947 RGD:633887 NCBI chr22:9,199,204...9,209,297 JBrowse link
G SMOC2 SPARC related modular calcium binding 2 involved_in ISO (PMID:16774925) UniProt PMID:16774925 NCBI chr 1:55,826,354...55,986,053
Ensembl chr 1:55,825,666...55,986,052
JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase involved_in ISO PMID:16530387 UniProt PMID:16530387 RGD:8553998 NCBI chr24:25,982,499...26,019,748
Ensembl chr24:25,999,048...26,018,077
JBrowse link
G TNF tumor necrosis factor ISO RGD PMID:9395232 RGD:14696805 NCBI chr12:1,074,561...1,076,425
Ensembl chr12:1,074,552...1,076,425
JBrowse link
G VEGFA vascular endothelial growth factor A involved_in ISO (PMID:16774925) UniProt PMID:16774925 NCBI chr12:12,209,032...12,224,978
Ensembl chr12:12,208,231...12,224,965
JBrowse link
positive regulation of DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATM ATM serine/threonine kinase ISO RGD PMID:27895165 RGD:12879393 NCBI chr 5:24,180,129...24,297,207
Ensembl chr 5:24,182,135...24,297,207
JBrowse link
positive regulation of DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTUD4 OTU deubiquitinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:43,816,656...43,861,813
Ensembl chr15:43,818,196...43,861,784
JBrowse link
G STPG4 sperm-tail PG-rich repeat containing 4 involved_in ISO (MGI:5762940|PMID:23560077) UniProt PMID:23560077 MGI:5762940 NCBI chr10:49,255,715...49,294,752
Ensembl chr10:49,255,723...49,294,708
JBrowse link
G TOX thymocyte selection associated high mobility group box involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:9,542,471...9,841,759
Ensembl chr29:9,544,561...9,842,034
JBrowse link
G USP7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:33,277,328...33,315,601
Ensembl chr 6:33,277,444...33,314,491
JBrowse link
G USP9X ubiquitin specific peptidase 9 X-linked involved_in ISO (PMID:25944111) UniProt PMID:25944111 NCBI chr  X:35,522,873...35,676,086 JBrowse link
positive regulation of DNA ligase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB1 high mobility group box 1 involved_in ISO (PMID:9600082) CACAO PMID:9600082 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G XRCC1 X-ray repair cross complementing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:111,548,719...111,571,816
Ensembl chr 1:111,548,719...111,571,816
JBrowse link
positive regulation of DNA ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APLF aprataxin and PNKP like factor acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21211721) MGI
Ensembl
PMID:21211721 GO_REF:0000107 NCBI chr10:67,454,500...67,522,659
Ensembl chr10:67,454,356...67,521,761
JBrowse link
G HMGB1 high mobility group box 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 acts_upstream_of_or_within ISO (PMID:21211721) MGI PMID:21211721 NCBI chr20:37,767,336...37,774,269
Ensembl chr20:37,767,505...37,773,770
JBrowse link
G RAD51 RAD51 recombinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:7,842,540...7,877,128
Ensembl chr30:7,842,540...7,877,606
JBrowse link
positive regulation of DNA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA3 annexin A3 ISO RGD PMID:15744063 RGD:2316072 NCBI chr32:3,006,000...3,049,321
Ensembl chr32:3,005,788...3,049,049
JBrowse link
G HMGB2 high mobility group box 2 ISO RGD PMID:8432381 RGD:2316096 NCBI chr25:23,939,024...23,941,720
Ensembl chr25:23,939,027...23,941,606
JBrowse link
G IGF1R insulin like growth factor 1 receptor ISO RGD PMID:19507001 RGD:2311507 NCBI chr 3:41,795,337...42,096,255
Ensembl chr 3:41,794,623...42,090,387
JBrowse link
G NPM1 nucleophosmin 1 ISO RGD PMID:11481036 RGD:1600909 NCBI chr 4:40,756,464...40,770,174
Ensembl chr 4:40,756,465...40,770,175
JBrowse link
G NPM2 nucleophosmin/nucleoplasmin 2 ISO lesser effect than Npm1 RGD PMID:11481036 RGD:1600909 NCBI chr25:35,204,905...35,226,226 JBrowse link
G OGA O-GlcNAcase ISO RGD PMID:19139380 RGD:2305938 NCBI chr28:14,376,824...14,405,409
Ensembl chr28:14,373,452...14,404,541
JBrowse link
G PFN1 profilin 1 ISO RGD PMID:10966486 RGD:2324858 NCBI chr 5:31,670,483...31,671,891
Ensembl chr 5:31,670,194...31,671,895
JBrowse link
positive regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT3L DNA methyltransferase 3 like involved_in ISO (MGI:5553039|PMID:24074865) UniProt PMID:24074865 MGI:5553039 NCBI chr31:38,099,100...38,111,432 JBrowse link
G MECP2 methyl-CpG binding protein 2 involved_in ISO (PMID:23960241) BHF-UCL PMID:23960241 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor involved_in ISO (PMID:19786833) BHF-UCL PMID:19786833 NCBI chr13:25,200,772...25,205,309
Ensembl chr13:25,200,577...25,205,309
JBrowse link
G WT1 WT1 transcription factor acts_upstream_of ISO (PMID:23042785) ARUK-UCL PMID:23042785 NCBI chr18:35,099,660...35,148,767
Ensembl chr18:35,103,934...35,148,000
JBrowse link
positive regulation of DNA primase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRIM2 DNA primase subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:24,504,202...24,811,942
Ensembl chr12:24,504,700...24,811,924
JBrowse link
positive regulation of DNA recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZCWPW1 zinc finger CW-type and PWWP domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:9,239,626...9,314,972
Ensembl chr 6:9,246,264...9,271,330
JBrowse link
positive regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr32:7,298,789...7,316,665
Ensembl chr32:7,298,790...7,317,001
JBrowse link
G APBB1 amyloid beta precursor protein binding family B member 1 involved_in ISO PMID:19282473
(MGI:3698695|PMID:17121854)
UniProt PMID:17121854 PMID:19282473 MGI:3698695 RGD:8553580 NCBI chr21:29,719,386...29,741,658
Ensembl chr21:29,719,589...29,759,046
JBrowse link
G BABAM1 BRISC and BRCA1 A complex member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:45,466,808...45,474,953
Ensembl chr20:45,466,805...45,473,009
JBrowse link
G BABAM2 BRISC and BRCA1 A complex member 2 involved_in IEA UniProt GO_REF:0000104 NCBI chr17:21,886,127...22,288,513
Ensembl chr17:21,889,862...22,288,504
JBrowse link
G BRCA1 BRCA1 DNA repair associated involved_in ISO (PMID:17525340), (PMID:17643121), (PMID:19261748) UniProt PMID:17525340 PMID:17643121 PMID:19261748 NCBI chr 9:19,958,941...20,025,494
Ensembl chr 9:19,958,391...20,025,494
JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 involved_in ISO (PMID:17525341), (PMID:19261746), (PMID:19261748) UniProt PMID:17525341 PMID:19261746 PMID:19261748 NCBI chr  X:123,081,262...123,143,509
Ensembl chr  X:123,081,050...123,140,133
JBrowse link
G CBX8 chromobox 8 ISO RGD PMID:23572236 RGD:9586727 NCBI chr 9:1,839,701...1,842,355
Ensembl chr 9:1,839,096...1,843,099
JBrowse link
G CEBPG CCAAT enhancer binding protein gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:118,777,110...118,784,397
Ensembl chr 1:118,778,224...118,778,667
JBrowse link
G DHX9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:16,233,763...16,292,576
Ensembl chr 7:16,233,814...16,292,618
JBrowse link
G EGFR epidermal growth factor receptor involved_in ISO (PMID:17115032) UniProt PMID:17115032 NCBI chr18:5,983,669...6,044,092
Ensembl chr18:5,982,770...6,042,631
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor involved_in ISO (PMID:22483866) UniProt PMID:22483866 NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162
JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:47,502,777...47,559,012
Ensembl chr 2:47,503,762...47,558,889
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653
JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:72,313,412...72,417,729
Ensembl chr 2:72,328,362...72,414,058
JBrowse link
G FGF10 fibroblast growth factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase ISO RGD PMID:1945835 RGD:729332 NCBI chr28:38,204,611...38,427,482
Ensembl chr28:38,204,610...38,427,380
JBrowse link
G NPAS2 neuronal PAS domain protein 2 involved_in ISO (PMID:18819933) UniProt PMID:18819933 NCBI chr10:41,846,766...42,005,058
Ensembl chr10:41,847,625...42,005,469
JBrowse link
G PARG poly(ADP-ribose) glycohydrolase ISO RGD PMID:15158362 RGD:2316739 NCBI chr28:1,651,698...1,767,210
Ensembl chr28:1,652,670...1,766,895
JBrowse link
G PCNA proliferating cell nuclear antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:16,478,774...16,485,992
Ensembl chr24:16,478,769...16,484,992
JBrowse link
G RNF168 ring finger protein 168 involved_in ISO (PMID:19203578), (PMID:19203579)
(PMID:23760478)
UniProt PMID:19203578 PMID:19203579 PMID:23760478 NCBI chr33:29,542,209...29,575,127
Ensembl chr33:29,539,182...29,628,248
JBrowse link
G RNF8 ring finger protein 8 involved_in IEA UniProt GO_REF:0000104 NCBI chr12:6,380,365...6,415,407
Ensembl chr12:6,292,459...6,415,382
JBrowse link
G RPS3 ribosomal protein S3 involved_in ISO (PMID:23911537) UniProt PMID:23911537 NCBI chr21:23,180,515...23,187,034
Ensembl chr21:23,180,515...23,187,034
JBrowse link
G SIRT1 sirtuin 1 involved_in ISO (PMID:19934257) UniProt PMID:19934257 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in ISO (PMID:24790221) UniProt PMID:24790221 NCBI chr 7:69,359,286...69,505,067
Ensembl chr 7:69,358,447...69,621,067
JBrowse link
G TIGAR TP53 induced glycolysis regulatory phosphatase involved_in ISO (PMID:25928429) UniProt PMID:25928429 NCBI chr27:40,521,751...40,549,304
Ensembl chr27:40,523,314...40,549,332
JBrowse link
G TMEM161A transmembrane protein 161A involved_in ISO (PMID:16551573) BHF-UCL PMID:16551573 NCBI chr20:44,021,722...44,037,985
Ensembl chr20:44,020,919...44,037,938
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in ISO (PMID:17178852) UniProt PMID:17178852 NCBI chr 1:99,408,920...99,415,432
Ensembl chr 1:99,408,925...99,415,146
JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N involved_in ISO (PMID:16129784) HGNC-UCL PMID:16129784 NCBI chr10:41,470,073...41,470,738
Ensembl chr10:41,470,073...41,470,738
JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chr29:307,502...359,058
Ensembl chr29:307,525...357,962
JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:36,339,711...36,467,035
Ensembl chr 4:36,354,922...36,466,880
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in ISO (PMID:25512560) UniProt PMID:25512560 NCBI chr 5:32,574,153...32,586,222
Ensembl chr 5:32,574,134...32,594,333
JBrowse link
positive regulation of DNA strand elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POT1 protection of telomeres 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:10,987,385...11,067,473
Ensembl chr14:10,987,494...11,066,956
JBrowse link
positive regulation of DNA-dependent DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK2 cyclin dependent kinase 2 acts_upstream_of_or_within ISO (MGI:4439421|PMID:20215406) MGI PMID:20215406 MGI:4439421 NCBI chr10:300,863...306,546
Ensembl chr10:300,903...305,438
JBrowse link
G CIZ1 CDKN1A interacting zinc finger protein 1 acts_upstream_of_or_within ISO (MGI:3513706|PMID:15585571)
(MGI:4439421|PMID:20215406)
MGI PMID:15585571 PMID:20215406 MGI:3513706 MGI:4439421 NCBI chr 9:55,303,189...55,322,429
Ensembl chr 9:55,303,129...55,318,945
JBrowse link
positive regulation of DNA-directed DNA polymerase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHTF18 chromosome transmission fidelity factor 18 involved_in ISO (PMID:12930902) UniProt PMID:12930902 NCBI chr 6:39,806,924...39,815,145
Ensembl chr 6:39,806,673...39,815,333
JBrowse link
G CHTF8 chromosome transmission fidelity factor 8 involved_in ISO (PMID:12930902) UniProt PMID:12930902 NCBI chr 5:80,510,617...80,521,356
Ensembl chr 5:80,509,002...80,520,233
JBrowse link
G DSCC1 DNA replication and sister chromatid cohesion 1 involved_in ISO (PMID:12930902) UniProt PMID:12930902 NCBI chr13:18,825,522...18,841,905
Ensembl chr13:18,825,844...18,841,873
JBrowse link
G NPM1 nucleophosmin 1 ISO RGD PMID:8123045 RGD:11535022 NCBI chr 4:40,756,464...40,770,174
Ensembl chr 4:40,756,465...40,770,175
JBrowse link
G PCNA proliferating cell nuclear antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:16,478,774...16,485,992
Ensembl chr24:16,478,769...16,484,992
JBrowse link
G POLG2 DNA polymerase gamma 2, accessory subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:12,258,188...12,298,376
Ensembl chr 9:12,269,990...12,298,272
JBrowse link
G RFC2 replication factor C subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:6,119,203...6,159,293
Ensembl chr 6:6,119,164...6,160,886
JBrowse link
G RFC3 replication factor C subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:6,469,865...6,486,935
Ensembl chr25:6,469,867...6,486,849
JBrowse link
G RFC4 replication factor C subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr34:19,361,024...19,377,289
Ensembl chr34:19,361,044...19,377,294
JBrowse link
G RFC5 replication factor C subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:14,428,661...14,439,641
Ensembl chr26:14,428,695...14,438,986
JBrowse link
positive regulation of DNA-templated transcription, elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALYREF Aly/REF export factor involved_in ISO (PMID:22144908) UniProt PMID:22144908 NCBI chr 9:398,207...402,787
Ensembl chr 9:399,072...402,721
JBrowse link
G CCNT2 cyclin T2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:37,743,442...37,787,875
Ensembl chr19:37,743,235...37,783,220
JBrowse link
G DDX39B DExD-box helicase 39B involved_in ISS UniProt GO_REF:0000024 NCBI chr12:1,032,377...1,044,465
Ensembl chr12:1,032,368...1,044,492
JBrowse link
G ELL3 elongation factor for RNA polymerase II 3 involved_in ISO (PMID:10882741) UniProt PMID:10882741 NCBI chr30:10,514,633...10,517,963
Ensembl chr30:10,515,045...10,517,880
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162
JBrowse link
G KAT7 lysine acetyltransferase 7 involved_in ISO (MGI:6392952|PMID:31827282) UniProt PMID:31827282 MGI:6392952 NCBI chr 9:25,841,916...25,875,245
Ensembl chr 9:25,842,054...25,873,674
JBrowse link
G SCAF8 SR-related CTD associated factor 8 involved_in ISO (PMID:31104839) UniProt PMID:31104839 NCBI chr 1:44,562,589...44,777,864
Ensembl chr 1:44,562,567...44,683,903
JBrowse link
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit involved_in ISO (PMID:9450929) UniProt PMID:9450929 NCBI chr 9:32,990,060...32,996,023
Ensembl chr 9:32,990,061...33,191,176
JBrowse link
G SUPT5H SPT5 homolog, DSIF elongation factor subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:113,759,419...113,788,490
Ensembl chr 1:113,759,423...113,788,447
JBrowse link
G THOC1 THO complex 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:67,082,100...67,136,592
Ensembl chr 7:67,082,231...67,136,525
JBrowse link
G THOC5 THO complex 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:22,748,857...22,785,288
Ensembl chr26:22,748,895...22,784,143
JBrowse link
positive regulation of DNA-templated transcription, initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCLAF1 BCL2 associated transcription factor 1 involved_in ISO (PMID:17938203) UniProt PMID:17938203 NCBI chr 1:28,852,654...28,882,095
Ensembl chr 1:28,855,041...28,882,006
JBrowse link
G CEBPA CCAAT enhancer binding protein alpha involved_in ISO (PMID:28186500) UniProt PMID:28186500 NCBI chr 1:118,846,252...118,851,045 JBrowse link
G FOSL1 FOS like 1, AP-1 transcription factor subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:51,366,719...51,374,411
Ensembl chr18:51,368,352...51,373,748
JBrowse link
G JUN Jun proto-oncogene, AP-1 transcription factor subunit involved_in ISO (PMID:23027619) CACAO PMID:23027619 NCBI chr 5:50,966,698...50,968,939 JBrowse link
G MITF melanocyte inducing transcription factor involved_in ISO (PMID:12204775), (PMID:8995290) CACAO PMID:8995290 PMID:12204775 NCBI chr20:21,772,147...21,873,545
Ensembl chr20:21,612,927...21,870,578
JBrowse link
G SETX senataxin involved_in ISO (PMID:21700224) UniProt PMID:21700224 NCBI chr 9:51,900,004...51,980,694
Ensembl chr 9:51,901,233...51,978,833
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17332325) CACAO PMID:17332325
positive regulation of DNA-templated transcription, termination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SETX senataxin involved_in ISO (PMID:19515850) UniProt PMID:19515850 NCBI chr 9:51,900,004...51,980,694
Ensembl chr 9:51,901,233...51,978,833
JBrowse link
positive regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX11 DEAD/H-box helicase 11 involved_in ISO (PMID:23797032) UniProt PMID:23797032 NCBI chr27:42,067,845...42,102,699
Ensembl chr27:42,067,898...42,105,870
JBrowse link
G FMN2 formin 2 involved_in ISO (PMID:26287480) UniProt PMID:26287480 NCBI chr 7:31,657,371...32,024,777
Ensembl chr 7:31,697,245...32,023,472
JBrowse link
G FOXM1 forkhead box M1 involved_in ISO (PMID:17101782)
(MGI:3698692|PMID:17101782)
UniProt PMID:17101782 MGI:3698692 NCBI chr27:41,894,605...41,905,656
Ensembl chr27:41,894,672...41,905,663
JBrowse link
G KHDC3L KH domain containing 3 like, subcortical maternal complex member involved_in ISO (MGI:6467697|PMID:29125140), (MGI:6716977|PMID:33115731) UniProt PMID:29125140 PMID:33115731 MGI:6467697 MGI:6716977 NCBI chr12:35,434,123...35,435,679
Ensembl chr12:35,434,123...35,468,943
JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase involved_in ISO (PMID:24147153) BHF-UCL PMID:24147153 NCBI chr28:38,204,611...38,427,482
Ensembl chr28:38,204,610...38,427,380
JBrowse link
G OOEP oocyte expressed protein involved_in ISS UniProt GO_REF:0000024 NCBI chr12:35,431,562...35,449,540
Ensembl chr12:35,448,015...35,449,511
JBrowse link
G SLF1 SMC5-SMC6 complex localization factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:14,792,851...14,877,024
Ensembl chr 3:14,793,363...14,869,755
JBrowse link
G SLF2 SMC5-SMC6 complex localization factor 2 involved_in ISO (PMID:25931565) UniProt PMID:25931565 NCBI chr28:13,595,194...13,656,644
Ensembl chr28:13,595,831...13,651,638
JBrowse link
G SPIDR scaffold protein involved in DNA repair involved_in ISO (PMID:23509288) UniProt PMID:23509288 NCBI chr35:79,188...503,687
Ensembl chr35:79,185...514,797
JBrowse link
G SPIRE1 spire type actin nucleation factor 1 involved_in ISO (PMID:26287480) UniProt PMID:26287480 NCBI chr 7:77,860,287...78,062,894
Ensembl chr 7:77,854,875...78,092,466
JBrowse link
G SPIRE2 spire type actin nucleation factor 2 involved_in ISO (PMID:26287480) UniProt PMID:26287480 NCBI chr 5:63,732,855...63,765,162
Ensembl chr 5:63,732,842...63,753,419
JBrowse link
G TIMELESS timeless circadian regulator involved_in ISO (PMID:23797032) UniProt PMID:23797032 NCBI chr10:671,829...701,152
Ensembl chr10:671,269...687,016
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in ISO (PMID:27715493) UniProt PMID:27715493 NCBI chr 5:32,574,153...32,586,222
Ensembl chr 5:32,574,134...32,594,333
JBrowse link
G ZCWPW1 zinc finger CW-type and PWWP domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:9,239,626...9,314,972
Ensembl chr 6:9,246,264...9,271,330
JBrowse link
positive regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR2 actin related protein 2 involved_in ISO (PMID:29925947) UniProt PMID:29925947 NCBI chr10:64,696,068...64,733,027
Ensembl chr10:64,696,111...64,730,553
JBrowse link
G ARID2 AT-rich interaction domain 2 involved_in ISO (PMID:28381560) CACAO PMID:28381560 NCBI chr27:8,411,092...8,579,735
Ensembl chr27:8,412,377...8,579,882
JBrowse link
G BLM BLM RecQ like helicase acts_upstream_of_or_within ISO (MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:5648586 NCBI chr 3:53,408,120...53,506,728
Ensembl chr 3:53,408,217...53,473,146
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162
JBrowse link
G FANCB FA complementation group B acts_upstream_of_or_within ISO (MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:5648586 NCBI chr  X:10,690,826...11,140,838
Ensembl chr  X:11,095,200...11,141,029
JBrowse link
G FUS FUS RNA binding protein involved_in ISO (PMID:10567410) UniProt PMID:10567410 NCBI chr 6:17,059,904...17,071,227
Ensembl chr 6:17,060,061...17,071,178
JBrowse link
G KHDC3L KH domain containing 3 like, subcortical maternal complex member involved_in ISO (PMID:31609975)
(MGI:6716962|PMID:25936915)
UniProt PMID:25936915 PMID:31609975 MGI:6716962 NCBI chr12:35,434,123...35,435,679
Ensembl chr12:35,434,123...35,468,943
JBrowse link
G MMS19 MMS19 homolog, cytosolic iron-sulfur assembly component involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:10,749,327...10,783,846
Ensembl chr28:10,749,325...10,783,805
JBrowse link
G MRNIP MRN complex interacting protein involved_in ISO (PMID:27568553) UniProt PMID:27568553 NCBI chr11:1,834,148...1,859,601
Ensembl chr11:1,833,967...1,859,347
JBrowse link
G OOEP oocyte expressed protein involved_in ISS UniProt GO_REF:0000024 NCBI chr12:35,431,562...35,449,540
Ensembl chr12:35,448,015...35,449,511
JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in ISO (PMID:26344098), (PMID:30356214) UniProt PMID:26344098 PMID:30356214 NCBI chr 7:38,503,072...38,542,556
Ensembl chr 7:38,503,067...38,542,127
JBrowse link
G RAD51AP1 RAD51 associated protein 1 involved_in ISO (PMID:17996710), (PMID:17996711) UniProt PMID:17996710 PMID:17996711 NCBI chr27:40,303,935...40,341,666
Ensembl chr27:40,303,992...40,341,526
JBrowse link
G TIMELESS timeless circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:671,829...701,152
Ensembl chr10:671,269...687,016
JBrowse link
G WAS WASP actin nucleation promoting factor involved_in ISO (PMID:29925947) UniProt PMID:29925947 NCBI chr  X:41,882,240...41,890,053
Ensembl chr  X:41,882,875...41,890,058
JBrowse link
G WDR48 WD repeat domain 48 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:8,716,598...8,766,242
Ensembl chr23:8,715,700...8,764,678
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in ISO (PMID:25512560) UniProt PMID:25512560 NCBI chr 5:32,574,153...32,586,222
Ensembl chr 5:32,574,134...32,594,333
JBrowse link
positive regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DTX3L deltex E3 ubiquitin ligase 3L involved_in IEA Ensembl GO_REF:0000107 NCBI chr33:25,676,686...25,684,270
Ensembl chr33:25,677,076...25,684,175
JBrowse link
G FH fumarate hydratase involved_in ISO (PMID:26237645) UniProt PMID:26237645 NCBI chr 7:32,900,250...32,927,436
Ensembl chr 7:32,901,586...32,927,412
JBrowse link
G KMT5B lysine methyltransferase 5B involved_in ISO (PMID:28114273) UniProt PMID:28114273 NCBI chr18:49,655,783...49,691,899
Ensembl chr18:49,637,610...49,827,034
JBrowse link
G KMT5C lysine methyltransferase 5C involved_in ISO (PMID:28114273) UniProt PMID:28114273 NCBI chr 1:102,334,687...102,342,090
Ensembl chr 1:102,333,543...102,342,118
JBrowse link
G LOC485121 lysine-specific demethylase 4D acts_upstream_of_or_within ISO (PMID:24550317) MGI PMID:24550317 NCBI chr21:6,002,292...6,037,344
Ensembl chr21:5,987,723...6,004,783
JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr 2:84,539,724...84,549,402
Ensembl chr 2:84,545,226...84,549,356
JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 involved_in ISO (PMID:24598253) UniProt PMID:24598253 NCBI chr20:37,767,336...37,774,269
Ensembl chr20:37,767,505...37,773,770
JBrowse link
G PARP9 poly(ADP-ribose) polymerase family member 9 involved_in ISO (PMID:28525742) UniProt PMID:28525742 NCBI chr33:25,643,439...25,676,979
Ensembl chr33:25,643,883...25,677,462
JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase involved_in ISO (PMID:12032095) CACAO PMID:12032095 NCBI chr 1:106,695,649...106,707,229
Ensembl chr 1:106,694,589...106,702,150
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit involved_in ISS UniProt GO_REF:0000024 NCBI chr29:24,904...243,926
Ensembl chr29:35,007...243,895
JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in ISO (PMID:28241136)
(MGI:5468037|PMID:23306437), (MGI:5476381|PMID:23333305)
UniProt
CACAO
PMID:23306437 PMID:23333305 PMID:28241136 MGI:5468037 MGI:5476381 NCBI chr19:52,661,278...52,711,969
Ensembl chr19:52,661,155...52,709,279
JBrowse link
G SETMAR SET domain without mariner transposase fusion involved_in ISO (PMID:20620605), (PMID:21491884) UniProt PMID:20620605 PMID:21491884 NCBI chr20:13,214,241...13,224,020
Ensembl chr20:13,214,241...13,224,020
JBrowse link
G SHLD1 shieldin complex subunit 1 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr24:15,957,863...16,037,336
Ensembl chr24:15,957,852...16,038,008
JBrowse link
G SHLD2 shieldin complex subunit 2 involved_in ISO (PMID:29656893), (PMID:29789392) UniProt PMID:29656893 PMID:29789392 NCBI chr 4:34,665,111...34,740,645
Ensembl chr 4:34,688,245...34,763,705
JBrowse link
G SHLD3 shieldin complex subunit 3 involved_in ISO (PMID:29656893) UniProt PMID:29656893
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in ISO (PMID:25294876) UniProt PMID:25294876 NCBI chr 7:69,359,286...69,505,067
Ensembl chr 7:69,358,447...69,621,067
JBrowse link
G TOP2B DNA topoisomerase II beta ISO RGD PMID:22019940 RGD:13432143 NCBI chr23:18,159,521...18,206,413
Ensembl chr23:18,146,095...18,206,287
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in ISO (PMID:25512560) UniProt PMID:25512560 NCBI chr 5:32,574,153...32,586,222
Ensembl chr 5:32,574,134...32,594,333
JBrowse link
positive regulation of endodeoxyribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 involved_in ISO (PMID:20605787) UniProt PMID:20605787 NCBI chr 8:72,317,399...72,335,686
Ensembl chr 8:72,317,869...72,335,193
JBrowse link
G DDX11 DEAD/H-box helicase 11 involved_in ISO (PMID:18499658) UniProt PMID:18499658 NCBI chr27:42,067,845...42,102,699
Ensembl chr27:42,067,898...42,105,870
JBrowse link
G PRKCD protein kinase C delta involved_in ISO (PMID:19059439) UniProt PMID:19059439 NCBI chr20:36,723,491...36,751,982
Ensembl chr20:36,723,809...36,752,191
JBrowse link
G RPS3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:23,180,515...23,187,034
Ensembl chr21:23,180,515...23,187,034
JBrowse link
positive regulation of endoribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSP70 heat shock protein 70 involved_in ISO (PMID:20625543) ParkinsonsUK-UCL PMID:20625543 NCBI chr12:1,285,282...1,287,670 JBrowse link
positive regulation of glycolytic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APP amyloid beta precursor protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr31:21,351,207...21,614,466
Ensembl chr31:21,351,207...21,614,337
JBrowse link
G ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) involved_in ISO (MGI:4881347|PMID:21074248) UniProt PMID:21074248 MGI:4881347 NCBI chr 8:47,193,463...47,245,865
Ensembl chr 8:47,196,439...47,229,964
JBrowse link
G ESRRB estrogen related receptor beta involved_in ISO PMID:24481529 BHF-UCL PMID:24481529 RGD:12910990 NCBI chr 8:49,253,877...49,424,148
Ensembl chr 8:49,253,332...49,421,332
JBrowse link
G GCK glucokinase ISO RGD PMID:17553851 RGD:2301905
G GPD1 glycerol-3-phosphate dehydrogenase 1 acts_upstream_of_or_within ISO (MGI:1927687|PMID:11147825) MGI PMID:11147825 MGI:1927687 NCBI chr27:4,614,878...4,622,013
Ensembl chr27:4,614,864...4,621,922
JBrowse link
G HTR2A 5-hydroxytryptamine receptor 2A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3766710|PMID:17408640) Ensembl
MGI
PMID:17408640 GO_REF:0000107 MGI:3766710 NCBI chr22:4,453,715...4,510,934
Ensembl chr22:4,453,715...4,511,037
JBrowse link
G IFNG interferon gamma involved_in ISO (MGI:6304699|PMID:29061364) ARUK-UCL PMID:29061364 MGI:6304699 NCBI chr10:10,406,866...10,411,698
Ensembl chr10:10,406,867...10,411,698
JBrowse link
G IGF1 insulin like growth factor 1 involved_in ISO (PMID:7688386) BHF-UCL PMID:7688386 NCBI chr15:41,203,320...41,275,964
Ensembl chr15:41,202,518...41,275,794
JBrowse link
G INS insulin involved_in ISO (PMID:381941)
(PMID:7688386)
BHF-UCL PMID:381941 PMID:7688386 NCBI chr18:46,324,047...46,324,933
Ensembl chr18:46,324,041...46,325,122
JBrowse link
G INSR insulin receptor involved_in ISO (PMID:7693131) BHF-UCL PMID:7693131 NCBI chr20:52,017,261...52,136,061
Ensembl chr20:52,021,887...52,136,046
JBrowse link
G MIF macrophage migration inhibitory factor ISO RGD PMID:11086030 RGD:1642010
G MLXIPL MLX interacting protein like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:6,617,398...6,652,201
Ensembl chr 6:6,633,231...6,652,198
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor ISO RGD PMID:22842522 RGD:7207891 NCBI chr13:25,200,772...25,205,309
Ensembl chr13:25,200,577...25,205,309
JBrowse link
G P2RX7 purinergic receptor P2X 7 involved_in ISO (PMID:22898868) CACAO PMID:22898868 NCBI chr26:7,928,863...7,983,956
Ensembl chr26:7,940,985...7,983,740
JBrowse link
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISO PMID:11069105 UniProt PMID:11069105 RGD:8554193 NCBI chr 4:68,579,061...68,614,548
Ensembl chr 4:68,579,037...68,611,841
JBrowse link
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in ISO PMID:11069105 UniProt PMID:11069105 RGD:8554193 NCBI chr 5:52,809,792...52,855,072
Ensembl chr 5:52,815,609...52,876,609
JBrowse link
G PRXL2C peroxiredoxin like 2C involved_in ISO (PMID:29901208) UniProt PMID:29901208 NCBI chr 1:70,199,278...70,209,026
Ensembl chr 1:70,199,357...70,208,534
JBrowse link
G PSEN1 presenilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:46,495,551...46,569,532
Ensembl chr 8:46,495,624...46,569,532
JBrowse link
G SLC4A4 solute carrier family 4 member 4 acts_upstream_of ISO (PMID:21976511)
(MGI:5295108|PMID:21976511)
ARUK-UCL PMID:21976511 MGI:5295108 NCBI chr13:60,375,215...60,670,664
Ensembl chr13:60,328,136...60,666,728
JBrowse link
G ZBTB20 zinc finger and BTB domain containing 20 involved_in ISO (MGI:5913553|PMID:28327662) UniProt PMID:28327662 MGI:5913553 NCBI chr33:18,860,824...19,277,691
Ensembl chr33:18,529,132...18,759,058
JBrowse link
positive regulation of guanylate cyclase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADORA2B adenosine A2b receptor acts_upstream_of_or_within ISO (MGI:3794903|PMID:18340377) MGI PMID:18340377 MGI:3794903 NCBI chr 5:39,884,375...39,908,214 JBrowse link
G GUCA1B guanylate cyclase activator 1B involved_in IEA GOC GO_REF:0000108 NCBI chr12:10,796,961...10,806,796
Ensembl chr12:10,797,921...10,834,237
JBrowse link
G GUCA2A guanylate cyclase activator 2A involved_in IEA GOC GO_REF:0000108 NCBI chr15:1,090,109...1,091,277
Ensembl chr15:1,090,109...1,091,375
JBrowse link
G GUCA2B guanylate cyclase activator 2B involved_in IEA GOC GO_REF:0000108 NCBI chr15:1,094,283...1,096,605
Ensembl chr15:1,094,276...1,096,688
JBrowse link
G NOS2 nitric oxide synthase 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:42,171,821...42,210,217
Ensembl chr 9:42,171,821...42,208,588
JBrowse link
G NOS3 nitric oxide synthase 3 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr16:15,054,196...15,072,454
Ensembl chr16:15,011,344...15,072,277
JBrowse link
positive regulation of interleukin-4-dependent isotype switching to IgE isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TNFSF4 TNF superfamily member 4 involved_in ISO (MGI:3763508|PMID:12496423) BHF-UCL PMID:12496423 MGI:3763508 NCBI chr 7:25,883,297...25,909,608
Ensembl chr 7:25,883,251...25,906,892
JBrowse link
positive regulation of isotype switching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOSC3 exosome component 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5009766|PMID:21255825) Ensembl
MGI
PMID:21255825 GO_REF:0000107 MGI:5009766 NCBI chr11:54,072,993...54,079,024
Ensembl chr11:54,073,313...54,078,598
JBrowse link
G EXOSC6 exosome component 6 acts_upstream_of_or_within ISO (MGI:5009766|PMID:21255825) MGI PMID:21255825 MGI:5009766 NCBI chr 5:76,286,286...76,287,667
Ensembl chr 5:76,286,789...76,287,976
JBrowse link
G HMCES 5-hydroxymethylcytosine binding, ES cell specific involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:2,808,687...2,831,123
Ensembl chr20:2,808,689...2,830,462
JBrowse link
G KMT5B lysine methyltransferase 5B involved_in ISO (MGI:6370097|PMID:28114273) UniProt PMID:28114273 MGI:6370097 NCBI chr18:49,655,783...49,691,899
Ensembl chr18:49,637,610...49,827,034
JBrowse link
G KMT5C lysine methyltransferase 5C involved_in ISO (MGI:6370097|PMID:28114273) UniProt PMID:28114273 MGI:6370097 NCBI chr 1:102,334,687...102,342,090
Ensembl chr 1:102,333,543...102,342,118
JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr 2:84,539,724...84,549,402
Ensembl chr 2:84,545,226...84,549,356
JBrowse link
G PAXIP1 PAX interacting protein 1 involved_in ISO (MGI:4821506|PMID:20671152) UniProt PMID:20671152 MGI:4821506 NCBI chr16:18,066,289...18,116,007
Ensembl chr16:18,066,246...18,112,506
JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in ISO (MGI:5468036|PMID:23306439), (MGI:5476381|PMID:23333305), (MGI:5490831|PMID:23333306) UniProt PMID:23306439 PMID:23333305 PMID:23333306 MGI:5468036 MGI:5476381 MGI:5490831 NCBI chr19:52,661,278...52,711,969
Ensembl chr19:52,661,155...52,709,279
JBrowse link
G SHLD1 shieldin complex subunit 1 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr24:15,957,863...16,037,336
Ensembl chr24:15,957,852...16,038,008
JBrowse link
G SHLD2 shieldin complex subunit 2 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr 4:34,665,111...34,740,645
Ensembl chr 4:34,688,245...34,763,705
JBrowse link
G SHLD3 shieldin complex subunit 3 involved_in ISO (PMID:29656893) UniProt PMID:29656893
G TFRC transferrin receptor involved_in ISS UniProt GO_REF:0000024 NCBI chr33:29,206,024...29,237,221
Ensembl chr33:29,208,609...29,238,242
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:10,263,650...10,362,646
Ensembl chr30:10,263,650...10,336,134
JBrowse link
positive regulation of isotype switching to IgA isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B9D2 B9 domain containing 2 acts_upstream_of_or_within ISO (PMID:14988498) MGI PMID:14988498 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G MLH1 mutL homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:6,889,108...6,938,117
Ensembl chr23:6,889,135...6,938,116
JBrowse link
G MSH2 mutS homolog 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:49,517,448...49,594,001
Ensembl chr10:49,517,369...49,594,210
JBrowse link
G NSD2 nuclear receptor binding SET domain protein 2 acts_upstream_of_or_within ISO (MGI:5462481|PMID:23241889) MGI PMID:23241889 MGI:5462481 NCBI chr 3:62,164,888...62,228,006
Ensembl chr 3:62,167,939...62,228,035
JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component involved_in ISO (MGI:1342394|PMID:10430621) CAFA PMID:10430621 MGI:1342394 NCBI chr 6:11,411,062...11,438,767
Ensembl chr 6:11,349,453...11,438,940
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in ISS AgBase GO_REF:0000024 NCBI chr 1:112,629,476...112,643,885
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G TNFSF13 TNF superfamily member 13 acts_upstream_of_or_within ISO (MGI:3037416|PMID:14988498)
(PMID:14988498)
MGI PMID:14988498 MGI:3037416 NCBI chr 5:32,482,723...32,484,790
Ensembl chr 5:32,482,723...32,484,789
JBrowse link
positive regulation of isotype switching to IgE isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLCF1 cardiotrophin like cytokine factor 1 involved_in ISO (MGI:3777853|PMID:12023368) BHF-UCL PMID:12023368 MGI:3777853 NCBI chr18:50,084,120...50,093,825
Ensembl chr18:50,083,915...50,102,651
JBrowse link
G IL4 interleukin 4 involved_in
acts_upstream_of_or_within
IBA
ISO
ISS
(PMID:21873635)
(MGI:3037416|PMID:14988498)
GO_Central
MGI
UniProt
PMID:14988498 PMID:21873635 GO_REF:0000024 MGI:3037416 NCBI chr11:20,972,693...20,981,539
Ensembl chr11:20,972,690...20,981,534
JBrowse link
G STAT6 signal transducer and activator of transcription 6 acts_upstream_of_or_within ISO (MGI:1345885|PMID:10490661) MGI PMID:10490661 MGI:1345885 NCBI chr10:1,232,515...1,247,011
Ensembl chr10:1,233,691...1,247,075
JBrowse link
positive regulation of isotype switching to IgG isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATAD5 ATPase family AAA domain containing 5 acts_upstream_of_or_within ISO (MGI:5763555|PMID:25404367) MGI PMID:25404367 MGI:5763555 NCBI chr 9:40,869,778...40,917,976
Ensembl chr 9:40,870,924...40,915,629
JBrowse link
G CD28 CD28 molecule acts_upstream_of_or_within ISO (MGI:62368|PMID:7688139) MGI PMID:7688139 MGI:62368 NCBI chr37:12,503,849...12,536,362
Ensembl chr37:12,503,811...12,532,854
JBrowse link
G CD40 CD40 molecule acts_upstream_of_or_within ISO (MGI:2670820|PMID:12882831) MGI PMID:12882831 MGI:2670820 NCBI chr24:33,352,992...33,383,488
Ensembl chr24:33,372,930...33,383,301
JBrowse link
G IFNG interferon gamma acts_upstream_of_or_within ISO (MGI:2670820|PMID:12882831) MGI PMID:12882831 MGI:2670820 NCBI chr10:10,406,866...10,411,698
Ensembl chr10:10,406,867...10,411,698
JBrowse link
G IL2 interleukin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:87443|PMID:1830926) Ensembl
MGI
PMID:1830926 GO_REF:0000107 MGI:87443 NCBI chr19:17,750,780...17,756,394
Ensembl chr19:17,750,780...17,756,394
JBrowse link
G IL4 interleukin 4 involved_in
acts_upstream_of_or_within
ISS
ISO
IBA
(MGI:2670820|PMID:12882831), (MGI:3037416|PMID:14988498)
(PMID:21873635)
UniProt
MGI
GO_Central
PMID:12882831 PMID:14988498 PMID:21873635 GO_REF:0000024 MGI:2670820 MGI:3037416 NCBI chr11:20,972,693...20,981,539
Ensembl chr11:20,972,690...20,981,534
JBrowse link
G MLH1 mutL homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:6,889,108...6,938,117
Ensembl chr23:6,889,135...6,938,116
JBrowse link
G MSH2 mutS homolog 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:49,517,448...49,594,001
Ensembl chr10:49,517,369...49,594,210
JBrowse link
G PAGR1 PAXIP1 associated glutamate rich protein 1 involved_in ISO (MGI:5752090|PMID:26744420) UniProt PMID:26744420 MGI:5752090 NCBI chr 6:17,876,740...17,879,546 JBrowse link
G PAXIP1 PAX interacting protein 1 involved_in ISO (MGI:5752090|PMID:26744420) UniProt PMID:26744420 MGI:5752090 NCBI chr16:18,066,289...18,116,007
Ensembl chr16:18,066,246...18,112,506
JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component involved_in ISO (MGI:1342394|PMID:10430621) CAFA PMID:10430621 MGI:1342394 NCBI chr 6:11,411,062...11,438,767
Ensembl chr 6:11,349,453...11,438,940
JBrowse link
G PTPRC protein tyrosine phosphatase receptor type C acts_upstream_of_or_within ISO (MGI:85031|PMID:9015183) MGI PMID:9015183 MGI:85031 NCBI chr 7:4,155,876...4,282,151
Ensembl chr 7:4,137,728...4,282,124
JBrowse link
G TBX21 T-box transcription factor 21 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2670820|PMID:12882831) Ensembl
MGI
PMID:12882831 GO_REF:0000107 MGI:2670820 NCBI chr 9:24,077,752...24,086,560
Ensembl chr 9:24,077,761...24,086,261
JBrowse link
positive regulation of meiotic DNA double-strand break formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD31 ankyrin repeat domain 31 involved_in ISO (MGI:6316415|PMID:31003867), (MGI:6316551|PMID:31000436) UniProt PMID:31000436 PMID:31003867 MGI:6316415 MGI:6316551 NCBI chr 3:31,067,936...31,188,066
Ensembl chr 3:31,028,026...31,186,827
JBrowse link
positive regulation of miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LIN28B lin-28 homolog B involved_in ISO (PMID:18951094) CACAO PMID:18951094 NCBI chr12:62,403,831...62,529,435
Ensembl chr12:62,403,333...62,524,838
JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:20547861) UniProt PMID:20547861 NCBI chr10:56,478,771...56,520,992
Ensembl chr10:56,478,680...56,520,967
JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:4,972,369...4,984,218
Ensembl chr15:4,972,956...4,980,371
JBrowse link
G ZSWIM8 zinc finger SWIM-type containing 8 involved_in ISO (PMID:33184234), (PMID:33184237)
(MGI:6508520|PMID:33184237)
UniProt PMID:33184234 PMID:33184237 MGI:6508520 NCBI chr 4:24,220,505...24,234,933
Ensembl chr 4:24,220,797...24,234,933
JBrowse link
positive regulation of miRNA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:4868529|PMID:20975942) MGI PMID:20975942 MGI:4868529 NCBI chr 8:63,970,245...64,029,438
Ensembl chr 8:63,972,027...64,019,879
JBrowse link
G HRAS HRas proto-oncogene, GTPase involved_in ISO (PMID:23027131) BHF-UCL PMID:23027131 NCBI chr18:25,642,844...25,644,717
Ensembl chr18:25,642,844...25,644,717
JBrowse link
G NFKB1 nuclear factor kappa B subunit 1 involved_in ISO (PMID:22357537) BHF-UCL PMID:22357537 NCBI chr32:23,948,598...24,040,704
Ensembl chr32:23,942,954...24,040,703
JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:51,550,003...51,558,861
Ensembl chr18:51,550,040...51,558,875
JBrowse link
positive regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC10 histone deacetylase 10 involved_in ISO (PMID:26221039) UniProt PMID:26221039 NCBI chr10:16,996,307...17,001,365
Ensembl chr10:16,995,762...17,078,262
JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (PMID:15014079) UniProt PMID:15014079 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G PRKCG protein kinase C gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:103,295,110...103,312,562 JBrowse link
positive regulation of mitochondrial DNA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPARGC1A PPARG coactivator 1 alpha involved_in ISO (MGI:5463828|PMID:23150719) UniProt PMID:23150719 MGI:5463828 NCBI chr 3:85,645,942...86,284,570
Ensembl chr 3:86,016,140...86,281,269
JBrowse link
positive regulation of mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GRSF1 G-rich RNA sequence binding factor 1 involved_in ISO (PMID:29967381) UniProt PMID:29967381 NCBI chr13:60,088,198...60,102,292
Ensembl chr13:60,089,429...60,100,099
JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:19509288), (PMID:29967381) UniProt PMID:19509288 PMID:29967381 NCBI chr10:56,478,771...56,520,992
Ensembl chr10:56,478,680...56,520,967
JBrowse link
G SUPV3L1 Suv3 like RNA helicase involved_in ISO (PMID:19864255)
(PMID:19509288), (PMID:29967381)
UniProt PMID:19509288 PMID:19864255 PMID:29967381 NCBI chr 4:20,313,902...20,342,375
Ensembl chr 4:20,313,814...20,340,882
JBrowse link
positive regulation of mitochondrial transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHCHD10 coiled-coil-helix-coiled-coil-helix domain containing 10 involved_in ISO (MGI:5920587|PMID:28585542) UniProt PMID:28585542 MGI:5920587 NCBI chr26:28,742,466...28,744,370
Ensembl chr26:28,742,526...28,744,369
JBrowse link
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISO (MGI:6120139|PMID:23283301) UniProt PMID:23283301 MGI:6120139 NCBI chr 4:68,579,061...68,614,548
Ensembl chr 4:68,579,037...68,611,841
JBrowse link
G SIRT3 sirtuin 3 involved_in ISO (MGI:6120139|PMID:23283301) UniProt PMID:23283301 MGI:6120139 NCBI chr18:25,369,183...25,388,126
Ensembl chr18:25,369,382...25,388,118
JBrowse link
positive regulation of mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1 cyclin B1 ISO c-mos polyadenylation RGD PMID:15291744 RGD:1578405 NCBI chr 2:54,256,957...54,264,749 JBrowse link
G CDC73 cell division cycle 73 involved_in ISO (PMID:19136632) UniProt PMID:19136632 NCBI chr38:5,826,209...5,937,930
Ensembl chr38:5,805,916...5,938,111
JBrowse link
G DHX36 DEAH-box helicase 36 involved_in ISO (PMID:27940037) UniProt PMID:27940037 NCBI chr23:48,404,351...48,456,360
Ensembl chr23:48,407,316...48,456,654
JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (PMID:21329879) UniProt PMID:21329879 NCBI chr30:17,614,502...17,651,715
Ensembl chr30:17,598,076...17,651,290
JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:54,938,250...54,974,536
Ensembl chr11:54,938,372...54,974,547
JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr33:29,911,457...29,943,596
Ensembl chr33:29,912,569...29,962,175
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (PMID:21329879) UniProt PMID:21329879 NCBI chr 1:113,828,219...113,832,747
Ensembl chr 1:113,828,007...113,832,735
JBrowse link
positive regulation of mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT1 CCR4-NOT transcription complex subunit 1 involved_in ISO (PMID:22977175) BHF-UCL PMID:22977175 NCBI chr 2:58,038,456...58,138,364
Ensembl chr 2:58,038,483...58,137,622
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in ISO (PMID:23386060), (PMID:25038453) UniProt PMID:23386060 PMID:25038453 NCBI chr16:40,554,214...40,571,841
Ensembl chr16:40,555,565...40,571,720
JBrowse link
G CNOT8 CCR4-NOT transcription complex subunit 8 involved_in ISO (PMID:22977175) BHF-UCL PMID:22977175 NCBI chr 4:54,935,476...54,956,000
Ensembl chr 4:54,938,961...54,954,416
JBrowse link
G GTPBP1 GTP binding protein 1 involved_in ISO PMID:21515746 UniProt PMID:21515746 RGD:8553842 NCBI chr10:26,074,969...26,103,520
Ensembl chr10:26,075,169...26,100,511
JBrowse link
G HNRNPR heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:15798208 RGD:9854643 NCBI chr 2:76,073,553...76,108,763
Ensembl chr 2:76,077,022...76,105,433
JBrowse link
G KHSRP KH-type splicing regulatory protein involved_in ISO (PMID:16126846) UniProt PMID:16126846 NCBI chr20:53,746,656...53,755,388
Ensembl chr20:53,745,742...53,756,870
JBrowse link
G MOV10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:24726324) UniProt PMID:24726324 NCBI chr17:62,872,607...62,896,208
Ensembl chr17:62,872,756...62,896,395
JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:16410805) RGD
UniProt
PMID:737213 PMID:16410805 RGD:11554176 NCBI chr10:56,478,771...56,520,992
Ensembl chr10:56,478,680...56,520,967
JBrowse link
G PRR5L proline rich 5 like involved_in ISO (PMID:21964062) UniProt PMID:21964062 NCBI chr18:31,708,888...31,849,365
Ensembl chr18:31,706,546...31,849,491
JBrowse link
G RC3H1 ring finger and CCCH-type domains 1 involved_in ISO (MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671)
(MGI:6154479|PMID:25026077)
UniProt PMID:25026077 PMID:26000482 PMID:26255671 MGI:5706859 MGI:5751631 MGI:6154479 NCBI chr 7:25,265,836...25,312,417
Ensembl chr 7:25,233,235...25,305,174
JBrowse link
G UPF1 UPF1 RNA helicase and ATPase involved_in ISO (PMID:25225333), (PMID:26255671)
(PMID:24726324)
UniProt PMID:24726324 PMID:25225333 PMID:26255671 NCBI chr20:44,234,411...44,271,129
Ensembl chr20:44,236,264...44,270,916
JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in ISO (PMID:19909337)
(MGI:3842851|PMID:19322177), (MGI:5706859|PMID:26000482), (MGI:5706909|PMID:23185455), (MGI:5751631|PMID:26255671)
UniProt PMID:19322177 PMID:19909337 PMID:23185455 PMID:26000482 PMID:26255671 MGI:3842851 MGI:5706859 MGI:5706909 MGI:5751631 NCBI chr15:4,972,369...4,984,218
Ensembl chr15:4,972,956...4,980,371
JBrowse link
G ZC3HAV1 zinc finger CCCH-type containing, antiviral 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:9,598,339...9,660,540
Ensembl chr16:9,598,405...9,664,569
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in ISO (MGI:5795825|PMID:15634918) UniProt PMID:15634918 MGI:5795825 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065
JBrowse link
positive regulation of mRNA cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT21 nudix hydrolase 21 involved_in ISO (PMID:15937220) UniProt PMID:15937220 NCBI chr 2:59,736,739...59,751,967
Ensembl chr 2:59,736,186...59,751,704
JBrowse link
positive regulation of mRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 ISO RGD PMID:9792439 RGD:10041038 NCBI chr27:37,102,728...37,114,084
Ensembl chr27:37,103,016...37,114,556
JBrowse link
positive regulation of mRNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPEB1 cytoplasmic polyadenylation element binding protein 1 involved_in ISO (PMID:28383716) UniProt PMID:28383716 NCBI chr 3:54,405,140...54,499,614
Ensembl chr 3:54,405,717...54,500,221
JBrowse link
G CPEB3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (MGI:5300629|PMID:22153079) UniProt PMID:22153079 MGI:5300629 NCBI chr28:6,523,894...6,724,010
Ensembl chr28:6,529,212...6,723,454
JBrowse link
G HSF1 heat shock transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:37,724,741...37,745,259
Ensembl chr13:37,724,759...37,745,252
JBrowse link
G NUDT21 nudix hydrolase 21 involved_in ISO (PMID:15937220) UniProt PMID:15937220 NCBI chr 2:59,736,739...59,751,967
Ensembl chr 2:59,736,186...59,751,704
JBrowse link
positive regulation of mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADARB1 adenosine deaminase RNA specific B1 ISO RGD PMID:10331393 RGD:10450893 NCBI chr31:38,715,529...38,799,353
Ensembl chr31:38,678,184...38,796,521
JBrowse link
positive regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELF3 CUGBP Elav-like family member 3 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chr17:60,733,148...60,747,553
Ensembl chr17:60,735,628...60,746,615
JBrowse link
G CELF4 CUGBP Elav-like family member 4 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chr 7:52,940,941...53,012,206
Ensembl chr 7:52,838,558...53,010,041
JBrowse link
G DAZAP1 DAZ associated protein 1 acts_upstream_of_or_within ISO (MGI:5532638|PMID:23636947) MGI PMID:23636947 MGI:5532638 NCBI chr20:57,411,249...57,435,852
Ensembl chr20:57,411,825...57,435,799
JBrowse link
G EIF4A3 eukaryotic translation initiation factor 4A3 acts_upstream_of_or_within ISO (MGI:3814796|PMID:18480465) MGI PMID:18480465 MGI:3814796 NCBI chr 9:1,582,950...1,593,893
Ensembl chr 9:1,582,993...1,593,892
JBrowse link
G HMX2 H6 family homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5532638|PMID:23636947) Ensembl
MGI
PMID:23636947 GO_REF:0000107 MGI:5532638 NCBI chr28:32,679,585...32,687,972
Ensembl chr28:32,679,579...32,687,982
JBrowse link
G HSPA8 heat shock protein family A (Hsp70) member 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5532638|PMID:23636947) Ensembl
MGI
PMID:23636947 GO_REF:0000107 MGI:5532638 NCBI chr 5:11,292,219...11,296,851
Ensembl chr 5:11,292,262...11,296,797
JBrowse link
G LMNTD2 lamin tail domain containing 2 acts_upstream_of_or_within ISO (MGI:5532638|PMID:23636947) MGI PMID:23636947 MGI:5532638 NCBI chr18:25,663,814...25,669,420
Ensembl chr18:25,663,814...25,668,768
JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:54,938,250...54,974,536
Ensembl chr11:54,938,372...54,974,547
JBrowse link
G NUP98 nucleoporin 98 and 96 precursor involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:26,231,585...26,348,019
Ensembl chr21:26,220,963...26,336,020
JBrowse link
G OBI1 ORC ubiquitin ligase 1 acts_upstream_of_or_within ISO (MGI:5532638|PMID:23636947) MGI PMID:23636947 MGI:5532638 NCBI chr22:32,006,441...32,047,609
Ensembl chr22:32,007,210...32,047,527
JBrowse link
G PRDX6 peroxiredoxin 6 involved_in ISO (PMID:16186110) UniProt PMID:16186110 NCBI chr 7:25,663,238...25,675,855
Ensembl chr 7:25,663,579...25,675,754
JBrowse link
G PRPF19 pre-mRNA processing factor 19 acts_upstream_of_or_within ISO (MGI:3814796|PMID:18480465) MGI PMID:18480465 MGI:3814796 NCBI chr18:55,389,902...55,400,241
Ensembl chr18:55,389,897...55,400,240
JBrowse link
G SF3B4 splicing factor 3b subunit 4 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:5532638|PMID:23636947)
GO_Central
MGI
PMID:21873635 PMID:23636947 MGI:5532638 NCBI chr17:59,208,989...59,214,643
Ensembl chr17:59,208,990...59,213,991
JBrowse link
G SLC39A5 solute carrier family 39 member 5 acts_upstream_of_or_within ISO (MGI:5532638|PMID:23636947) MGI PMID:23636947 MGI:5532638 NCBI chr10:552,755...557,319 JBrowse link
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 acts_upstream_of_or_within ISO (MGI:5532638|PMID:23636947) MGI PMID:23636947 MGI:5532638 NCBI chr 1:107,340,484...107,356,280
Ensembl chr 1:107,113,974...107,356,241
JBrowse link
G SNW1 SNW domain containing 1 involved_in ISO (PMID:12840015) UniProt PMID:12840015 NCBI chr 8:50,478,924...50,512,360
Ensembl chr 8:50,479,338...50,512,243
JBrowse link
G THRAP3 thyroid hormone receptor associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:5,955,469...6,022,442
Ensembl chr15:5,956,316...6,021,875
JBrowse link
G TRA2A transformer 2 alpha homolog acts_upstream_of_or_within ISO (MGI:5304203|PMID:22194695) MGI PMID:22194695 MGI:5304203 NCBI chr14:37,159,890...37,183,457
Ensembl chr14:37,160,872...37,183,274
JBrowse link
G TRA2B transformer 2 beta homolog acts_upstream_of_or_within
involved_in
ISO (MGI:5304203|PMID:22194695)
(PMID:15009664)
MGI
UniProt
PMID:15009664 PMID:22194695 MGI:5304203 NCBI chr34:18,637,725...18,656,869
Ensembl chr34:18,638,325...18,657,862
JBrowse link
G ZFP64 ZFP64 zinc finger protein acts_upstream_of_or_within ISO (MGI:5532638|PMID:23636947) MGI PMID:23636947 MGI:5532638 NCBI chr24:38,201,824...38,289,395
Ensembl chr24:38,203,028...38,289,580
JBrowse link
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO2 argonaute RISC catalytic component 2 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chr13:35,169,243...35,230,252
Ensembl chr13:35,180,912...35,268,577
JBrowse link
G CNOT1 CCR4-NOT transcription complex subunit 1 involved_in ISO (PMID:21278420) UniProt PMID:21278420 NCBI chr 2:58,038,456...58,138,364
Ensembl chr 2:58,038,483...58,137,622
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:40,554,214...40,571,841
Ensembl chr16:40,555,565...40,571,720
JBrowse link
G CPEB3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chr28:6,523,894...6,724,010
Ensembl chr28:6,529,212...6,723,454
JBrowse link
G DHX36 DEAH-box helicase 36 involved_in ISO (PMID:14731398) UniProt PMID:14731398 NCBI chr23:48,404,351...48,456,360
Ensembl chr23:48,407,316...48,456,654
JBrowse link
G NANOS1 nanos C2HC-type zinc finger 1 involved_in ISO (PMID:24736845) BHF-UCL PMID:24736845 NCBI chr28:29,285,422...29,287,236 JBrowse link
G NANOS2 nanos C2HC-type zinc finger 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:109,716,634...109,717,701
Ensembl chr 1:109,716,699...109,717,115
JBrowse link
G NANOS3 nanos C2HC-type zinc finger 3 involved_in ISO (PMID:24736845) BHF-UCL PMID:24736845
G PABPC1 poly(A) binding protein cytoplasmic 1 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chr13:2,563,698...2,580,610
Ensembl chr13:2,564,065...2,580,368
JBrowse link
G TNRC6B trinucleotide repeat containing adaptor 6B involved_in ISO (PMID:19716330) UniProt PMID:19716330 NCBI chr10:24,852,168...25,094,400
Ensembl chr10:24,813,854...25,094,393
JBrowse link
G TNRC6C trinucleotide repeat containing adaptor 6C involved_in ISO (PMID:21984185) UniProt PMID:21984185 NCBI chr 9:3,018,599...3,122,664
Ensembl chr 9:3,020,533...3,171,471
JBrowse link
G TOB1 transducer of ERBB2, 1 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chr 9:26,736,805...26,741,119
Ensembl chr 9:26,736,675...26,740,177
Ensembl chr 9:26,736,675...26,740,177
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in ISO (MGI:5487524|PMID:21278420)
(PMID:12748283)
UniProt PMID:12748283 PMID:21278420 MGI:5487524 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in ISO PMID:12748283 UniProt PMID:12748283 RGD:11344945 NCBI chr 8:42,663,287...42,668,665
Ensembl chr 8:42,664,223...42,668,514
JBrowse link
G ZFP36L2 ZFP36 ring finger protein like 2 involved_in ISO (MGI:5320815|PMID:22367205) UniProt PMID:22367205 MGI:5320815 NCBI chr10:45,746,952...45,751,268
Ensembl chr10:45,748,936...45,751,250
JBrowse link
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO2 argonaute RISC catalytic component 2 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chr13:35,169,243...35,230,252
Ensembl chr13:35,180,912...35,268,577
JBrowse link
G BTG2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO (PMID:18337750) MGI PMID:18337750 NCBI chr38:70,921...75,149
Ensembl chr38:70,452...72,976
JBrowse link
G CNOT1 CCR4-NOT transcription complex subunit 1 involved_in ISO (PMID:23644599)
(PMID:21278420)
BHF-UCL
UniProt
PMID:21278420 PMID:23644599 NCBI chr 2:58,038,456...58,138,364
Ensembl chr 2:58,038,483...58,137,622
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:40,554,214...40,571,841
Ensembl chr16:40,555,565...40,571,720
JBrowse link
G CPEB3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chr28:6,523,894...6,724,010
Ensembl chr28:6,529,212...6,723,454
JBrowse link
G EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:32354837) UniProt PMID:32354837 NCBI chr26:24,355,326...24,403,306
Ensembl chr26:24,355,826...24,402,827
JBrowse link
G PABPC1 poly(A) binding protein cytoplasmic 1 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chr13:2,563,698...2,580,610
Ensembl chr13:2,564,065...2,580,368
JBrowse link
G TNRC6B trinucleotide repeat containing adaptor 6B involved_in ISO (PMID:19716330) UniProt PMID:19716330 NCBI chr10:24,852,168...25,094,400
Ensembl chr10:24,813,854...25,094,393
JBrowse link
G TNRC6C trinucleotide repeat containing adaptor 6C involved_in ISO (PMID:21984185) UniProt PMID:21984185 NCBI chr 9:3,018,599...3,122,664
Ensembl chr 9:3,020,533...3,171,471
JBrowse link
G TOB1 transducer of ERBB2, 1 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chr 9:26,736,805...26,741,119
Ensembl chr 9:26,736,675...26,740,177
Ensembl chr 9:26,736,675...26,740,177
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in ISO (MGI:5487524|PMID:21278420)
(PMID:10330172)
(MGI:5795819|PMID:20595389)
UniProt PMID:10330172 PMID:20595389 PMID:21278420 MGI:5487524 MGI:5795819 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065
JBrowse link
positive regulation of nuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB2 high mobility group box 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:23,939,024...23,941,720
Ensembl chr25:23,939,027...23,941,606
JBrowse link
positive regulation of nucleic acid-templated transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZMIZ1 zinc finger MIZ-type containing 1 involved_in ISO (PMID:14609956), (PMID:16777850) UniProt PMID:14609956 PMID:16777850 NCBI chr 4:28,807,368...29,035,946
Ensembl chr 4:28,854,908...29,045,986
JBrowse link
positive regulation of pri-miRNA transcription by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APLN apelin involved_in ISO (PMID:23263626) BHF-UCL PMID:23263626 NCBI chr  X:100,863,360...100,873,105 JBrowse link
G ATOH8 atonal bHLH transcription factor 8 involved_in ISO (PMID:27780851) BHF-UCL PMID:27780851 NCBI chr17:39,255,725...39,280,022 JBrowse link
G B9D2 B9 domain containing 2 involved_in ISO (PMID:26311719), (PMID:26493107) BHF-UCL PMID:26311719 PMID:26493107 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G BMP2 bone morphogenetic protein 2 involved_in ISO (MGI:4939577|PMID:21145505) BHF-UCL PMID:21145505 MGI:4939577 NCBI chr24:15,199,667...15,211,509
Ensembl chr24:15,200,291...15,212,217
JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923
JBrowse link
G CTCF CCCTC-binding factor involved_in ISO PMID:27124358 BHF-UCL PMID:27124358 RGD:11344932 NCBI chr 5:81,808,512...81,863,811
Ensembl chr 5:81,809,393...81,858,655
JBrowse link
G EGR1 early growth response 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:26,046,195...26,049,806
Ensembl chr11:26,046,228...26,048,575
JBrowse link
G ETS1 ETS proto-oncogene 1, transcription factor involved_in ISO (PMID:21711453) BHF-UCL PMID:21711453 NCBI chr 5:6,059,023...6,189,516
Ensembl chr 5:6,058,935...6,186,232
JBrowse link
G FOS Fos proto-oncogene, AP-1 transcription factor subunit involved_in ISO PMID:18384814 BHF-UCL PMID:18384814 RGD:10402042 NCBI chr 8:48,330,856...48,334,273
Ensembl chr 8:48,331,026...48,333,467
JBrowse link
G FOSL1 FOS like 1, AP-1 transcription factor subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:51,366,719...51,374,411
Ensembl chr18:51,368,352...51,373,748
JBrowse link
G FOXO3 forkhead box O3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:65,552,455...65,673,467
Ensembl chr12:65,552,310...65,670,198
JBrowse link
G GATA2 GATA binding protein 2 involved_in ISO (PMID:27780851) BHF-UCL PMID:27780851 NCBI chr20:2,472,251...2,488,380
Ensembl chr20:2,473,912...2,480,991
JBrowse link
G GATA3 GATA binding protein 3 involved_in ISO (PMID:26451614) BHF-UCL PMID:26451614 NCBI chr 2:28,068,143...28,098,445
Ensembl chr 2:28,069,051...28,087,760
JBrowse link
G GNL3 G protein nucleolar 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:37,103,298...37,110,350
Ensembl chr20:37,103,320...37,110,207
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:36,614,045...36,656,692
Ensembl chr 8:36,614,045...36,656,692
JBrowse link
G IL10 interleukin 10 involved_in ISO (PMID:23071313) ARUK-UCL PMID:23071313 NCBI chr 7:5,933,285...5,937,057
Ensembl chr 7:5,933,285...5,937,057
JBrowse link
G JUN Jun proto-oncogene, AP-1 transcription factor subunit involved_in ISO (PMID:19962668), (PMID:24375836)
PMID:18384814
BHF-UCL PMID:18384814 PMID:19962668 PMID:24375836 RGD:10402042 NCBI chr 5:50,966,698...50,968,939 JBrowse link
G KLF4 Kruppel like factor 4 involved_in ISO (PMID:23867820) BHF-UCL PMID:23867820 NCBI chr11:62,881,840...62,886,676
Ensembl chr11:62,882,767...62,928,251
JBrowse link
G KLF5 Kruppel like factor 5 involved_in ISO (PMID:28408180) BHF-UCL PMID:28408180 NCBI chr22:27,163,179...27,185,241
Ensembl chr22:27,162,397...27,200,871
JBrowse link
G MRTFA myocardin related transcription factor A involved_in ISO (PMID:23764775) ARUK-UCL PMID:23764775 NCBI chr10:24,561,161...24,759,586
Ensembl chr10:24,561,161...24,759,081
JBrowse link
G MRTFB myocardin related transcription factor B involved_in ISO (PMID:23764775) ARUK-UCL PMID:23764775 NCBI chr 6:28,902,749...29,113,448
Ensembl chr 6:28,918,350...29,098,220
JBrowse link
G NFKB1 nuclear factor kappa B subunit 1 involved_in ISO PMID:24676391 BHF-UCL PMID:24676391 RGD:10400879 NCBI chr32:23,948,598...24,040,704
Ensembl chr32:23,942,954...24,040,703
JBrowse link
G NGFR nerve growth factor receptor involved_in ISO (PMID:26268439) BHF-UCL PMID:26268439 NCBI chr 9:25,598,468...25,621,021
Ensembl chr 9:25,601,074...25,623,274
JBrowse link
G NR3C1 nuclear receptor subfamily 3 group C member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:38,124,568...38,242,510
Ensembl chr 2:38,123,190...38,240,755
JBrowse link
G PDGFB platelet derived growth factor subunit B involved_in ISO (PMID:19088079) BHF-UCL PMID:19088079 NCBI chr10:25,798,877...25,819,422
Ensembl chr10:25,798,938...25,817,746
JBrowse link
G PPARG peroxisome proliferator activated receptor gamma involved_in ISO (PMID:28566713) BHF-UCL PMID:28566713 NCBI chr20:6,134,618...6,265,481
Ensembl chr20:6,050,357...6,207,981
JBrowse link
G PRL prolactin involved_in ISO (PMID:23619365) BHF-UCL PMID:23619365 NCBI chr35:20,673,830...20,683,824
Ensembl chr35:20,673,839...20,683,824
JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:51,550,003...51,558,861
Ensembl chr18:51,550,040...51,558,875
JBrowse link
G SMAD1 SMAD family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:44,093,491...44,171,177
Ensembl chr15:44,095,497...44,170,098
JBrowse link
G SMAD3 SMAD family member 3 involved_in ISO (PMID:26311719) BHF-UCL PMID:26311719 NCBI chr30:31,246,313...31,360,098
Ensembl chr30:31,245,657...31,363,337
JBrowse link
G SMAD4 SMAD family member 4 involved_in ISO (MGI:6094665|PMID:23426367) BHF-UCL PMID:23426367 MGI:6094665 NCBI chr 1:23,875,989...23,930,027
Ensembl chr 1:23,882,139...23,969,405
JBrowse link
G SMAD6 SMAD family member 6 involved_in ISO (MGI:4939577|PMID:21145505) BHF-UCL PMID:21145505 MGI:4939577 NCBI chr30:30,938,908...31,014,259
Ensembl chr30:30,937,849...31,014,583
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO (PMID:25569094) BHF-UCL PMID:25569094 NCBI chr20:50,175,489...50,268,865
Ensembl chr20:50,175,687...50,268,836
JBrowse link
G SPI1 Spi-1 proto-oncogene involved_in ISO (PMID:20972335)
(MGI:5693226|PMID:18384814)
BHF-UCL PMID:18384814 PMID:20972335 MGI:5693226 NCBI chr18:42,253,849...42,269,497
Ensembl chr18:42,253,811...42,269,727
JBrowse link
G SREBF1 sterol regulatory element binding transcription factor 1 involved_in ISO (PMID:24296663)
(MGI:5501359|PMID:23823476)
BHF-UCL PMID:23823476 PMID:24296663 MGI:5501359 NCBI chr 5:41,663,809...41,686,764
Ensembl chr 5:41,663,773...41,686,776
JBrowse link
G SREBF2 sterol regulatory element binding transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:23,451,923...23,532,765
Ensembl chr10:23,452,561...23,518,689
Ensembl chr10:23,452,561...23,518,689
JBrowse link
G SRF serum response factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:11,664,441...11,673,846
Ensembl chr12:11,664,527...11,671,533
JBrowse link
G STAT3 signal transducer and activator of transcription 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:20,539,660...20,614,631
Ensembl chr 9:20,539,697...20,612,672
JBrowse link
G TEAD1 TEA domain transcription factor 1 involved_in ISO (PMID:26045994) BHF-UCL PMID:26045994 NCBI chr21:35,667,862...35,935,180
Ensembl chr21:35,566,865...35,934,438
JBrowse link
G TERT telomerase reverse transcriptase involved_in ISO (PMID:25569094) BHF-UCL PMID:25569094 NCBI chr34:11,288,622...11,307,790
Ensembl chr34:11,288,622...11,307,951
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr38:13,430,832...13,511,655
Ensembl chr38:13,429,148...13,510,242
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in ISO PMID:21704009 BHF-UCL PMID:21704009 RGD:12792988 NCBI chr11:56,191,383...56,223,042
Ensembl chr11:56,161,772...56,218,594
JBrowse link
G TNF tumor necrosis factor involved_in
acts_upstream_of
IEA
ISO
(PMID:22499991) Ensembl
BHF-UCL
PMID:22499991 GO_REF:0000107 NCBI chr12:1,074,561...1,076,425
Ensembl chr12:1,074,552...1,076,425
JBrowse link
G TP53 tumor protein p53 involved_in ISO (PMID:20546595)
(PMID:22499991)
BHF-UCL PMID:20546595 PMID:22499991 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
G WT1 WT1 transcription factor involved_in ISO (PMID:23042785) ARUK-UCL PMID:23042785 NCBI chr18:35,099,660...35,148,767
Ensembl chr18:35,103,934...35,148,000
JBrowse link
positive regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B9D2 B9 domain containing 2 involved_in ISO (PMID:18548003) BHF-UCL PMID:18548003 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G DDX5 DEAD-box helicase 5 involved_in ISO (PMID:18548003) BHF-UCL PMID:18548003 NCBI chr 9:12,300,706...12,307,931
Ensembl chr 9:12,300,708...12,307,663
JBrowse link
G EGFR epidermal growth factor receptor involved_in ISO (PMID:21673316) BHF-UCL PMID:21673316 NCBI chr18:5,983,669...6,044,092
Ensembl chr18:5,982,770...6,042,631
JBrowse link
G IL6 interleukin 6 acts_upstream_of_or_within ISO (PMID:27252421) ARUK-UCL PMID:27252421 NCBI chr14:36,474,268...36,478,519
Ensembl chr14:36,473,394...36,478,519
JBrowse link
G LIN28A lin-28 homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:73,638,438...73,656,841
Ensembl chr 2:73,614,531...73,628,211
Ensembl chr 2:73,614,531...73,628,211
JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 involved_in ISO (PMID:24375836) BHF-UCL PMID:24375836 NCBI chr30:30,683,192...30,760,479
Ensembl chr30:30,683,107...30,760,479
JBrowse link
G MAP2K2 mitogen-activated protein kinase kinase 2 involved_in ISO (PMID:24375836) BHF-UCL PMID:24375836 NCBI chr20:55,465,460...55,487,629
Ensembl chr20:55,465,212...55,487,641
JBrowse link
G MYOCD myocardin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:36,674,476...36,774,435
Ensembl chr 5:36,674,300...36,769,327
JBrowse link
G NR2F1 nuclear receptor subfamily 2 group F member 1 acts_upstream_of_or_within ISO (MGI:5574156|PMID:24349493) MGI PMID:24349493 MGI:5574156 NCBI chr 3:15,707,198...15,716,875
Ensembl chr 3:15,707,640...15,716,875
JBrowse link
G RIPK1 receptor interacting serine/threonine kinase 1 involved_in ISO (PMID:26020802) ARUK-UCL PMID:26020802 NCBI chr35:3,367,796...3,407,631
Ensembl chr35:3,263,226...3,405,883
JBrowse link
G TP53 tumor protein p53 involved_in ISO (PMID:22578566)
(PMID:26100857)
ARUK-UCL
BHF-UCL
PMID:22578566 PMID:26100857 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
positive regulation of reciprocal meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD51AP1 RAD51 associated protein 1 involved_in ISO (PMID:17996711) UniProt PMID:17996711 NCBI chr27:40,303,935...40,341,666
Ensembl chr27:40,303,992...40,341,526
JBrowse link
G UBE2B ubiquitin conjugating enzyme E2 B acts_upstream_of_or_within ISO (MGI:2450033|PMID:12556476) MGI PMID:12556476 MGI:2450033 NCBI chr11:22,523,671...22,541,473
Ensembl chr11:22,525,051...22,540,388
JBrowse link
positive regulation of RNA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IL1B interleukin 1 beta involved_in ISO (PMID:29384235) ARUK-UCL PMID:29384235 NCBI chr17:37,019,329...37,033,388
Ensembl chr17:37,019,329...37,024,458
JBrowse link
G NMD3 NMD3 ribosome export adaptor involved_in ISO (PMID:23782956) ParkinsonsUK-UCL PMID:23782956 NCBI chr34:27,206,988...27,239,241
Ensembl chr34:27,105,754...27,292,008
JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHR aryl hydrocarbon receptor acts_upstream_of_or_within ISO (MGI:62922|PMID:8215422) MGI PMID:8215422 MGI:62922 NCBI chr14:31,743,704...31,793,484
Ensembl chr14:31,686,170...31,791,444
JBrowse link
G CAND1 cullin associated and neddylation dissociated 1 involved_in ISO PMID:10567521 UniProt PMID:10567521 RGD:8553447 NCBI chr10:9,652,176...9,683,373
Ensembl chr10:9,641,732...9,680,118
JBrowse link
G CREB1 cAMP responsive element binding protein 1 ISO RGD PMID:16891311 RGD:1625706 NCBI chr37:15,921,214...15,978,492
Ensembl chr37:15,939,138...15,977,556
JBrowse link
G ESR1 estrogen receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:42,081,952...42,368,544
Ensembl chr 1:42,081,969...42,368,544
JBrowse link
G IKZF1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (MGI:5317044|PMID:21245044) MGI PMID:21245044 MGI:5317044 NCBI chr18:1,661,851...1,750,987
Ensembl chr18:1,661,690...1,770,768
JBrowse link
G PSMC2 proteasome 26S subunit, ATPase 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:16,845,593...16,859,010
Ensembl chr18:16,845,594...16,858,911
JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:113,548,351...113,557,725
Ensembl chr 1:113,548,373...113,557,630
JBrowse link
G TP53 tumor protein p53 involved_in ISO (PMID:24289924) BHF-UCL PMID:24289924 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
positive regulation of RNA splicing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A involved_in ISO (PMID:28377597) ARUK-UCL PMID:28377597 RGD:13464257 NCBI chr31:32,564,970...32,655,232
Ensembl chr31:32,511,502...32,652,572
JBrowse link
G ERN1 endoplasmic reticulum to nucleus signaling 1 involved_in ISO (MGI:6114871|PMID:25164867)
(PMID:11779464), (PMID:19622636)
UniProt PMID:11779464 PMID:19622636 PMID:25164867 MGI:6114871 NCBI chr 9:11,930,614...12,006,724
Ensembl chr 9:11,934,965...12,006,814
JBrowse link
G HABP4 hyaluronan binding protein 4 involved_in ISO (PMID:19523114) UniProt PMID:19523114 NCBI chr 1:70,339,386...70,381,694
Ensembl chr 1:70,340,627...70,377,204
JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:22684629 RGD:10002775 NCBI chr 1:75,499,334...75,511,525
Ensembl chr 1:75,499,393...75,511,425
JBrowse link
G HNRNPLL heterogeneous nuclear ribonucleoprotein L like involved_in ISO (PMID:18669861) UniProt PMID:18669861 NCBI chr17:30,644,695...30,684,485
Ensembl chr17:30,645,676...30,684,377
JBrowse link
G HSP70 heat shock protein 70 involved_in ISO (PMID:20625543) ParkinsonsUK-UCL PMID:20625543 NCBI chr12:1,285,282...1,287,670 JBrowse link
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 ISO RGD PMID:11118435 RGD:632715 NCBI chr13:31,397,501...31,583,198
Ensembl chr13:31,392,842...31,605,257
JBrowse link
G PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:53,447,802...53,527,563
Ensembl chr 2:53,448,286...53,524,970
JBrowse link
G POLR2A RNA polymerase II subunit A involved_in ISO (PMID:21536736) UniProt PMID:21536736 NCBI chr 5:32,403,814...32,429,717
Ensembl chr 5:32,403,829...32,429,681
JBrowse link
G RBM20 RNA binding motif protein 20 involved_in ISO (MGI:5442495|PMID:22466703)
(PMID:22466703)
UniProt PMID:22466703 MGI:5442495 RGD:7241566 NCBI chr28:21,971,424...22,162,798
Ensembl chr28:21,971,504...22,161,476
JBrowse link
G RBM22 RNA binding motif protein 22 involved_in ISO (PMID:22246180) UniProt PMID:22246180 NCBI chr 4:58,460,805...58,470,411
Ensembl chr 4:58,460,847...58,469,762
JBrowse link
G SETX senataxin involved_in ISO (PMID:19515850) UniProt PMID:19515850 NCBI chr 9:51,900,004...51,980,694
Ensembl chr 9:51,901,233...51,978,833
JBrowse link
G SLC38A2 solute carrier family 38 member 2 involved_in ISO (PMID:22215663) ARUK-UCL PMID:22215663 NCBI chr27:8,056,289...8,068,988
Ensembl chr27:8,018,880...8,066,331
JBrowse link
G SMN survival motor neuron acts_upstream_of_or_within ISO (MGI:5318917|PMID:22037760) MGI PMID:22037760 MGI:5318917 NCBI chr 2:54,596,000...54,636,837
Ensembl chr 2:54,596,008...54,636,804
JBrowse link
G SRSF1 serine and arginine rich splicing factor 1 ISO RGD PMID:16308321 RGD:11038784 NCBI chr 9:32,692,517...32,696,325
Ensembl chr 9:32,694,073...32,696,285
JBrowse link
G SRSF5 serine and arginine rich splicing factor 5 ISO RGD PMID:9199345 RGD:11039429 NCBI chr 8:43,514,048...43,519,019
Ensembl chr 8:43,514,076...43,518,481
JBrowse link
G U2AF2 U2 small nuclear RNA auxiliary factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:102,074,759...102,091,326
Ensembl chr 1:102,074,790...102,091,385
JBrowse link
G ZPR1 ZPR1 zinc finger involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:16,778,803...16,787,493
Ensembl chr 5:16,778,832...16,787,105
JBrowse link
positive regulation of rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BUD23 BUD23 rRNA methyltransferase and ribosome maturation factor involved_in ISO (PMID:25851604) UniProt PMID:25851604 NCBI chr 6:6,583,612...6,596,538
Ensembl chr 6:6,583,616...6,595,281
JBrowse link
G DIMT1 DIM1 rRNA methyltransferase and ribosome maturation factor involved_in ISO (PMID:25851604) UniProt PMID:25851604 NCBI chr 2:48,716,849...48,728,707
Ensembl chr 2:48,723,281...48,728,566
JBrowse link
G HEATR1 HEAT repeat containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:3,501,191...3,547,212
Ensembl chr 4:3,501,571...3,547,100
JBrowse link
G RIOK1 RIO kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr35:7,355,484...7,383,537
Ensembl chr35:7,355,295...7,379,307
JBrowse link
G RIOK2 RIO kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:12,548,830...12,571,312
Ensembl chr 3:12,548,847...12,571,298
JBrowse link
G SIRT7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:377,141...383,355
Ensembl chr 9:376,445...442,919
JBrowse link
G TRMT112 tRNA methyltransferase activator subunit 11-2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:52,754,379...52,755,596
Ensembl chr18:52,754,721...52,755,730
JBrowse link
G UTP15 UTP15 small subunit processome component involved_in ISO (PMID:17699751) UniProt PMID:17699751 NCBI chr 2:56,378,116...56,395,009
Ensembl chr 2:56,381,734...56,393,813
JBrowse link
G WDR43 WD repeat domain 43 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:22,769,281...22,813,559
Ensembl chr17:22,769,318...22,812,199
JBrowse link
G WDR75 WD repeat domain 75 involved_in IEA Ensembl GO_REF:0000107 NCBI chr37:157,400...191,127
Ensembl chr37:157,455...190,916
JBrowse link
positive regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP1 poly(ADP-ribose) polymerase 1 involved_in ISO (PMID:28002403)
(MGI:5902647|PMID:28002403)
UniProt PMID:28002403 MGI:5902647 NCBI chr 7:38,503,072...38,542,556
Ensembl chr 7:38,503,067...38,542,127
JBrowse link
G XRCC1 X-ray repair cross complementing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:111,548,719...111,571,816
Ensembl chr 1:111,548,719...111,571,816
JBrowse link
positive regulation of snRNA transcription by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LARP7 La ribonucleoprotein 7, transcriptional regulator involved_in ISO (PMID:28254838) UniProt PMID:28254838 NCBI chr32:32,421,648...32,439,431
Ensembl chr32:32,421,675...32,439,131
JBrowse link
G MEPCE methylphosphate capping enzyme involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:9,234,316...9,239,160
Ensembl chr 6:9,234,356...9,239,859
JBrowse link
G MYOD1 myogenic differentiation 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:40,257,792...40,260,461
Ensembl chr21:40,258,027...40,259,712
JBrowse link
G ZNF143 zinc finger protein 143 involved_in ISO (PMID:9009278) GO_Central PMID:9009278 NCBI chr21:32,757,764...32,817,241
Ensembl chr21:32,775,394...32,817,243
JBrowse link
positive regulation of strand invasion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WRN WRN RecQ like helicase involved_in ISO (PMID:26420422) BHF-UCL PMID:26420422 NCBI chr16:33,164,662...33,304,466
Ensembl chr16:33,167,364...33,304,625
JBrowse link
positive regulation of t-circle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in ISO (MGI:5645200|PMID:22579284) BHF-UCL PMID:22579284 MGI:5645200 NCBI chr 1:110,130,353...110,146,660
Ensembl chr 1:110,130,481...110,146,602
JBrowse link
G SLX1A SLX1 homolog A, structure-specific endonuclease subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:18,171,190...18,174,577 JBrowse link
G SLX4 SLX4 structure-specific endonuclease subunit involved_in ISO (MGI:5645200|PMID:22579284) BHF-UCL PMID:22579284 MGI:5645200 NCBI chr 6:37,648,297...37,666,584
Ensembl chr 6:37,647,976...37,703,190
JBrowse link
positive regulation of telomerase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACD ACD shelterin complex subunit and telomerase recruitment factor involved_in ISO (PMID:17237768) BHF-UCL PMID:17237768 NCBI chr 5:81,789,915...81,792,725
Ensembl chr 5:81,789,997...81,792,639
JBrowse link
G AURKB aurora kinase B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:33,014,098...33,028,951
Ensembl chr 5:33,014,102...33,033,948
JBrowse link
G CCT2 chaperonin containing TCP1 subunit 2 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr10:11,560,287...11,586,559
Ensembl chr10:11,560,396...11,578,433
JBrowse link
G CCT4 chaperonin containing TCP1 subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:61,859,148...61,874,030
Ensembl chr10:61,859,245...61,874,389
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of ISO (MGI:5428344|PMID:22723415) BHF-UCL PMID:22723415 MGI:5428344 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G DKC1 dyskerin pseudouridine synthase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3047190|PMID:15240872) Ensembl
MGI
PMID:15240872 GO_REF:0000107 MGI:3047190 NCBI chr  X:122,838,787...122,850,870
Ensembl chr  X:122,838,645...122,850,884
JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:2,219,535...2,231,868
Ensembl chr30:2,222,898...2,225,418
JBrowse link
G GRHL2 grainyhead like transcription factor 2 involved_in ISO (PMID:19015635), (PMID:20938050) UniProt PMID:19015635 PMID:20938050 NCBI chr13:3,204,898...3,362,533
Ensembl chr13:3,204,925...3,362,096
JBrowse link
G HMBOX1 homeobox containing 1 involved_in ISO (PMID:23685356) BHF-UCL PMID:23685356 NCBI chr25:28,489,472...28,679,322
Ensembl chr25:28,489,506...28,679,748
JBrowse link
G HSP90AA1 heat shock protein 90 alpha family class A member 1 involved_in ISO (PMID:10197982) BHF-UCL PMID:10197982 NCBI chr 8:70,091,203...70,096,107
Ensembl chr 8:70,092,217...70,095,243
JBrowse link
G HSP90AB1 heat shock protein 90 alpha family class B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:12,658,415...12,664,945
Ensembl chr12:12,660,008...12,664,940
JBrowse link
G KLF4 Kruppel like factor 4 involved_in ISO (PMID:20629177) BHF-UCL PMID:20629177 NCBI chr11:62,881,840...62,886,676
Ensembl chr11:62,882,767...62,928,251
JBrowse link
G MAP2K7 mitogen-activated protein kinase kinase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:52,594,450...52,604,236
Ensembl chr20:52,594,536...52,602,150
JBrowse link
G MAP3K4 mitogen-activated protein kinase kinase kinase 4 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 1:49,590,615...49,702,289
Ensembl chr 1:49,548,274...49,702,289
JBrowse link
G MAPK1 mitogen-activated protein kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:31,013,607...31,132,998
Ensembl chr26:31,013,607...31,132,998
JBrowse link
G MAPK15 mitogen-activated protein kinase 15 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr13:37,317,061...37,322,792
Ensembl chr13:37,316,424...37,322,792
JBrowse link
G MAPK3 mitogen-activated protein kinase 3 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 6:18,109,184...18,115,728
Ensembl chr 6:18,109,222...18,114,425
JBrowse link
G MAPKAPK5 MAPK activated protein kinase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:9,380,551...9,420,564
Ensembl chr26:9,319,180...9,419,236
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor involved_in ISO (MGI:5810267|PMID:9637678) BHF-UCL PMID:9637678 MGI:5810267 NCBI chr13:25,200,772...25,205,309
Ensembl chr13:25,200,577...25,205,309
JBrowse link
G NAF1 nuclear assembly factor 1 ribonucleoprotein involved_in ISO (PMID:27510903) BHF-UCL PMID:27510903 NCBI chr15:59,430,809...59,470,306 JBrowse link
G NEK2 NIMA related kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:10,039,617...10,052,511
Ensembl chr 7:10,040,187...10,052,512
JBrowse link
G NEK7 NIMA related kinase 7 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 7:4,557,754...4,755,912
Ensembl chr 7:4,555,231...4,704,955
JBrowse link
G NVL nuclear VCP like involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:40,041,692...40,131,984
Ensembl chr 7:40,041,394...40,131,823
JBrowse link
G PARN poly(A)-specific ribonuclease involved_in ISO (PMID:26482878) BHF-UCL PMID:26482878 NCBI chr 6:28,629,137...28,783,671
Ensembl chr 6:28,629,174...28,783,901
JBrowse link
G PKIB cAMP-dependent protein kinase inhibitor beta involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 1:61,960,466...62,049,553
Ensembl chr 1:61,967,129...62,088,547
JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 1:106,695,649...106,707,229
Ensembl chr 1:106,694,589...106,702,150
JBrowse link
G POT1 protection of telomeres 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:10,987,385...11,067,473
Ensembl chr14:10,987,494...11,066,956
JBrowse link
G PRKCQ protein kinase C theta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:29,319,123...29,505,338
Ensembl chr 2:29,318,870...29,505,337
JBrowse link
G PTGES3 prostaglandin E synthase 3 involved_in ISO (PMID:19740745)
(MGI:5819359|PMID:10197982)
(PMID:10197982), (PMID:19740745)
BHF-UCL PMID:10197982 PMID:19740745 MGI:5819359 NCBI chr10:885,744...903,814
Ensembl chr10:870,392...909,161
JBrowse link
G TCP1 t-complex 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:49,029,260...49,038,023
Ensembl chr 1:49,029,282...49,038,020
JBrowse link
G TNKS tankyrase involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:34,826,248...35,040,004
Ensembl chr16:34,831,662...35,039,946
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in ISO (PMID:23685356), (PMID:25467444)
(MGI:6189679|PMID:29804836)
(PMID:19179534), (PMID:23685356), (PMID:29804836)
BHF-UCL
UniProt
PMID:19179534 PMID:23685356 PMID:25467444 PMID:29804836 MGI:6189679 NCBI chr 5:32,574,153...32,586,222
Ensembl chr 5:32,574,134...32,594,333
JBrowse link
positive regulation of telomere capping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AURKB aurora kinase B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:33,014,098...33,028,951
Ensembl chr 5:33,014,102...33,033,948
JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D involved_in IEA Ensembl GO_REF:0000107 NCBI chr32:6,323,444...6,341,238
Ensembl chr32:6,323,469...6,341,166
JBrowse link
G MAP2K7 mitogen-activated protein kinase kinase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:52,594,450...52,604,236
Ensembl chr20:52,594,536...52,602,150
JBrowse link
G MAP3K4 mitogen-activated protein kinase kinase kinase 4 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 1:49,590,615...49,702,289
Ensembl chr 1:49,548,274...49,702,289
JBrowse link
G MAPK1 mitogen-activated protein kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:31,013,607...31,132,998
Ensembl chr26:31,013,607...31,132,998
JBrowse link
G MAPK15 mitogen-activated protein kinase 15 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr13:37,317,061...37,322,792
Ensembl chr13:37,316,424...37,322,792
JBrowse link
G MAPK3 mitogen-activated protein kinase 3 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 6:18,109,184...18,115,728
Ensembl chr 6:18,109,222...18,114,425
JBrowse link
G MAPKAPK5 MAPK activated protein kinase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:9,380,551...9,420,564
Ensembl chr26:9,319,180...9,419,236
JBrowse link
G NABP2 nucleic acid binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:546,964...551,360
Ensembl chr10:546,964...551,107
JBrowse link
G NEK2 NIMA related kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:10,039,617...10,052,511
Ensembl chr 7:10,040,187...10,052,512
JBrowse link
G NEK7 NIMA related kinase 7 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 7:4,557,754...4,755,912
Ensembl chr 7:4,555,231...4,704,955
JBrowse link
G PKIB cAMP-dependent protein kinase inhibitor beta involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 1:61,960,466...62,049,553
Ensembl chr 1:61,967,129...62,088,547
JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 1:106,695,649...106,707,229
Ensembl chr 1:106,694,589...106,702,150
JBrowse link
G PRKCQ protein kinase C theta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:29,319,123...29,505,338
Ensembl chr 2:29,318,870...29,505,337
JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 involved_in ISO (PMID:23959892) BHF-UCL PMID:23959892 NCBI chr24:47,219,977...47,248,791 JBrowse link
G TNKS tankyrase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:34,826,248...35,040,004
Ensembl chr16:34,831,662...35,039,946
JBrowse link
G TNKS2 tankyrase 2 involved_in ISO (PMID:21531765)
(PMID:25939383)
BHF-UCL PMID:21531765 PMID:25939383 NCBI chr28:6,286,125...6,354,284
Ensembl chr28:6,285,690...6,352,317
JBrowse link
positive regulation of telomere maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATRX ATRX chromatin remodeler involved_in ISO (MGI:4454526|PMID:20110566) UniProt PMID:20110566 MGI:4454526 NCBI chr  X:59,772,067...60,107,016
Ensembl chr  X:59,774,585...60,106,980
JBrowse link
G DHX36 DEAH-box helicase 36 involved_in ISO (PMID:22238380) UniProt PMID:22238380 NCBI chr23:48,404,351...48,456,360
Ensembl chr23:48,407,316...48,456,654
JBrowse link
G GNL3 G protein nucleolar 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:37,103,298...37,110,350
Ensembl chr20:37,103,320...37,110,207
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:6,448,909...6,528,185
Ensembl chr21:6,449,822...6,527,119
JBrowse link
G NBN nibrin involved_in ISO (PMID:16374507) BHF-UCL PMID:16374507 NCBI chr29:35,416,093...35,477,569
Ensembl chr29:35,416,093...35,477,563
JBrowse link
G PML PML nuclear body scaffold involved_in ISO (PMID:22641345), (PMID:26119943) BHF-UCL PMID:22641345 PMID:26119943 NCBI chr30:37,232,337...37,278,434
Ensembl chr30:37,232,306...37,277,741
JBrowse link
G PPP1R10 protein phosphatase 1 regulatory subunit 10 involved_in ISO (PMID:23426265) BHF-UCL PMID:23426265 NCBI chr12:416,533...434,777
Ensembl chr12:417,680...427,799
JBrowse link
G RAD50 RAD50 double strand break repair protein involved_in ISO (PMID:16374507) BHF-UCL PMID:16374507 NCBI chr11:20,836,863...20,928,930
Ensembl chr11:20,836,879...20,928,819
JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 involved_in ISO (MGI:5645200|PMID:22579284) BHF-UCL PMID:22579284 MGI:5645200 NCBI chr24:47,219,977...47,248,791 JBrowse link
G SIRT6 sirtuin 6 involved_in ISO (PMID:23201774), (PMID:25819580) BHF-UCL PMID:23201774 PMID:25819580 NCBI chr20:55,412,989...55,424,944
Ensembl chr20:55,412,646...55,424,944