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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of RNA polymerase II transcription preinitiation complex assembly
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Accession:GO:0045898 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly.
Synonyms:exact_synonym: regulation of RNA polymerase II transcriptional pre-initiation complex assembly;   regulation of RNA polymerase II transcriptional pre-initiation complex biosynthesis;   regulation of RNA polymerase II transcriptional preinitiation complex assembly
 related_synonym: regulation of RNA polymerase II transcriptional preinitiation complex formation


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negative regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:8006019) RGD PMID:8006019 NCBI chr12:11,009,236...11,015,941
Ensembl chr16:39,039,050...39,041,327
Ensembl chr12:39,039,050...39,041,327 		JBrowse link
G Thra thyroid hormone receptor alpha involved_in ISO
IEA 		(PMID:8524305)
GO_REF:0000107 		RGD
Ensembl		 PMID:8524305 GO_REF:0000107 NCBI chr10:84,198,141...84,225,659
Ensembl chr10:84,197,011...84,225,657 		JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor acts_upstream_of_or_within ISO (PMID:8215422) RGD PMID:8215422 NCBI chr 6:57,961,423...57,998,901
Ensembl chr 6:57,961,423...57,998,901 		JBrowse link
G Cand1 cullin-associated and neddylation-dissociated 1 involved_in IDA PMID:10567521 UniProt PMID:10567521 RGD:8553447 NCBI chr 7:56,566,765...56,604,653
Ensembl chr 7:56,551,394...56,604,655 		JBrowse link
G Creb1 cAMP responsive element binding protein 1 IMP RGD PMID:16891311 RGD:1625706 NCBI chr 9:73,397,333...73,466,339
Ensembl chr 9:73,397,306...73,466,339 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158690 (PMID:21245044) RGD PMID:21245044 NCBI chr14:90,468,696...90,556,522
Ensembl chr14:90,469,172...90,557,574 		JBrowse link
G Tp53 tumor protein p53 involved_in ISO
IEA 		(PMID:24289924)
GO_REF:0000107 		RGD
Ensembl		 PMID:24289924 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,798,851...54,810,299 		JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:19056892) 		Ensembl
RGD		 PMID:19056892 GO_REF:0000107 NCBI chr 7:131,801,046...131,806,850
Ensembl chr 7:131,801,046...131,806,850 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    regulation of biological process 12936
      regulation of cellular process 12518
        regulation of cellular component organization 2735
          regulation of protein-containing complex assembly 464
            regulation of RNA polymerase II transcription preinitiation complex assembly 8
              negative regulation of RNA polymerase II transcription preinitiation complex assembly 2
              positive regulation of RNA polymerase II transcription preinitiation complex assembly 6
Path 2
Term Annotations click to browse term
  biological_process 19315
    cellular process 18484
      metabolic process 11533
        primary metabolic process 10162
          nucleobase-containing compound metabolic process 5642
            nucleic acid metabolic process 5071
              RNA metabolic process 4482
                RNA biosynthetic process 4195
                  DNA-templated transcription 3375
                    DNA-templated transcription initiation 210
                      transcription initiation at RNA polymerase II promoter 167
                        RNA polymerase II preinitiation complex assembly 34
                          regulation of RNA polymerase II transcription preinitiation complex assembly 8
                            negative regulation of RNA polymerase II transcription preinitiation complex assembly 2
                            positive regulation of RNA polymerase II transcription preinitiation complex assembly 6
paths to the root