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ONTOLOGY REPORT - ANNOTATIONS


Term:farnesyl diphosphate metabolic process
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Accession:GO:0045338 term browser browse the term
Definition:The chemical reactions and pathways involving farnesyl diphosphate, an intermediate in carotenoid, sesquiterpene, squalene and sterol biosynthesis, as well as a substrate in protein farnesylation.
Synonyms:exact_synonym: farnesyl diphosphate metabolism



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farnesyl diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fdft1 farnesyl diphosphate farnesyl transferase 1 involved_in IMP
IBA
PMID:21873635 RGD
GO_Central
PMID:16440058 PMID:21873635 RGD:1626611, RGD:13792537 NCBI chr15:37,412,143...37,440,198
Ensembl chr15:37,412,146...37,440,287
JBrowse link
farnesyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fdps farnesyl diphosphate synthase involved_in IDA
IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt
RGD
PMID:8188698 PMID:21873635 GO_REF:0000041, RGD:2316305, RGD:13792537 NCBI chr 2:174,497,402...174,507,031
Ensembl chr 2:174,486,665...174,507,776
JBrowse link
G Ggps1 geranylgeranyl diphosphate synthase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr17:51,263,262...51,282,471
Ensembl chr17:51,263,263...51,276,220
JBrowse link
farnesyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:51,649,368...51,667,100
Ensembl chr 2:51,649,497...51,667,100
JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:185,875,609...185,903,505
Ensembl chr 2:185,875,616...185,902,130
JBrowse link
farnesyl diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plpp6 phospholipid phosphatase 6 involved_in ISO
ISS
(PMID:20110354)
GO_REF:0000024
RGD
UniProt
PMID:20110354 GO_REF:0000024 NCBI chr 1:226,679,100...226,681,952
Ensembl chr 1:226,679,100...226,681,949
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    cellular process 18637
      cellular metabolic process 10922
        cellular lipid metabolic process 1044
          phospholipid metabolic process 386
            farnesyl diphosphate metabolic process 6
              farnesyl diphosphate biosynthetic process + 4
              farnesyl diphosphate catabolic process 1
Path 2
Term Annotations click to browse term
  biological_process 19834
    metabolic process 12042
      primary metabolic process 10740
        lipid metabolic process 1418
          cellular lipid metabolic process 1044
            isoprenoid metabolic process 122
              terpenoid metabolic process 94
                farnesyl diphosphate metabolic process 6
                  farnesyl diphosphate biosynthetic process + 4
                  farnesyl diphosphate catabolic process 1
paths to the root