Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:carnitine biosynthetic process
go back to main search page
Accession:GO:0045329 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane.
Synonyms:exact_synonym: carnitine anabolism;   carnitine biosynthesis;   carnitine formation;   carnitine synthesis;   vitamin Bt biosynthesis;   vitamin Bt biosynthetic process

show annotations for term's descendants           Sort by:
 
carnitine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-Coenzyme A dehydrogenase, medium chain involved_in ISO (PMID:16972171) MGI
BHF-UCL		 PMID:16972171 GO_REF:0000096 MGI:4834177 NCBI chr 3:153,922,353...153,944,643
Ensembl chr 3:153,922,357...153,944,632 		JBrowse link
G Bbox1 butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase) involved_in IBA
ISO		 (MGI:6201960|PMID:21873635)
(PMID:20599753), (PMID:9753662)		 GO_Central
UniProt
MGI		 PMID:9753662 PMID:20599753 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 2:110,264,056...110,314,813
Ensembl chr 2:110,262,697...110,314,560 		JBrowse link
G Tmlhe trimethyllysine hydroxylase, epsilon involved_in IBA
IDA
ISO		 (MGI:6201960|PMID:21873635)
(MGI:2183690|PMID:12121276)
(PMID:23092983)
(PMID:15754339)		 GO_Central
MGI
UniProt
BHF-UCL		 PMID:12121276 PMID:15754339 PMID:21873635 PMID:23092983 GO_REF:0000096 MGI:2183690 MGI:4834177 MGI:6201960
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23334
    metabolic process 11117
      cellular metabolic process 10049
        cellular modified amino acid metabolic process 175
          amino-acid betaine metabolic process 17
            amino-acid betaine biosynthetic process 4
              carnitine biosynthetic process 3
Path 2
Term Annotations click to browse term
  biological_process 23334
    metabolic process 11117
      organic substance metabolic process 10682
        organonitrogen compound metabolic process 6073
          organonitrogen compound biosynthetic process 1510
            cellular modified amino acid biosynthetic process 40
              amino-acid betaine biosynthetic process 4
                carnitine biosynthetic process 3
paths to the root