Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:carnitine biosynthetic process
go back to main search page
Accession:GO:0045329 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane.
Synonyms:exact_synonym: carnitine anabolism;   carnitine biosynthesis;   carnitine formation;   carnitine synthesis;   vitamin Bt biosynthesis;   vitamin Bt biosynthetic process


show annotations for term's descendants           Sort by:
 
carnitine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACADM acyl-CoA dehydrogenase medium chain involved_in IMP (PMID:16972171) BHF-UCL PMID:16972171 NCBI chr 1:75,724,709...75,763,679
Ensembl chr 1:75,724,347...75,787,575
JBrowse link
G ALDH9A1 aldehyde dehydrogenase 9 family member A1 involved_in IEA
TAS
UniProt
Reactome
GO_REF:0000041 Reactome:R-HSA-71262 NCBI chr 1:165,662,212...165,698,663
Ensembl chr 1:165,662,216...165,698,863
JBrowse link
G BBOX1 gamma-butyrobetaine hydroxylase 1 involved_in IDA
TAS
IEA
IBA
(PMID:20599753), (PMID:9753662)
(PMID:21873635)
UniProt
Reactome
GO_Central
PMID:9753662 PMID:20599753 PMID:21873635 GO_REF:0000041 Reactome:R-HSA-71262 NCBI chr11:27,040,705...27,127,809
Ensembl chr11:27,040,725...27,127,809
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 involved_in TAS Reactome Reactome:R-HSA-71262 NCBI chr17:18,327,873...18,363,560
Ensembl chr17:18,327,860...18,363,563
JBrowse link
G TMLHE trimethyllysine hydroxylase, epsilon involved_in IMP
ISO
TAS
IBA
IEA
IDA
(PMID:23092983)
(MGI:2183690|PMID:12121276)
(PMID:21873635)
(PMID:15754339)
UniProt
MGI
Reactome
GO_Central
BHF-UCL
PMID:12121276 PMID:15754339 PMID:21873635 PMID:23092983 GO_REF:0000041 MGI:2183690 Reactome:R-HSA-71262 NCBI chr  X:155,489,011...155,612,952
Ensembl chr  X:155,489,011...155,719,098
Ensembl chr  X:155,489,011...155,719,098
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18684
    metabolic process 12221
      cellular metabolic process 11251
        cellular modified amino acid metabolic process 224
          amino-acid betaine metabolic process 20
            amino-acid betaine biosynthetic process 7
              carnitine biosynthetic process 5
Path 2
Term Annotations click to browse term
  biological_process 18684
    metabolic process 12221
      organic substance metabolic process 11728
        organonitrogen compound metabolic process 7062
          organonitrogen compound biosynthetic process 1838
            cellular modified amino acid biosynthetic process 51
              amino-acid betaine biosynthetic process 7
                carnitine biosynthetic process 5
paths to the root