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ONTOLOGY REPORT - ANNOTATIONS

Term:cell fate commitment
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Accession:GO:0045165 term browser browse the term
Definition:The cellular developmental process by which a cell establishes the intrinsic character of a cell or tissue region irreversibly committing it to a particular fate.
Comment:Note that this term was 'cell fate determination' but the term name was changed to better match its existing definition and the child term 'cell fate determination; GO:0001709' was also created.


show annotations for term's descendants           Sort by:
cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BARHL2 BarH like homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14998930) Ensembl
MGI		 PMID:14998930 GO_REF:0000107 NCBI chr 6:57,971,077...57,977,197
Ensembl chr 6:57,971,018...57,977,211 		JBrowse link
G BMP2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12421925) Ensembl
MGI		 PMID:12421925 GO_REF:0000107 NCBI chr24:15,199,667...15,211,509
Ensembl chr24:15,200,291...15,212,217 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12421925) Ensembl
MGI		 PMID:12421925 GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
G CASP3 caspase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15068794) Ensembl
MGI		 PMID:15068794 GO_REF:0000107 NCBI chr16:45,920,074...45,940,507
Ensembl chr16:45,920,071...45,940,505 		JBrowse link
G ERBB4 erb-b2 receptor tyrosine kinase 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12399441) Ensembl
MGI		 PMID:12399441 GO_REF:0000107 NCBI chr37:19,029,647...20,134,576
Ensembl chr37:19,037,217...20,134,426 		JBrowse link
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20022960) Ensembl
MGI		 PMID:20022960 GO_REF:0000107 NCBI chr13:17,172,497...17,457,084
Ensembl chr13:17,172,705...17,456,469 		JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15817220)
(PMID:16018995)		 Ensembl
MGI		 PMID:15817220 PMID:16018995 GO_REF:0000107 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653 		JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15809037) Ensembl
MGI		 PMID:15809037 GO_REF:0000107 NCBI chr28:14,362,407...14,367,109
Ensembl chr28:14,362,109...14,367,468 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 (PMID:16989802)
(PMID:15509736)		 UniProt
MGI		 PMID:15509736 PMID:16989802 GO_REF:0000024 NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621 		JBrowse link
G GAP43 growth associated protein 43 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15234344) Ensembl
MGI		 PMID:15234344 GO_REF:0000107 NCBI chr33:19,668,491...19,770,509
Ensembl chr33:19,656,835...19,770,408 		JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504941)
(PMID:11456441)		 MGI PMID:11456441 PMID:17504941 NCBI chr 1:72,927,346...72,930,119
Ensembl chr 1:72,927,670...72,928,827 		JBrowse link
G GATA1 GATA binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:41,991,321...41,998,319
Ensembl chr  X:41,971,582...41,998,303 		JBrowse link
G GATA2 GATA binding protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:2,472,251...2,488,380
Ensembl chr20:2,473,912...2,480,991 		JBrowse link
G GATA3 GATA binding protein 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:28,068,143...28,098,445
Ensembl chr 2:28,069,051...28,087,760 		JBrowse link
G GATA4 GATA binding protein 4 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr25:26,126,172...26,211,474
Ensembl chr25:26,127,853...26,182,989 		JBrowse link
G GATA5 GATA binding protein 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:46,417,404...46,427,617
Ensembl chr24:46,417,391...46,429,858 		JBrowse link
G GATA6 GATA binding protein 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:65,932,114...65,962,574 JBrowse link
G GDF7 growth differentiation factor 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15883363) Ensembl
MGI		 PMID:15883363 GO_REF:0000107 NCBI chr17:15,627,739...15,636,513 JBrowse link
G GFI1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within ISO (PMID:16230531) MGI PMID:16230531 NCBI chr 6:56,473,032...56,484,422
Ensembl chr 6:56,256,305...56,484,422 		JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10952889) Ensembl
MGI		 PMID:10952889 GO_REF:0000107
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19154718) Ensembl
MGI		 PMID:19154718 GO_REF:0000107 NCBI chr 1:64,630,656...64,646,546 JBrowse link
G HOXA2 homeobox A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7903600)
(PMID:7903601)		 Ensembl
MGI		 PMID:7903600 PMID:7903601 GO_REF:0000107 NCBI chr14:40,273,992...40,276,975
Ensembl chr14:40,274,469...40,276,239 		JBrowse link
G KDM6B lysine demethylase 6B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18716661) Ensembl
MGI		 PMID:18716661 GO_REF:0000107 NCBI chr 5:32,689,000...32,711,026
Ensembl chr 5:32,696,211...32,710,666 		JBrowse link
G KDR kinase insert domain receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12569129) Ensembl
MGI		 PMID:12569129 GO_REF:0000107 NCBI chr13:47,442,861...47,484,574
Ensembl chr13:47,442,764...47,485,042 		JBrowse link
G MEF2C myocyte enhancer factor 2C acts_upstream_of_or_within ISO (PMID:19169261) MGI PMID:19169261 NCBI chr 3:19,778,997...19,948,203
Ensembl chr 3:19,779,007...19,943,852 		JBrowse link
G MITF melanocyte inducing transcription factor acts_upstream_of_or_within ISO (PMID:15576400) MGI PMID:15576400 NCBI chr20:21,772,147...21,873,545
Ensembl chr20:21,612,927...21,870,578 		JBrowse link
G NEUROD1 neuronal differentiation 1 acts_upstream_of_or_within ISO (PMID:11861467) MGI PMID:11861467 NCBI chr36:24,853,591...24,857,886 JBrowse link
G NEUROD4 neuronal differentiation 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11032813) Ensembl
MGI		 PMID:11032813 GO_REF:0000107 NCBI chr27:384,809...396,731
Ensembl chr27:389,095...390,090 		JBrowse link
G NEUROG1 neurogenin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15229646) Ensembl
MGI		 PMID:15229646 GO_REF:0000107 NCBI chr11:23,563,128...23,564,819
Ensembl chr11:23,563,803...23,564,543 		JBrowse link
G NEUROG2 neurogenin 2 acts_upstream_of_or_within ISO (PMID:15229646) MGI PMID:15229646 NCBI chr32:32,310,939...32,313,492
Ensembl chr32:32,312,097...32,312,915 		JBrowse link
G NKX6-2 NK6 homeobox 2 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:11567614) Ensembl
MGI		 PMID:11567614 GO_REF:0000107 NCBI chr28:40,568,948...40,570,240
Ensembl chr28:40,569,093...40,570,793 		JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:12842913) MGI PMID:12842913 NCBI chr 4:21,366,828...21,374,623
Ensembl chr 4:21,367,583...21,375,151 		JBrowse link
G NR2E1 nuclear receptor subfamily 2 group E member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15229646) Ensembl
MGI		 PMID:15229646 GO_REF:0000107 NCBI chr12:65,209,177...65,230,274
Ensembl chr12:65,209,542...65,228,998 		JBrowse link
G ONECUT1 one cut homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16103213) Ensembl
MGI		 PMID:16103213 GO_REF:0000107 NCBI chr30:18,384,533...18,425,940
Ensembl chr30:18,387,130...18,425,497 		JBrowse link
G ONECUT2 one cut homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16103213) Ensembl
MGI		 PMID:16103213 GO_REF:0000107 NCBI chr 1:18,428,112...18,486,047
Ensembl chr 1:18,440,172...18,486,048 		JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:15105370) MGI PMID:15105370 NCBI chr 8:32,435,169...32,445,093
Ensembl chr 8:32,435,863...32,445,446 		JBrowse link
G PAX6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15229646)
(PMID:15878992)		 Ensembl
MGI		 PMID:15229646 PMID:15878992 GO_REF:0000107
G PML PML nuclear body scaffold involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19261859) Ensembl
MGI		 PMID:19261859 GO_REF:0000107 NCBI chr30:37,232,337...37,278,434
Ensembl chr30:37,232,306...37,277,741 		JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:9814708) MGI PMID:9814708
G PPARG peroxisome proliferator activated receptor gamma acts_upstream_of_or_within ISO (PMID:15687259)
(PMID:24703703)		 MGI PMID:15687259 PMID:24703703 NCBI chr20:6,134,618...6,265,481
Ensembl chr20:6,050,357...6,207,981 		JBrowse link
G PRDM1 PR/SET domain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15750184)
(PMID:15937476)		 UniProt
MGI
TreeGrafter
Ensembl		 PMID:15750184 PMID:15937476 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr12:63,454,242...63,495,278
Ensembl chr12:63,470,974...63,495,579 		JBrowse link
G PTF1A pancreas associated transcription factor 1a involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17938243)
(PMID:12185368)		 Ensembl
MGI		 PMID:12185368 PMID:17938243 GO_REF:0000107 NCBI chr 2:10,069,594...10,071,360
Ensembl chr 2:10,069,581...10,071,336 		JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17015435) Ensembl
MGI		 PMID:17015435 GO_REF:0000107 NCBI chr 3:84,060,417...84,286,008
Ensembl chr 3:84,064,440...84,286,360 		JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:20660756) MGI PMID:20660756 NCBI chr 1:95,209,122...95,280,956
Ensembl chr 1:95,088,745...95,280,151 		JBrowse link
G SFT2D2 SFT2 domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:30,258,748...30,281,371 JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17504941) Ensembl
MGI
UniProt		 PMID:17504941 GO_REF:0000107 GO_REF:0000117 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903 		JBrowse link
G SMAD2 SMAD family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12842913) Ensembl
MGI		 PMID:12842913 GO_REF:0000107 NCBI chr 7:43,696,883...43,778,063
Ensembl chr 7:43,700,445...43,769,983 		JBrowse link
G SOSTDC1 sclerostin domain containing 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22509524) Ensembl
MGI		 PMID:22509524 GO_REF:0000107 NCBI chr14:31,035,759...31,079,139
Ensembl chr14:31,022,766...31,026,737
Ensembl chr14:31,022,766...31,026,737 		JBrowse link
G SOX13 SRY-box transcription factor 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr38:702,974...721,340
Ensembl chr38:523,481...720,195 		JBrowse link
G SOX2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:18374910) MGI PMID:18374910 NCBI chr34:14,853,000...14,855,153 JBrowse link
G SOX5 SRY-box transcription factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15634692) TreeGrafter
MGI		 PMID:15634692 GO_REF:0000118 NCBI chr27:22,857,661...23,855,709
Ensembl chr27:23,452,985...23,851,380 		JBrowse link
G SOX6 SRY-box transcription factor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15634692) TreeGrafter
MGI		 PMID:15634692 GO_REF:0000118 NCBI chr21:38,737,072...39,320,257
Ensembl chr21:38,737,247...39,216,549 		JBrowse link
G SOX8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15893981) Ensembl
MGI		 PMID:15893981 GO_REF:0000107 NCBI chr 6:39,667,941...39,672,716
Ensembl chr 6:39,668,232...39,672,638 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15893981) Ensembl
MGI		 PMID:15893981 GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
G SPDEF SAM pointed domain containing ETS transcription factor involved_in
acts_upstream_of		 IEA
ISO		 (PMID:19759516) Ensembl
MGI		 PMID:19759516 GO_REF:0000107 NCBI chr12:3,814,806...3,831,724
Ensembl chr12:3,815,300...3,831,477 		JBrowse link
G SPRY2 sprouty RTK signaling antagonist 2 acts_upstream_of_or_within ISO (PMID:15809037) MGI PMID:15809037 NCBI chr22:33,366,139...33,371,102
Ensembl chr22:33,366,931...33,367,878 		JBrowse link
G TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12569129) Ensembl
MGI		 PMID:12569129 GO_REF:0000107 NCBI chr15:13,446,752...13,462,038
Ensembl chr15:13,449,481...13,462,047 		JBrowse link
G TBX19 T-box transcription factor 19 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12651892) Ensembl
MGI		 PMID:12651892 GO_REF:0000107 NCBI chr 7:30,198,912...30,248,410
Ensembl chr 7:30,185,850...30,365,512 		JBrowse link
G TEAD4 TEA domain transcription factor 4 acts_upstream_of_or_within ISO (PMID:22529382) MGI PMID:22529382 NCBI chr27:41,744,100...41,783,223
Ensembl chr27:41,748,871...41,803,556 		JBrowse link
G TGFB1I1 transforming growth factor beta 1 induced transcript 1 acts_upstream_of_or_within ISO (PMID:15687259) MGI PMID:15687259 NCBI chr 6:16,775,438...16,781,695
Ensembl chr 6:16,775,836...16,780,935 		JBrowse link
G TIPRL TOR signaling pathway regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:30,291,330...30,329,317
Ensembl chr 7:30,185,850...30,365,512 		JBrowse link
G TLX1 T cell leukemia homeobox 1 acts_upstream_of_or_within ISO (PMID:11356032) MGI PMID:11356032 NCBI chr28:13,807,428...13,813,875
Ensembl chr28:13,807,720...13,813,849 		JBrowse link
G VSX2 visual system homeobox 2 acts_upstream_of_or_within ISO (PMID:15576400) MGI PMID:15576400 NCBI chr 8:47,455,337...47,473,786
Ensembl chr 8:47,455,340...47,473,684 		JBrowse link
G WNT1 Wnt family member 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr27:5,588,151...5,592,254
Ensembl chr27:5,574,940...5,592,060 		JBrowse link
G WNT10A Wnt family member 10A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr37:25,463,064...25,475,407
Ensembl chr37:25,462,748...25,474,764 		JBrowse link
G WNT10B Wnt family member 10B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr27:5,599,905...5,605,506
Ensembl chr27:5,601,089...5,605,501 		JBrowse link
G WNT11 Wnt family member 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:22,442,496...22,463,040
Ensembl chr21:22,446,051...22,463,173 		JBrowse link
G WNT16 Wnt family member 16 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:59,388,034...59,404,812
Ensembl chr14:59,387,846...59,396,622 		JBrowse link
G WNT2 Wnt family member 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:56,123,735...56,172,113
Ensembl chr14:56,129,248...56,172,069 		JBrowse link
G WNT2B Wnt family member 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:63,034,719...63,054,369
Ensembl chr17:63,035,883...63,047,956 		JBrowse link
G WNT3 Wnt family member 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:10,073,019...10,124,454
Ensembl chr 9:10,077,567...10,124,508 		JBrowse link
G WNT3A Wnt family member 3A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:864,393...899,698
Ensembl chr14:863,424...896,412 		JBrowse link
G WNT4 Wnt family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18351662) Ensembl
MGI
TreeGrafter		 PMID:18351662 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:77,112,045...77,129,702
Ensembl chr 2:77,101,300...77,127,111 		JBrowse link
G WNT5A Wnt family member 5A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673 		JBrowse link
G WNT5B Wnt family member 5B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr27:43,662,482...43,679,713
Ensembl chr27:43,620,284...43,677,078 		JBrowse link
G WNT6 Wnt family member 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr37:25,452,875...25,457,437
Ensembl chr37:25,453,905...25,456,654 		JBrowse link
G WNT7A Wnt family member 7A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436 		JBrowse link
G WNT7B Wnt family member 7B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:20,160,916...20,208,786
Ensembl chr10:20,160,206...20,243,160 		JBrowse link
G WNT8A Wnt family member 8A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:25,707,058...25,752,724
Ensembl chr11:25,744,780...25,749,748 		JBrowse link
G WNT8B Wnt family member 8B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr28:13,187,927...13,210,398
Ensembl chr28:13,188,142...13,210,398 		JBrowse link
G WNT9A Wnt family member 9A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:946,843...959,289
Ensembl chr14:953,244...959,295 		JBrowse link
G WNT9B Wnt family member 9B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:10,157,607...10,172,664
Ensembl chr 9:10,149,842...10,172,654 		JBrowse link
G ZNF683 zinc finger protein 683 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:73,656,842...73,667,621
Ensembl chr 2:73,658,525...73,667,605 		JBrowse link
activation of prostate induction by androgen receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AR androgen receptor acts_upstream_of_or_within ISO (PMID:17317769) MGI PMID:17317769 NCBI chr24:34,713,390...34,731,461
NCBI chr  X:51,969,785...52,167,450
Ensembl chr  X:51,969,785...52,151,912 		JBrowse link
alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RHOA ras homolog family member A involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:39,824,552...39,888,089
Ensembl chr20:39,824,575...39,887,215 		JBrowse link
arterial endothelial cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RBPJ recombination signal binding protein for immunoglobulin kappa J region involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:84,060,417...84,286,008
Ensembl chr 3:84,064,440...84,286,360 		JBrowse link
astrocyte fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GCM1 glial cells missing transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14573516) Ensembl
MGI		 PMID:14573516 GO_REF:0000107 NCBI chr12:20,623,593...20,642,861
Ensembl chr12:20,623,717...20,640,193 		JBrowse link
G SOX8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19490914) Ensembl
MGI		 PMID:19490914 GO_REF:0000107 NCBI chr 6:39,667,941...39,672,716
Ensembl chr 6:39,668,232...39,672,638 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19490914) Ensembl
MGI		 PMID:19490914 GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
G TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16292311) Ensembl
MGI		 PMID:16292311 GO_REF:0000107 NCBI chr15:13,446,752...13,462,038
Ensembl chr15:13,449,481...13,462,047 		JBrowse link
asymmetric neuroblast division term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARHGEF2 Rho/Rac guanine nucleotide exchange factor 2 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:41,835,322...41,850,488
Ensembl chr 7:41,812,353...41,850,488 		JBrowse link
G SOX5 SRY-box transcription factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:22,857,661...23,855,709
Ensembl chr27:23,452,985...23,851,380 		JBrowse link
G TEAD3 TEA domain transcription factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:4,610,663...4,627,817
Ensembl chr12:4,611,144...4,632,888 		JBrowse link
asymmetric protein localization involved in cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT7A Wnt family member 7A acts_upstream_of_or_within ISO (PMID:19497282) MGI PMID:19497282 NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436 		JBrowse link
atrioventricular node cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKX2-5 NK2 homeobox 5 acts_upstream_of_or_within ISO (PMID:15109497) MGI PMID:15109497 NCBI chr 4:39,240,755...39,254,585
Ensembl chr 4:39,244,286...39,247,592 		JBrowse link
G TBX5 T-box transcription factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:11,462,541...11,549,699
Ensembl chr26:11,463,653...11,506,446 		JBrowse link
auditory receptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G JAG2 jagged canonical Notch ligand 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:72,535,539...72,553,531
Ensembl chr 8:72,535,107...72,550,322 		JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19154718) Ensembl
MGI		 PMID:19154718 GO_REF:0000107 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277 		JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19154718) Ensembl
MGI		 PMID:19154718 GO_REF:0000107 NCBI chr 3:84,060,417...84,286,008
Ensembl chr 3:84,064,440...84,286,360 		JBrowse link
auditory receptor cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATOH1 atonal bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16407553) Ensembl
MGI		 PMID:16407553 GO_REF:0000107 NCBI chr32:16,807,217...16,809,294
Ensembl chr32:16,807,336...16,808,406 		JBrowse link
auditory receptor cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATOH1 atonal bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10364557) Ensembl
MGI		 PMID:10364557 GO_REF:0000107 NCBI chr32:16,807,217...16,809,294
Ensembl chr32:16,807,336...16,808,406 		JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:14511481) MGI PMID:14511481 NCBI chr 4:21,366,828...21,374,623
Ensembl chr 4:21,367,583...21,375,151 		JBrowse link
B cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8788039) Ensembl
MGI		 PMID:8788039 GO_REF:0000107 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO (PMID:8788039) MGI PMID:8788039 NCBI chr29:24,904...243,926
Ensembl chr29:35,007...243,895 		JBrowse link
G RAG2 recombination activating 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8788039) Ensembl
MGI		 PMID:8788039 GO_REF:0000107 NCBI chr18:31,614,143...31,621,489
Ensembl chr18:31,618,481...31,620,064 		JBrowse link
G TCF3 transcription factor 3 involved_in ISO (PMID:15030778) UniProt PMID:15030778 NCBI chr20:57,255,091...57,284,223
Ensembl chr20:57,254,384...57,283,981 		JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8788039) Ensembl
MGI		 PMID:8788039 GO_REF:0000107 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109 		JBrowse link
B-1 B cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLAMF8 SLAM family member 8 involved_in ISO (MGI:6215454|PMID:11313408) UniProt PMID:11313408 MGI:6215454 NCBI chr38:22,299,455...22,307,090
Ensembl chr38:22,300,128...22,307,096 		JBrowse link
blood vessel endothelial cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RBPJ recombination signal binding protein for immunoglobulin kappa J region involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:84,060,417...84,286,008
Ensembl chr 3:84,064,440...84,286,360 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18582859) Ensembl
MGI		 PMID:18582859 GO_REF:0000107 NCBI chr37:25,616,942...25,622,989 JBrowse link
cardiac cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ISL1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19620969) Ensembl
MGI		 PMID:19620969 GO_REF:0000107 NCBI chr 4:63,638,009...63,648,492
Ensembl chr 4:63,637,443...63,648,183 		JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:52,738,333...52,739,962
Ensembl chr 3:52,738,366...52,739,755 		JBrowse link
G POU5F1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317
G SOX17 SRY-box transcription factor 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:5,979,092...5,981,504
Ensembl chr29:5,979,261...5,981,124 		JBrowse link
cardiac cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ITGB1 integrin subunit beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9004034) Ensembl
MGI		 PMID:9004034 GO_REF:0000107 NCBI chr 2:3,728,472...3,757,696
Ensembl chr 2:3,670,596...3,756,961 		JBrowse link
G TENM4 teneurin transmembrane protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17350578) Ensembl
MGI		 PMID:17350578 GO_REF:0000107 NCBI chr21:17,819,846...20,234,096
Ensembl chr21:19,732,991...20,230,305 		JBrowse link
cardiac muscle cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr36:3,743,257...3,818,659
Ensembl chr36:3,744,163...3,818,652 		JBrowse link
G TBX3 T-box transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18467625) Ensembl
MGI		 PMID:18467625 GO_REF:0000107 NCBI chr26:11,694,885...11,709,594
Ensembl chr26:11,696,565...11,708,918 		JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21554246) Ensembl
MGI		 PMID:21554246 GO_REF:0000107 NCBI chr14:864,393...899,698
Ensembl chr14:863,424...896,412 		JBrowse link
G WT1 WT1 transcription factor involved_in ISO (MGI:5285454|PMID:21654746) BHF-UCL PMID:21654746 MGI:5285454 NCBI chr18:35,099,660...35,148,767
Ensembl chr18:35,103,934...35,148,000 		JBrowse link
CD4-positive or CD8-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRAF B-Raf proto-oncogene, serine/threonine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18228248) Ensembl
MGI		 PMID:18228248 GO_REF:0000107 NCBI chr16:8,222,909...8,318,179
Ensembl chr16:8,222,907...8,317,906 		JBrowse link
G CYLD CYLD lysine 63 deubiquitinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16501569) Ensembl
MGI		 PMID:16501569 GO_REF:0000107 NCBI chr 2:64,561,684...64,628,829
Ensembl chr 2:64,562,503...64,628,175 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903 		JBrowse link
CD4-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTSL3 cathepsin L family member 3 involved_in ISO (MGI:2655909|PMID:9545226) UniProt PMID:9545226 MGI:2655909 NCBI chr 1:72,215,774...72,219,093 JBrowse link
G CTSV cathepsin V involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:69,937,550...69,943,316 JBrowse link
G TOX thymocyte selection associated high mobility group box involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:9,542,471...9,841,759
Ensembl chr29:9,544,561...9,842,034 		JBrowse link
CD4-positive, CD25-positive, alpha-beta regulatory T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TOX thymocyte selection associated high mobility group box involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:9,542,471...9,841,759
Ensembl chr29:9,544,561...9,842,034 		JBrowse link
CD8-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8170972) Ensembl
MGI		 PMID:8170972 GO_REF:0000107 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658 		JBrowse link
G TOX thymocyte selection associated high mobility group box involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:9,542,471...9,841,759
Ensembl chr29:9,544,561...9,842,034 		JBrowse link
cell fate commitment involved in formation of primary germ layer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POU5F1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317
cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BARHL2 BarH like homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12657654) Ensembl
MGI		 PMID:12657654 GO_REF:0000107 NCBI chr 6:57,971,077...57,977,197
Ensembl chr 6:57,971,018...57,977,211 		JBrowse link
G CHRDL1 chordin like 1 ISO RGD PMID:14684875 RGD:1299653 NCBI chr  X:83,816,131...83,936,497
Ensembl chr  X:83,817,880...83,936,949 		JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16574820) Ensembl
MGI		 PMID:16574820 GO_REF:0000107 NCBI chr17:50,633,397...50,653,882
Ensembl chr17:50,633,413...50,653,894 		JBrowse link
G EBF2 EBF transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23499423) Ensembl
MGI		 PMID:23499423 GO_REF:0000107 NCBI chr25:31,478,361...31,671,018
Ensembl chr25:31,478,349...31,668,555 		JBrowse link
G GATA2 GATA binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10367888) Ensembl
MGI		 PMID:10367888 GO_REF:0000107 NCBI chr20:2,472,251...2,488,380
Ensembl chr20:2,473,912...2,480,991 		JBrowse link
G GATA3 GATA binding protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12923059) Ensembl
MGI		 PMID:12923059 GO_REF:0000107 NCBI chr 2:28,068,143...28,098,445
Ensembl chr 2:28,069,051...28,087,760 		JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:11425898) Ensembl
MGI		 PMID:11425898 GO_REF:0000107
G HOXA2 homeobox A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16221728) Ensembl
MGI		 PMID:16221728 GO_REF:0000107 NCBI chr14:40,273,992...40,276,975
Ensembl chr14:40,274,469...40,276,239 		JBrowse link
G NKX6-3 NK6 homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18347062) Ensembl
MGI		 PMID:18347062 GO_REF:0000107 NCBI chr16:23,966,621...23,972,714
Ensembl chr16:23,968,783...23,973,803 		JBrowse link
G NOTCH2 notch receptor 2 ISO RGD PMID:1295745 RGD:69906 NCBI chr17:56,854,825...57,020,157
Ensembl chr17:56,860,429...57,020,857 		JBrowse link
G PAX2 paired box 2 acts_upstream_of_or_within ISO (PMID:12756174) MGI PMID:12756174 NCBI chr28:13,442,894...13,519,853
Ensembl chr28:13,442,893...13,532,094 		JBrowse link
G PAX6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12756174) Ensembl
MGI		 PMID:12756174 GO_REF:0000107
G PTCH1 patched 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24492243) Ensembl
MGI		 PMID:24492243 GO_REF:0000107 NCBI chr 1:71,246,750...71,309,036
Ensembl chr 1:71,238,195...71,305,662 		JBrowse link
G PTCH2 patched 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24492243) Ensembl
MGI		 PMID:24492243 GO_REF:0000107 NCBI chr15:15,488,357...15,503,748
Ensembl chr15:15,487,639...15,503,234 		JBrowse link
cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APC APC regulator of WNT signaling pathway involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:252,052...380,506
Ensembl chr 3:253,081...322,993 		JBrowse link
G APC2 APC regulator of WNT signaling pathway 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:57,380,472...57,395,249
Ensembl chr20:57,380,460...57,395,226 		JBrowse link
G CDON cell adhesion associated, oncogene regulated involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16647304) Ensembl
MGI		 PMID:16647304 GO_REF:0000107 NCBI chr 5:8,439,606...8,536,088
Ensembl chr 5:8,446,346...8,533,426 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15866163) Ensembl
MGI		 PMID:15866163 GO_REF:0000107 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927 		JBrowse link
G DHH desert hedgehog signaling molecule involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr27:5,490,122...5,497,144
Ensembl chr27:5,490,441...5,494,636 		JBrowse link
G FKBP8 FKBP prolyl isomerase 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18590716) Ensembl
MGI		 PMID:18590716 GO_REF:0000107 NCBI chr20:44,494,856...44,504,084
Ensembl chr20:44,489,219...44,598,497 		JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:18076286) MGI PMID:18076286 NCBI chr24:1,010,370...1,013,791
Ensembl chr24:1,010,651...1,013,072 		JBrowse link
G GFI1 growth factor independent 1 transcriptional repressor acts_upstream_of ISO (PMID:16230531) MGI PMID:16230531 NCBI chr 6:56,473,032...56,484,422
Ensembl chr 6:56,256,305...56,484,422 		JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18582859) Ensembl
MGI
TreeGrafter		 PMID:18582859 GO_REF:0000107 GO_REF:0000118 NCBI chr37:25,616,942...25,622,989 JBrowse link
G MGA MAX dimerization protein MGA involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr30:8,633,122...8,805,822
Ensembl chr30:8,711,091...8,802,324 		JBrowse link
G POU1F1 POU class 1 homeobox 1 acts_upstream_of_or_within ISO (PMID:10367888) MGI PMID:10367888 NCBI chr31:769,454...788,761
Ensembl chr31:769,487...787,626 		JBrowse link
G PRDM14 PR/SET domain 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18622394) Ensembl
MGI		 PMID:18622394 GO_REF:0000107 NCBI chr29:19,203,798...19,220,149
Ensembl chr29:19,203,807...19,220,518 		JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15525534) Ensembl
MGI		 PMID:15525534 GO_REF:0000107 NCBI chr 8:46,495,551...46,569,532
Ensembl chr 8:46,495,624...46,569,532 		JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (PMID:15525534) MGI PMID:15525534 NCBI chr 7:38,147,157...38,163,023
Ensembl chr 7:38,147,173...38,166,722 		JBrowse link
G SFT2D2 SFT2 domain containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:30,258,748...30,281,371 JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16647304)
(PMID:12231626)
(PMID:18076286)		 Ensembl
MGI
TreeGrafter		 PMID:12231626 PMID:16647304 PMID:18076286 GO_REF:0000107 GO_REF:0000118 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18590716) Ensembl
MGI		 PMID:18590716 GO_REF:0000107 NCBI chr14:7,518,871...7,527,703
Ensembl chr14:7,518,856...7,528,033 		JBrowse link
G SOX2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:12514105) MGI PMID:12514105 NCBI chr34:14,853,000...14,855,153 JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
G TBR1 T-box brain transcription factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr36:6,989,644...6,997,916
Ensembl chr36:6,989,488...6,997,900 		JBrowse link
G TBX1 T-box transcription factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:29,529,071...29,533,240
Ensembl chr26:29,528,878...29,532,784 		JBrowse link
G TBX10 T-box transcription factor 10 involved_in IEA TreeGrafter GO_REF:0000118
G TBX15 T-box transcription factor 15 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:56,079,739...56,190,417
Ensembl chr17:56,081,411...56,204,192 		JBrowse link
G TBX18 T-box transcription factor 18 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:44,901,076...44,929,730
Ensembl chr12:44,873,119...44,929,205 		JBrowse link
G TBX19 T-box transcription factor 19 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:30,198,912...30,248,410
Ensembl chr 7:30,185,850...30,365,512 		JBrowse link
G TBX2 T-box transcription factor 2 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 9:35,237,323...35,245,066
Ensembl chr 9:35,235,649...35,245,736 		JBrowse link
G TBX20 T-box transcription factor 20 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:46,891,706...46,946,899
Ensembl chr14:46,896,228...46,947,507 		JBrowse link
G TBX21 T-box transcription factor 21 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:24,077,752...24,086,560
Ensembl chr 9:24,077,761...24,086,261 		JBrowse link
G TBX3 T-box transcription factor 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:11,694,885...11,709,594
Ensembl chr26:11,696,565...11,708,918 		JBrowse link
G TBX4 T-box transcription factor 4 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 9:35,163,346...35,197,726
Ensembl chr 9:35,166,353...35,191,932 		JBrowse link
G TBX5 T-box transcription factor 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:11,462,541...11,549,699
Ensembl chr26:11,463,653...11,506,446 		JBrowse link
G TBX6 T-box transcription factor 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:18,093,201...18,098,592
Ensembl chr 6:18,093,189...18,097,636 		JBrowse link
G TBXT T-box transcription factor T involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:54,183,495...54,192,331
Ensembl chr 1:54,183,153...54,192,352 		JBrowse link
G TEAD4 TEA domain transcription factor 4 acts_upstream_of_or_within ISO (PMID:18083014) MGI PMID:18083014 NCBI chr27:41,744,100...41,783,223
Ensembl chr27:41,748,871...41,803,556 		JBrowse link
G TIPRL TOR signaling pathway regulator involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:30,291,330...30,329,317
Ensembl chr 7:30,185,850...30,365,512 		JBrowse link
cerebral cortex GABAergic interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLX1 distal-less homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17678855) Ensembl
MGI		 PMID:17678855 GO_REF:0000107 NCBI chr36:16,485,158...16,489,397
Ensembl chr36:16,484,859...16,487,886 		JBrowse link
G DLX2 distal-less homeobox 2 acts_upstream_of_or_within ISO (PMID:17678855) MGI PMID:17678855 NCBI chr36:16,499,009...16,502,365
Ensembl chr36:16,484,302...16,502,510 		JBrowse link
commitment of neuronal cell to specific neuron type in forebrain term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22991444) Ensembl
MGI		 PMID:22991444 GO_REF:0000107 NCBI chr15:41,694,021...41,696,933
Ensembl chr15:41,694,269...41,695,391 		JBrowse link
G BCL11B BCL11 transcription factor B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23144223) Ensembl
MGI		 PMID:23144223 GO_REF:0000107 NCBI chr 8:67,622,592...67,713,922
Ensembl chr 8:67,622,708...67,714,404 		JBrowse link
G FEZF2 FEZ family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21338885) Ensembl
MGI		 PMID:21338885 GO_REF:0000107 NCBI chr20:28,704,287...28,708,620
Ensembl chr20:28,703,623...28,708,282 		JBrowse link
G GATA2 GATA binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22991444) Ensembl
MGI		 PMID:22991444 GO_REF:0000107 NCBI chr20:2,472,251...2,488,380
Ensembl chr20:2,473,912...2,480,991 		JBrowse link
G PAX6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11124115) Ensembl
MGI		 PMID:11124115 GO_REF:0000107
G TBR1 T-box brain transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23144223) Ensembl
MGI
TreeGrafter		 PMID:23144223 GO_REF:0000107 GO_REF:0000118 NCBI chr36:6,989,644...6,997,916
Ensembl chr36:6,989,488...6,997,900 		JBrowse link
ectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELF5 E74 like ETS transcription factor 5 acts_upstream_of_or_within ISO (PMID:25446535) MGI PMID:25446535 NCBI chr18:33,342,962...33,376,012
Ensembl chr18:33,332,324...33,374,828 		JBrowse link
G ETS2 ETS proto-oncogene 2, transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25446535) Ensembl
MGI		 PMID:25446535 GO_REF:0000107 NCBI chr31:33,846,821...33,861,394
Ensembl chr31:33,839,010...33,860,330 		JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:10742100) MGI PMID:10742100
endocardial cushion cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr36:3,743,257...3,818,659
Ensembl chr36:3,744,163...3,818,652 		JBrowse link
endodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC73 cell division cycle 73 involved_in ISO (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chr38:5,826,209...5,937,930
Ensembl chr38:5,805,916...5,938,111 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12194849) Ensembl
MGI		 PMID:12194849 GO_REF:0000107 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927 		JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:33,915,804...33,949,597
Ensembl chr21:33,915,772...33,949,103 		JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:17,614,502...17,651,715
Ensembl chr30:17,598,076...17,651,290 		JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:113,828,219...113,832,747
Ensembl chr 1:113,828,007...113,832,735 		JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:10742100) MGI PMID:10742100
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:8,468,001...8,524,712
Ensembl chr30:8,467,761...8,522,874 		JBrowse link
endodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA6 GATA binding protein 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20308546) Ensembl
MGI		 PMID:20308546 GO_REF:0000107 NCBI chr 7:65,932,114...65,962,574 JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20308546) Ensembl
MGI		 PMID:20308546 GO_REF:0000107 NCBI chr29:5,979,092...5,981,504
Ensembl chr29:5,979,261...5,981,124 		JBrowse link
endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EOMES eomesodermin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21245162) TreeGrafter
MGI		 PMID:21245162 GO_REF:0000118 NCBI chr23:16,476,498...16,512,406
Ensembl chr23:16,506,032...16,511,527 		JBrowse link
G HNF1B HNF1 homeobox B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18635606) Ensembl
MGI		 PMID:18635606 GO_REF:0000107 NCBI chr 9:37,437,992...37,493,200
Ensembl chr 9:37,438,583...37,492,993 		JBrowse link
G NANOG Nanog homeobox acts_upstream_of_or_within ISO (PMID:20713518) MGI PMID:20713518 NCBI chr27:37,262,558...37,266,449 JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:20713518) MGI PMID:20713518
G SOX17 SRY-box transcription factor 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:5,979,092...5,981,504
Ensembl chr29:5,979,261...5,981,124 		JBrowse link
G SOX2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:21245162) MGI PMID:21245162 NCBI chr34:14,853,000...14,855,153 JBrowse link
endothelial cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXA13 homeobox A13 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18483557) Ensembl
MGI		 PMID:18483557 GO_REF:0000107 NCBI chr14:40,371,234...40,375,261
Ensembl chr14:40,373,059...40,375,980 		JBrowse link
endothelial tip cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLL1 delta like canonical Notch ligand 1 involved_in ISO (MGI:5466218|PMID:22282195) UniProt PMID:22282195 MGI:5466218 NCBI chr12:72,265,078...72,272,347
Ensembl chr12:72,265,682...72,272,348 		JBrowse link
G FLVCR2 FLVCR heme transporter 2 acts_upstream_of_or_within ISO (PMID:32369453) MGI PMID:32369453 NCBI chr 8:48,588,294...48,640,339
Ensembl chr 8:48,587,863...48,653,488 		JBrowse link
eosinophil fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA1 GATA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:41,991,321...41,998,319
Ensembl chr  X:41,971,582...41,998,303 		JBrowse link
G GATA2 GATA binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:2,472,251...2,488,380
Ensembl chr20:2,473,912...2,480,991 		JBrowse link
epidermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXI3 forkhead box I3 involved_in ISS UniProt GO_REF:0000024 NCBI chr17:38,032,479...38,036,424
Ensembl chr17:38,032,479...38,037,630 		JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15068794) Ensembl
MGI		 PMID:15068794 GO_REF:0000107 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277 		JBrowse link
G PTCH1 patched 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24492243) Ensembl
MGI		 PMID:24492243 GO_REF:0000107 NCBI chr 1:71,246,750...71,309,036
Ensembl chr 1:71,238,195...71,305,662 		JBrowse link
G PTCH2 patched 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24492243) Ensembl
MGI		 PMID:24492243 GO_REF:0000107 NCBI chr15:15,488,357...15,503,748
Ensembl chr15:15,487,639...15,503,234 		JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17079689) Ensembl
MGI		 PMID:17079689 GO_REF:0000107 NCBI chr 3:84,060,417...84,286,008
Ensembl chr 3:84,064,440...84,286,360 		JBrowse link
epithelial cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARX aristaless related homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22387004) Ensembl
MGI		 PMID:22387004 GO_REF:0000107 NCBI chr  X:20,545,346...20,556,206
Ensembl chr  X:20,545,346...20,556,206 		JBrowse link
G CHRD chordin involved_in ISO (PMID:11969257) MGI PMID:11969257 NCBI chr34:17,255,770...17,264,776
Ensembl chr34:17,255,562...17,271,713 		JBrowse link
G FGFR3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:19407216) MGI PMID:19407216 NCBI chr 3:62,309,128...62,318,932
Ensembl chr 3:62,303,756...62,323,896 		JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:16940177) MGI PMID:16940177 NCBI chr25:26,126,172...26,211,474
Ensembl chr25:26,127,853...26,182,989 		JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16107537) Ensembl
MGI		 PMID:16107537 GO_REF:0000107 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277 		JBrowse link
G SOSTDC1 sclerostin domain containing 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22509524) Ensembl
MGI		 PMID:22509524 GO_REF:0000107 NCBI chr14:31,035,759...31,079,139
Ensembl chr14:31,022,766...31,026,737
Ensembl chr14:31,022,766...31,026,737 		JBrowse link
G SPDEF SAM pointed domain containing ETS transcription factor involved_in
acts_upstream_of		 IEA
ISO		 (PMID:19759516) Ensembl
MGI		 PMID:19759516 GO_REF:0000107 NCBI chr12:3,814,806...3,831,724
Ensembl chr12:3,815,300...3,831,477 		JBrowse link
establishment of neuroblast polarity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DOCK7 dedicator of cytokinesis 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:47,435,209...47,653,312
Ensembl chr 5:47,462,224...47,653,163 		JBrowse link
G FGF13 fibroblast growth factor 13 involved_in
NOT|involved_in		 ISO (MGI:5431268|PMID:22726441) UniProt PMID:22726441 MGI:5431268 NCBI chr  X:108,658,113...109,156,096
Ensembl chr  X:108,658,941...109,156,594 		JBrowse link
G RAB10 RAB10, member RAS oncogene family involved_in ISS UniProt GO_REF:0000024 NCBI chr17:20,181,363...20,264,927
Ensembl chr17:20,181,363...20,264,927 		JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:14625556) MGI PMID:14625556 NCBI chr 8:32,435,169...32,445,093
Ensembl chr 8:32,435,863...32,445,446 		JBrowse link
forebrain neuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LHX6 LIM homeobox 6 acts_upstream_of_or_within ISO (PMID:18339674) MGI PMID:18339674 NCBI chr 9:60,348,529...60,374,037
Ensembl chr 9:60,348,335...60,374,024 		JBrowse link
G NKX2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18339674) Ensembl
MGI		 PMID:18339674 GO_REF:0000107
G TFAP2C transcription factor AP-2 gamma acts_upstream_of_or_within ISO (PMID:19749747) MGI PMID:19749747 NCBI chr24:41,787,477...41,797,446
Ensembl chr24:41,783,490...41,796,509 		JBrowse link
ganglion mother cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NTF4 neurotrophin 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10681461) Ensembl
MGI		 PMID:10681461 GO_REF:0000107 NCBI chr 1:107,371,335...107,377,238
Ensembl chr 1:107,371,335...107,376,987 		JBrowse link
glial cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES5 hes family bHLH transcription factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10821751) Ensembl
MGI		 PMID:10821751 GO_REF:0000107 NCBI chr 5:57,387,961...57,389,412
Ensembl chr 5:57,388,674...57,389,388 		JBrowse link
G NFE2L1 NFE2 like bZIP transcription factor 1 acts_upstream_of_or_within ISO (PMID:23840004) MGI PMID:23840004 NCBI chr 9:24,344,697...24,356,918
Ensembl chr 9:24,346,585...24,362,646 		JBrowse link
G NRG1 neuregulin 1 acts_upstream_of_or_within ISO (PMID:21068328) MGI PMID:21068328 NCBI chr16:31,697,958...32,771,888
Ensembl chr16:31,706,851...32,771,932 		JBrowse link
glial cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17706960) Ensembl
MGI		 PMID:17706960 GO_REF:0000107 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927 		JBrowse link
G NTF3 neurotrophin 3 acts_upstream_of_or_within ISO (PMID:10384880) MGI PMID:10384880 NCBI chr27:39,383,017...39,454,613
Ensembl chr27:39,383,152...39,454,601 		JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (PMID:16330018) MGI PMID:16330018 NCBI chr20:50,175,489...50,268,865
Ensembl chr20:50,175,687...50,268,836 		JBrowse link
glial cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NFIA nuclear factor I A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31128945) Ensembl
MGI		 PMID:31128945 GO_REF:0000107 NCBI chr 5:48,489,521...49,064,867
Ensembl chr 5:48,496,773...49,064,848 		JBrowse link
G NFIB nuclear factor I B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31128945) Ensembl
MGI		 PMID:31128945 GO_REF:0000107 NCBI chr11:34,573,136...35,010,319
Ensembl chr11:34,579,431...34,901,322 		JBrowse link
G NFIX nuclear factor I X acts_upstream_of_or_within ISO (PMID:31128945) MGI PMID:31128945 NCBI chr20:49,117,087...49,187,023
Ensembl chr20:49,117,943...49,214,788 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12842915) Ensembl
MGI		 PMID:12842915 GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
inner cell mass cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LATS1 large tumor suppressor kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23824537) Ensembl
MGI		 PMID:23824537 GO_REF:0000107 NCBI chr 1:40,430,096...40,475,193
Ensembl chr 1:40,260,064...40,457,609 		JBrowse link
G LATS2 large tumor suppressor kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23824537) Ensembl
MGI		 PMID:23824537 GO_REF:0000107 NCBI chr25:17,110,620...17,169,826
Ensembl chr25:17,110,637...17,169,291 		JBrowse link
G PRDM14 PR/SET domain 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24183668) Ensembl
MGI		 PMID:24183668 GO_REF:0000107 NCBI chr29:19,203,798...19,220,149
Ensembl chr29:19,203,807...19,220,518 		JBrowse link
lateral inhibition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLL1 delta like canonical Notch ligand 1 involved_in ISO (MGI:5296438|PMID:21915337)
(MGI:3823133|PMID:18997111)		 UniProt PMID:18997111 PMID:21915337 MGI:3823133 MGI:5296438 NCBI chr12:72,265,078...72,272,347
Ensembl chr12:72,265,682...72,272,348 		JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10804175) Ensembl
MGI		 PMID:10804175 GO_REF:0000107
G TM2D3 TM2 domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:39,421,763...39,434,014
Ensembl chr 3:39,421,549...39,511,268 		JBrowse link
lymphatic endothelial cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NR2F2 nuclear receptor subfamily 2 group F member 2 involved_in ISO (PMID:18815287) BHF-UCL PMID:18815287 NCBI chr 3:44,135,143...44,148,836
Ensembl chr 3:44,136,463...44,148,524 		JBrowse link
G PDPN podoplanin involved_in ISS UniProt GO_REF:0000024 NCBI chr 2:83,552,735...83,581,375
Ensembl chr 2:83,552,830...83,581,375 		JBrowse link
G PROX1 prospero homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:11,996,282...12,047,693
Ensembl chr 7:11,996,703...12,044,036 		JBrowse link
mesenchymal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRD chordin involved_in ISO (PMID:11969257) MGI PMID:11969257 NCBI chr34:17,255,770...17,264,776
Ensembl chr34:17,255,562...17,271,713 		JBrowse link
mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NANOG Nanog homeobox acts_upstream_of
acts_upstream_of_or_within		 ISO (PMID:16801560) MGI PMID:16801560 NCBI chr27:37,262,558...37,266,449 JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:10742100) MGI PMID:10742100
G SMAD1 SMAD family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16801560) Ensembl
MGI		 PMID:16801560 GO_REF:0000107 NCBI chr15:44,093,491...44,171,177
Ensembl chr15:44,095,497...44,170,098 		JBrowse link
mesodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7657163) Ensembl
MGI		 PMID:7657163 GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653 		JBrowse link
G HOXA11 homeobox A11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919 		JBrowse link
G PAX2 paired box 2 involved_in ISO (MGI:3768605|PMID:17785448) UniProt PMID:17785448 MGI:3768605 NCBI chr28:13,442,894...13,519,853
Ensembl chr28:13,442,893...13,532,094 		JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of ISO (PMID:17462603) MGI PMID:17462603 NCBI chr15:51,541,197...51,548,765
Ensembl chr15:51,540,500...51,548,765 		JBrowse link
G SIX2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:47,399,152...47,403,503
Ensembl chr10:47,400,034...47,403,509 		JBrowse link
G TBX6 T-box transcription factor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9490412) Ensembl
MGI		 PMID:9490412 GO_REF:0000107 NCBI chr 6:18,093,201...18,098,592
Ensembl chr 6:18,093,189...18,097,636 		JBrowse link
muscle cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15800000) Ensembl
MGI		 PMID:15800000 GO_REF:0000107 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:18816853) MGI PMID:18816853 NCBI chr26:29,529,071...29,533,240
Ensembl chr26:29,528,878...29,532,784 		JBrowse link
muscle cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MEF2C myocyte enhancer factor 2C acts_upstream_of_or_within ISO (PMID:17786239) MGI PMID:17786239 NCBI chr 3:19,778,997...19,948,203
Ensembl chr 3:19,779,007...19,943,852 		JBrowse link
G TBX2 T-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:15459098) MGI PMID:15459098 NCBI chr 9:35,237,323...35,245,066
Ensembl chr 9:35,235,649...35,245,736 		JBrowse link
muscle cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MYL2 myosin light chain 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:1379240) TreeGrafter
MGI		 PMID:1379240 GO_REF:0000118 NCBI chr26:8,624,147...8,632,166
Ensembl chr26:8,464,176...8,632,232 		JBrowse link
myoblast fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPAS1 endothelial PAS domain protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:48,550,836...48,636,776
Ensembl chr10:48,551,410...48,634,844 		JBrowse link
G PITX1 paired like homeodomain 1 acts_upstream_of_or_within ISO (PMID:17384148) MGI PMID:17384148 NCBI chr11:23,069,731...23,075,085
Ensembl chr11:23,069,716...23,080,941 		JBrowse link
G TCF7L2 transcription factor 7 like 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10937998) Ensembl
MGI		 PMID:10937998 GO_REF:0000107 NCBI chr28:23,966,079...24,162,775
Ensembl chr28:23,966,073...24,163,737 		JBrowse link
myoblast fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MYOD1 myogenic differentiation 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12486129) Ensembl
MGI		 PMID:12486129 GO_REF:0000107 NCBI chr21:40,257,792...40,260,461
Ensembl chr21:40,258,027...40,259,712 		JBrowse link
myoblast fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ITGB1 integrin subunit beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9004034) Ensembl
MGI		 PMID:9004034 GO_REF:0000107 NCBI chr 2:3,728,472...3,757,696
Ensembl chr 2:3,670,596...3,756,961 		JBrowse link
negative regulation of cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLIS1 GLIS family zinc finger 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:55,231,650...55,455,470
Ensembl chr 5:55,160,743...55,455,423 		JBrowse link
G NANOG Nanog homeobox acts_upstream_of_or_within ISO (PMID:16801560) MGI PMID:16801560 NCBI chr27:37,262,558...37,266,449 JBrowse link
G NKX6-2 NK6 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11567614) Ensembl
MGI		 PMID:11567614 GO_REF:0000107 NCBI chr28:40,568,948...40,570,240
Ensembl chr28:40,569,093...40,570,793 		JBrowse link
G SOSTDC1 sclerostin domain containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22509524) Ensembl
MGI		 PMID:22509524 GO_REF:0000107 NCBI chr14:31,035,759...31,079,139
Ensembl chr14:31,022,766...31,026,737
Ensembl chr14:31,022,766...31,026,737 		JBrowse link
G SPDEF SAM pointed domain containing ETS transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19759516) Ensembl
MGI		 PMID:19759516 GO_REF:0000107 NCBI chr12:3,814,806...3,831,724
Ensembl chr12:3,815,300...3,831,477 		JBrowse link
negative regulation of cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11425898) Ensembl
MGI		 PMID:11425898 GO_REF:0000107
negative regulation of cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GFI1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within ISO (PMID:16230531) MGI PMID:16230531 NCBI chr 6:56,473,032...56,484,422
Ensembl chr 6:56,256,305...56,484,422 		JBrowse link
negative regulation of ectodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FZD7 frizzled class receptor 7 involved_in ISO (PMID:18681827) BHF-UCL PMID:18681827 NCBI chr37:11,054,572...11,061,173
Ensembl chr37:11,053,521...11,060,821 		JBrowse link
negative regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:52,738,333...52,739,962
Ensembl chr 3:52,738,366...52,739,755 		JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:35,697,428...35,701,596
Ensembl chr26:35,697,618...35,701,496 		JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:52,738,333...52,739,962
Ensembl chr 3:52,738,366...52,739,755 		JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (PMID:17462603) MGI PMID:17462603 NCBI chr15:51,541,197...51,548,765
Ensembl chr15:51,540,500...51,548,765 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 2:85,194,640...85,218,068
Ensembl chr 2:85,176,161...85,232,920 		JBrowse link
negative regulation of T-helper 17 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOXL3 lysyl oxidase like 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:48,590,996...48,610,264
Ensembl chr17:48,591,768...48,610,392 		JBrowse link
G TBX21 T-box transcription factor 21 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:24,077,752...24,086,560
Ensembl chr 9:24,077,761...24,086,261 		JBrowse link
G TNFSF18 TNF superfamily member 18 involved_in ISO (MGI:5551556|PMID:24107315) UniProt PMID:24107315 MGI:5551556 NCBI chr 7:25,983,064...25,994,605
Ensembl chr 7:25,963,719...25,992,801 		JBrowse link
neural crest cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDN1 endothelin 1 involved_in ISO (PMID:23933587) MGI PMID:23933587 NCBI chr35:11,808,892...11,815,383
Ensembl chr35:11,808,892...11,815,383 		JBrowse link
G EDNRA endothelin receptor type A involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:45,823,472...45,878,527
Ensembl chr15:45,823,560...45,876,463 		JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20130188) Ensembl
MGI		 PMID:20130188 GO_REF:0000107 NCBI chr16:24,262,451...24,306,162
Ensembl chr16:24,261,946...24,302,964 		JBrowse link
neural crest cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GSC goosecoid homeobox involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:63,684,149...63,707,030
Ensembl chr 8:63,684,137...63,707,054 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
neuroblast fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11032813), (PMID:12397111) Ensembl
MGI		 PMID:11032813 PMID:12397111 GO_REF:0000107 NCBI chr15:41,694,021...41,696,933
Ensembl chr15:41,694,269...41,695,391 		JBrowse link
neuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12629181), (PMID:16715081), (PMID:19191219)
(PMID:16020526)		 Ensembl
MGI		 PMID:12629181 PMID:16020526 PMID:16715081 PMID:19191219 GO_REF:0000107 NCBI chr15:41,694,021...41,696,933
Ensembl chr15:41,694,269...41,695,391 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17698011) Ensembl
MGI		 PMID:17698011 GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
G CHRD chordin involved_in ISO (PMID:11969257) MGI PMID:11969257 NCBI chr34:17,255,770...17,264,776
Ensembl chr34:17,255,562...17,271,713 		JBrowse link
G EPOP elongin BC and polycomb repressive complex 2 associated protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23180766) Ensembl
MGI
TreeGrafter		 PMID:23180766 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:23,549,088...23,552,433
Ensembl chr 9:23,549,615...23,550,754 		JBrowse link
G FOXN4 forkhead box N4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16020526) Ensembl
MGI		 PMID:16020526 GO_REF:0000107 NCBI chr26:17,730,638...17,757,173
Ensembl chr26:17,728,878...17,755,602 		JBrowse link
G GATA2 GATA binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19088086) Ensembl
MGI		 PMID:19088086 GO_REF:0000107 NCBI chr20:2,472,251...2,488,380
Ensembl chr20:2,473,912...2,480,991 		JBrowse link
G GBX1 gastrulation brain homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24010020) Ensembl
MGI		 PMID:24010020 GO_REF:0000107 NCBI chr16:15,195,705...15,213,425 JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16168404) Ensembl
MGI		 PMID:16168404 GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G GSX1 GS homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16715081) Ensembl
MGI		 PMID:16715081 GO_REF:0000107 NCBI chr25:11,853,483...11,855,169
Ensembl chr25:11,853,462...11,855,445 		JBrowse link
G GSX2 GS homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16715081) Ensembl
MGI		 PMID:16715081 GO_REF:0000107 NCBI chr13:46,640,172...46,642,405
Ensembl chr13:46,640,172...46,641,546 		JBrowse link
G ISL1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14766174) Ensembl
MGI		 PMID:14766174 GO_REF:0000107 NCBI chr 4:63,638,009...63,648,492
Ensembl chr 4:63,637,443...63,648,183 		JBrowse link
G ISL2 ISL LIM homeobox 2 acts_upstream_of_or_within ISO (PMID:14766174) MGI PMID:14766174
G LBX1 ladybird homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12062039) Ensembl
MGI		 PMID:12062039 GO_REF:0000107 NCBI chr28:13,872,846...13,875,521
Ensembl chr28:13,873,727...13,875,486 		JBrowse link
G LOC102151783 inhibitor of DNA binding 2 acts_upstream_of ISO (MGI:4821067|PMID:17681138) UniProt PMID:17681138 MGI:4821067 NCBI chr10:54,954,852...54,957,116 JBrowse link
G MYT1L myelin transcription factor 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:920,727...1,325,335
Ensembl chr17:922,276...1,057,585 		JBrowse link
G NKX2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18786356), (PMID:20181579) Ensembl
MGI		 PMID:18786356 PMID:20181579 GO_REF:0000107
G NKX6-2 NK6 homeobox 2 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:11567614) Ensembl
MGI		 PMID:11567614 GO_REF:0000107 NCBI chr28:40,568,948...40,570,240
Ensembl chr28:40,569,093...40,570,793 		JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16120638) Ensembl
MGI		 PMID:16120638 GO_REF:0000107 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277 		JBrowse link
G NOTCH3 notch receptor 3 acts_upstream_of_or_within ISO (PMID:16120638) MGI PMID:16120638 NCBI chr20:46,946,654...46,978,821
Ensembl chr20:46,937,485...46,978,219 		JBrowse link
G NRG1 neuregulin 1 acts_upstream_of_or_within ISO (PMID:11425901) MGI PMID:11425901 NCBI chr16:31,697,958...32,771,888
Ensembl chr16:31,706,851...32,771,932 		JBrowse link
G OLIG1 oligodendrocyte transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11955448) Ensembl
MGI		 PMID:11955448 GO_REF:0000107 NCBI chr31:27,718,925...27,721,301
Ensembl chr31:27,719,026...27,719,862 		JBrowse link
G OLIG2 oligodendrocyte transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11955448) Ensembl
MGI		 PMID:11955448 GO_REF:0000107 NCBI chr31:27,674,112...27,677,521
Ensembl chr31:27,674,107...27,676,822 		JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:16339193)
(PMID:26166575)		 MGI PMID:16339193 PMID:26166575 NCBI chr 8:32,435,169...32,445,093
Ensembl chr 8:32,435,863...32,445,446 		JBrowse link
G PAX3 paired box 3 acts_upstream_of_or_within ISO (PMID:9858722) MGI PMID:9858722 NCBI chr37:28,346,476...28,443,648
Ensembl chr37:28,346,563...28,444,561 		JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within ISO (PMID:9858722) MGI PMID:9858722 NCBI chr 2:79,813,835...79,952,490
Ensembl chr 2:79,815,748...79,915,003 		JBrowse link
G POU3F2 POU class 3 homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:57,103,712...57,108,522 JBrowse link
G PTF1A pancreas associated transcription factor 1a involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16039563) Ensembl
MGI		 PMID:16039563 GO_REF:0000107 NCBI chr 2:10,069,594...10,071,360
Ensembl chr 2:10,069,581...10,071,336 		JBrowse link
G RUNX1 RUNX family transcription factor 1 acts_upstream_of_or_within ISO (PMID:25834056) MGI PMID:25834056 NCBI chr31:30,170,859...30,420,344
Ensembl chr31:30,170,605...30,420,839 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16221724) Ensembl
MGI		 PMID:16221724 GO_REF:0000107 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903 		JBrowse link
G SMAD4 SMAD family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17698011) Ensembl
MGI		 PMID:17698011 GO_REF:0000107 NCBI chr 1:23,875,989...23,930,027
Ensembl chr 1:23,882,139...23,969,405 		JBrowse link
G SOX2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:17015430) MGI PMID:17015430 NCBI chr34:14,853,000...14,855,153 JBrowse link
G TGFB2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (PMID:15744664) MGI PMID:15744664 NCBI chr38:13,430,832...13,511,655
Ensembl chr38:13,429,148...13,510,242 		JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15744664) Ensembl
MGI		 PMID:15744664 GO_REF:0000107 NCBI chr11:56,191,383...56,223,042
Ensembl chr11:56,161,772...56,218,594 		JBrowse link
G WNT1 Wnt family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16339193) Ensembl
MGI		 PMID:16339193 GO_REF:0000107 NCBI chr27:5,588,151...5,592,254
Ensembl chr27:5,574,940...5,592,060 		JBrowse link
G ZNF521 zinc finger protein 521 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25834056) Ensembl
MGI		 PMID:25834056 GO_REF:0000107 NCBI chr 7:63,146,696...63,421,790
Ensembl chr 7:63,146,690...63,421,792 		JBrowse link
neuron fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15708565) Ensembl
MGI		 PMID:15708565 GO_REF:0000107 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927 		JBrowse link
G FEZF2 FEZ family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24997765) Ensembl
MGI		 PMID:24997765 GO_REF:0000107 NCBI chr20:28,704,287...28,708,620
Ensembl chr20:28,703,623...28,708,282 		JBrowse link
G FOXG1 forkhead box G1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22726835) Ensembl
MGI		 PMID:22726835 GO_REF:0000107 NCBI chr 8:8,276,300...8,279,785 JBrowse link
G LBX1 ladybird homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16234809) Ensembl
MGI		 PMID:16234809 GO_REF:0000107 NCBI chr28:13,872,846...13,875,521
Ensembl chr28:13,873,727...13,875,486 		JBrowse link
G LOC403934 cell division cycle 42 acts_upstream_of_or_within ISO (PMID:16892058) MGI PMID:16892058 NCBI chr 2:77,153,276...77,169,947
Ensembl chr 2:77,153,095...77,199,211 		JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:19592574) MGI PMID:19592574 NCBI chr 8:32,435,169...32,445,093
Ensembl chr 8:32,435,863...32,445,446 		JBrowse link
G PROX1 prospero homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12692551) Ensembl
MGI		 PMID:12692551 GO_REF:0000107 NCBI chr 7:11,996,282...12,047,693
Ensembl chr 7:11,996,703...12,044,036 		JBrowse link
G PRRX1 paired related homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23447615) Ensembl
MGI		 PMID:23447615 GO_REF:0000107 NCBI chr 7:28,065,570...28,138,734
Ensembl chr 7:28,068,711...28,138,787 		JBrowse link
G WNT1 Wnt family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16339193) Ensembl
MGI		 PMID:16339193 GO_REF:0000107 NCBI chr27:5,588,151...5,592,254
Ensembl chr27:5,574,940...5,592,060 		JBrowse link
neuron fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16469766) Ensembl
MGI		 PMID:16469766 GO_REF:0000107 NCBI chr15:41,694,021...41,696,933
Ensembl chr15:41,694,269...41,695,391 		JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in ISO (MGI:3823133|PMID:18997111) UniProt PMID:18997111 MGI:3823133 NCBI chr12:72,265,078...72,272,347
Ensembl chr12:72,265,682...72,272,348 		JBrowse link
G DMRTA2 DMRT like family A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21576465) Ensembl
MGI		 PMID:21576465 GO_REF:0000107 NCBI chr15:10,706,096...10,710,506 JBrowse link
G EHMT2 euchromatic histone lysine methyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24584053) Ensembl
MGI		 PMID:24584053 GO_REF:0000107 NCBI chr12:1,341,202...1,354,602
Ensembl chr12:1,341,191...1,354,584 		JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22513373) Ensembl
MGI		 PMID:22513373 GO_REF:0000107 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653 		JBrowse link
G FEV FEV transcription factor, ETS family member involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20818386) Ensembl
MGI		 PMID:20818386 GO_REF:0000107 NCBI chr37:25,548,578...25,552,092 JBrowse link
G FKBP8 FKBP prolyl isomerase 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15105374) Ensembl
MGI		 PMID:15105374 GO_REF:0000107 NCBI chr20:44,494,856...44,504,084
Ensembl chr20:44,489,219...44,598,497 		JBrowse link
G FOXA1 forkhead box A1 acts_upstream_of_or_within ISO (PMID:17596284) MGI PMID:17596284 NCBI chr 8:16,072,629...16,083,105
Ensembl chr 8:16,079,140...16,083,807 		JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:17596284)
(PMID:17922007)		 MGI PMID:17596284 PMID:17922007 NCBI chr24:1,010,370...1,013,791
Ensembl chr24:1,010,651...1,013,072 		JBrowse link
G GSX2 GS homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15930101) Ensembl
MGI		 PMID:15930101 GO_REF:0000107 NCBI chr13:46,640,172...46,642,405
Ensembl chr13:46,640,172...46,641,546 		JBrowse link
G ISL1 ISL LIM homeobox 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:63,638,009...63,648,492
Ensembl chr 4:63,637,443...63,648,183 		JBrowse link
G ISL2 ISL LIM homeobox 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118
G MIR125A microRNA mir-125a involved_in ISO (PMID:22357933) BHF-UCL PMID:22357933 NCBI chr 1:105,400,273...105,400,332
Ensembl chr 1:105,400,270...105,400,337 		JBrowse link
G MYT1L myelin transcription factor 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:920,727...1,325,335
Ensembl chr17:922,276...1,057,585 		JBrowse link
G NFIA nuclear factor I A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31128945) Ensembl
MGI		 PMID:31128945 GO_REF:0000107 NCBI chr 5:48,489,521...49,064,867
Ensembl chr 5:48,496,773...49,064,848 		JBrowse link
G NFIB nuclear factor I B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31128945) Ensembl
MGI		 PMID:31128945 GO_REF:0000107 NCBI chr11:34,573,136...35,010,319
Ensembl chr11:34,579,431...34,901,322 		JBrowse link
G NFIX nuclear factor I X acts_upstream_of_or_within ISO (PMID:31128945) MGI PMID:31128945 NCBI chr20:49,117,087...49,187,023
Ensembl chr20:49,117,943...49,214,788 		JBrowse link
G NKX2-2 NK2 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19592574)
(PMID:16339193)		 Ensembl
MGI		 PMID:16339193 PMID:19592574 GO_REF:0000107 NCBI chr24:1,933,176...1,935,875
Ensembl chr24:1,925,013...1,935,874 		JBrowse link
G NTRK3 neurotrophic receptor tyrosine kinase 3 ISO RGD PMID:15247919 RGD:2325628 NCBI chr 3:51,131,470...51,491,112
Ensembl chr 3:51,138,751...51,513,024 		JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:15888661) MGI PMID:15888661 NCBI chr 8:32,435,169...32,445,093
Ensembl chr 8:32,435,863...32,445,446 		JBrowse link
G POU3F2 POU class 3 homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:57,103,712...57,108,522 JBrowse link
G POU4F1 POU class 4 homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:31,992,657...31,997,066 JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22513373) Ensembl
MGI		 PMID:22513373 GO_REF:0000107 NCBI chr 8:35,676,705...35,679,534
Ensembl chr 8:35,676,479...35,679,534 		JBrowse link
G SMAD4 SMAD family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:23,875,989...23,930,027
Ensembl chr 1:23,882,139...23,969,405 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12842915) Ensembl
MGI		 PMID:12842915 GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15064766)
(PMID:15084464)		 MGI PMID:15064766 PMID:15084464 NCBI chr26:29,529,071...29,533,240
Ensembl chr26:29,528,878...29,532,784 		JBrowse link
G TLX3 T cell leukemia homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15064766)
(PMID:16234809)		 Ensembl
MGI		 PMID:15064766 PMID:16234809 GO_REF:0000107 NCBI chr 4:40,816,351...40,818,582
Ensembl chr 4:40,816,467...40,818,723 		JBrowse link
NK T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TOX thymocyte selection associated high mobility group box involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:9,542,471...9,841,759
Ensembl chr29:9,544,561...9,842,034 		JBrowse link
noradrenergic neuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:41,694,021...41,696,933
Ensembl chr15:41,694,269...41,695,391 		JBrowse link
Notch signaling pathway involved in arterial endothelial cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLL1 delta like canonical Notch ligand 1 involved_in ISO (MGI:3847069|PMID:19144989) UniProt PMID:19144989 MGI:3847069 NCBI chr12:72,265,078...72,272,347
Ensembl chr12:72,265,682...72,272,348 		JBrowse link
oligodendrocyte cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17678855) Ensembl
MGI		 PMID:17678855 GO_REF:0000107 NCBI chr15:41,694,021...41,696,933
Ensembl chr15:41,694,269...41,695,391 		JBrowse link
oligodendrocyte cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OLIG2 oligodendrocyte transcription factor 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr31:27,674,112...27,677,521
Ensembl chr31:27,674,107...27,676,822 		JBrowse link
G PAX6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9828088) Ensembl
MGI		 PMID:9828088 GO_REF:0000107
G SOX6 SRY-box transcription factor 6 acts_upstream_of_or_within ISO (PMID:17084361) MGI PMID:17084361 NCBI chr21:38,737,072...39,320,257
Ensembl chr21:38,737,247...39,216,549 		JBrowse link
osteoblast fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MEN1 menin 1 acts_upstream_of_or_within ISO (PMID:15150273) MGI PMID:15150273 NCBI chr18:52,346,747...52,352,884
Ensembl chr18:52,346,933...52,353,340 		JBrowse link
G RUNX2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15150273) Ensembl
MGI		 PMID:15150273 GO_REF:0000107 NCBI chr12:13,723,535...13,842,565
Ensembl chr12:13,628,539...13,840,785
Ensembl chr12:13,628,539...13,840,785 		JBrowse link
G SH3PXD2B SH3 and PX domains 2B involved_in ISO (MGI:5800302|PMID:27711054) UniProt PMID:27711054 MGI:5800302 NCBI chr 4:39,854,213...39,950,704
Ensembl chr 4:39,854,211...39,949,958 		JBrowse link
G SMAD1 SMAD family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15150273) Ensembl
MGI		 PMID:15150273 GO_REF:0000107 NCBI chr15:44,093,491...44,171,177
Ensembl chr15:44,095,497...44,170,098 		JBrowse link
G SMAD5 SMAD family member 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15150273) Ensembl
MGI		 PMID:15150273 GO_REF:0000107 NCBI chr11:24,027,603...24,082,673
Ensembl chr11:24,028,126...24,078,169 		JBrowse link
pancreatic A cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEUROD1 neuronal differentiation 1 acts_upstream_of_or_within ISO (PMID:17988662) MGI PMID:17988662 NCBI chr36:24,853,591...24,857,886 JBrowse link
G NKX2-2 NK2 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17202186)
(PMID:17988662)		 Ensembl
MGI		 PMID:17202186 PMID:17988662 GO_REF:0000107 NCBI chr24:1,933,176...1,935,875
Ensembl chr24:1,925,013...1,935,874 		JBrowse link
pancreatic PP cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEUROD1 neuronal differentiation 1 acts_upstream_of_or_within ISO (PMID:17988662) MGI PMID:17988662 NCBI chr36:24,853,591...24,857,886 JBrowse link
G NKX2-2 NK2 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17988662) Ensembl
MGI		 PMID:17988662 GO_REF:0000107 NCBI chr24:1,933,176...1,935,875
Ensembl chr24:1,925,013...1,935,874 		JBrowse link
paraxial mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXC2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:9106663) MGI PMID:9106663 NCBI chr 5:66,234,336...66,296,007
Ensembl chr 5:66,294,176...66,295,693 		JBrowse link
G FOXC2 forkhead box C2 involved_in IEA Ensembl GO_REF:0000107
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9126297) Ensembl
MGI		 PMID:9126297 GO_REF:0000107 NCBI chr14:864,393...899,698
Ensembl chr14:863,424...896,412 		JBrowse link
positive regulation of cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKX6-2 NK6 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11567614) Ensembl
MGI		 PMID:11567614 GO_REF:0000107 NCBI chr28:40,568,948...40,570,240
Ensembl chr28:40,569,093...40,570,793 		JBrowse link
G SPDEF SAM pointed domain containing ETS transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19759516) Ensembl
MGI		 PMID:19759516 GO_REF:0000107 NCBI chr12:3,814,806...3,831,724
Ensembl chr12:3,815,300...3,831,477 		JBrowse link
positive regulation of cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF2 fibroblast growth factor 2 acts_upstream_of_or_within ISO (PMID:18635606) MGI PMID:18635606 NCBI chr19:17,403,288...17,463,143
Ensembl chr19:16,994,661...17,463,151 		JBrowse link
G GFI1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within ISO (PMID:16230531) MGI PMID:16230531 NCBI chr 6:56,473,032...56,484,422
Ensembl chr 6:56,256,305...56,484,422 		JBrowse link
G PAX6 paired box 6 ISO RGD PMID:11880342 RGD:729590
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT3A Wnt family member 3A involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:864,393...899,698
Ensembl chr14:863,424...896,412 		JBrowse link
positive regulation of T-helper 17 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRD2 bromodomain containing 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr12:2,534,034...2,546,029
Ensembl chr12:2,534,034...2,546,029 		JBrowse link
G BRD4 bromodomain containing 4 involved_in ISO (MGI:6106706|PMID:28262505) UniProt PMID:28262505 MGI:6106706 NCBI chr20:46,844,795...46,927,620
Ensembl chr20:46,891,514...46,927,608 		JBrowse link
G EP300 E1A binding protein p300 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:24,076,538...24,156,708
Ensembl chr10:24,077,971...24,156,396 		JBrowse link
G IL23A interleukin 23 subunit alpha involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr10:635,384...640,715
Ensembl chr10:638,719...640,359 		JBrowse link
regulation of cardiac cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SOX17 SRY-box transcription factor 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:5,979,092...5,981,504
Ensembl chr29:5,979,261...5,981,124 		JBrowse link
regulation of cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
G GDF3 growth differentiation factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:37,125,845...37,129,567
Ensembl chr27:37,125,928...37,129,484 		JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within ISO (PMID:23070814) MGI PMID:23070814 NCBI chr 2:79,813,835...79,952,490
Ensembl chr 2:79,815,748...79,915,003 		JBrowse link
G ZNF157 zinc finger protein 157 acts_upstream_of_or_within ISO (PMID:22588720) MGI PMID:22588720 NCBI chr  X:40,952,543...41,005,828
Ensembl chr  X:40,952,636...41,005,133 		JBrowse link
regulation of cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LMO4 LIM domain only 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19323994) Ensembl
MGI		 PMID:19323994 GO_REF:0000107 NCBI chr 6:60,892,478...60,909,910
Ensembl chr 6:60,727,270...60,941,058 		JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:35,697,428...35,701,596
Ensembl chr26:35,697,618...35,701,496 		JBrowse link
regulation of inner ear auditory receptor cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ESRP1 epithelial splicing regulatory protein 1 involved_in ISO (MGI:5915403|PMID:29107558) UniProt PMID:29107558 MGI:5915403 NCBI chr29:39,322,516...39,388,363
Ensembl chr29:39,333,117...39,387,337 		JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16943278) Ensembl
MGI		 PMID:16943278 GO_REF:0000107 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923 		JBrowse link
G FGFR1 fibroblast growth factor receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16943278) Ensembl
MGI		 PMID:16943278 GO_REF:0000107 NCBI chr16:27,029,902...27,080,514
Ensembl chr16:27,031,588...27,078,261 		JBrowse link
regulation of neural crest cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMPR1A bone morphogenetic protein receptor type 1A NOT|involved_in ISO (MGI:3040576|PMID:15073157) BHF-UCL PMID:15073157 MGI:3040576 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 2:85,194,640...85,218,068
Ensembl chr 2:85,176,161...85,232,920 		JBrowse link
Sertoli cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RARA retinoic acid receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:22,254,803...22,298,614
Ensembl chr 9:22,254,806...22,289,459 		JBrowse link
sinoatrial node cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TBX18 T-box transcription factor 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:44,901,076...44,929,730
Ensembl chr12:44,873,119...44,929,205 		JBrowse link
skeletal muscle satellite cell commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX7 paired box 7 acts_upstream_of_or_within ISO (PMID:11030621) MGI PMID:11030621 NCBI chr 2:79,813,835...79,952,490
Ensembl chr 2:79,815,748...79,915,003 		JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15215207) Ensembl
MGI		 PMID:15215207 GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15215207) Ensembl
MGI		 PMID:15215207 GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19684112) Ensembl
MGI		 PMID:19684112 GO_REF:0000107 NCBI chr28:14,992,989...15,115,499
Ensembl chr28:14,992,618...15,112,389 		JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15215207) Ensembl
MGI		 PMID:15215207 GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15215207) Ensembl
MGI		 PMID:15215207 GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19684112) Ensembl
MGI		 PMID:19684112 GO_REF:0000107 NCBI chr28:14,992,989...15,115,499
Ensembl chr28:14,992,618...15,112,389 		JBrowse link
spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXC10 homeobox C10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18065432) Ensembl
MGI		 PMID:18065432 GO_REF:0000107 NCBI chr27:1,272,272...1,277,411
Ensembl chr27:1,273,131...1,323,370 		JBrowse link
G HOXD10 homeobox D10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18065432) Ensembl
MGI		 PMID:18065432 GO_REF:0000107 NCBI chr36:19,924,352...19,927,706
Ensembl chr36:19,916,175...19,927,724 		JBrowse link
G ISL1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19666821) Ensembl
MGI		 PMID:19666821 GO_REF:0000107 NCBI chr 4:63,638,009...63,648,492
Ensembl chr 4:63,637,443...63,648,183 		JBrowse link
G ISL2 ISL LIM homeobox 2 acts_upstream_of_or_within ISO (PMID:19666821) MGI PMID:19666821
G LHX3 LIM homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19666821) Ensembl
MGI		 PMID:19666821 GO_REF:0000107 NCBI chr 9:49,248,555...49,254,128
Ensembl chr 9:49,248,621...49,254,118 		JBrowse link
G LMO4 LIM domain only 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:60,892,478...60,909,910
Ensembl chr 6:60,727,270...60,941,058 		JBrowse link
G MNX1 motor neuron and pancreas homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10482234) InterPro
MGI
TreeGrafter		 PMID:10482234 GO_REF:0000002 GO_REF:0000118 NCBI chr16:19,509,038...19,514,378
Ensembl chr16:19,499,582...19,512,836 		JBrowse link
G OLIG3 oligodendrocyte transcription factor 3 acts_upstream_of_or_within ISO (PMID:15769945) MGI PMID:15769945 NCBI chr 1:29,919,043...29,921,713
Ensembl chr 1:29,920,190...29,921,008 		JBrowse link
spinal cord oligodendrocyte cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18287202) Ensembl
MGI		 PMID:18287202 GO_REF:0000107 NCBI chr15:41,694,021...41,696,933
Ensembl chr15:41,694,269...41,695,391 		JBrowse link
G NKX2-2 NK2 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18287202) Ensembl
MGI		 PMID:18287202 GO_REF:0000107 NCBI chr24:1,933,176...1,935,875
Ensembl chr24:1,925,013...1,935,874 		JBrowse link
G OLIG2 oligodendrocyte transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18287202) Ensembl
MGI		 PMID:18287202 GO_REF:0000107 NCBI chr31:27,674,112...27,677,521
Ensembl chr31:27,674,107...27,676,822 		JBrowse link
stem cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DMRTA2 DMRT like family A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21576465) Ensembl
MGI		 PMID:21576465 GO_REF:0000107 NCBI chr15:10,706,096...10,710,506 JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of ISO (PMID:17462603) MGI PMID:17462603 NCBI chr15:51,541,197...51,548,765
Ensembl chr15:51,540,500...51,548,765 		JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20228271) Ensembl
MGI		 PMID:20228271 GO_REF:0000107 NCBI chr29:5,979,092...5,981,504
Ensembl chr29:5,979,261...5,981,124 		JBrowse link
G SOX18 SRY-box transcription factor 18 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20228271) Ensembl
MGI		 PMID:20228271 GO_REF:0000107 NCBI chr24:47,494,581...47,496,563
Ensembl chr24:47,494,902...47,496,970 		JBrowse link
subpallium neuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9876181) Ensembl
MGI		 PMID:9876181 GO_REF:0000107 NCBI chr15:41,694,021...41,696,933
Ensembl chr15:41,694,269...41,695,391 		JBrowse link
G GSX2 GS homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11124115) Ensembl
MGI		 PMID:11124115 GO_REF:0000107 NCBI chr13:46,640,172...46,642,405
Ensembl chr13:46,640,172...46,641,546 		JBrowse link
T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8788039) Ensembl
MGI		 PMID:8788039 GO_REF:0000107 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658 		JBrowse link
G FOXN1 forkhead box N1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:42,734,228...42,749,856
Ensembl chr 9:42,735,656...42,748,632 		JBrowse link
G IL7 interleukin 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9252127) Ensembl
MGI		 PMID:9252127 GO_REF:0000107 NCBI chr29:26,384,493...26,422,586
Ensembl chr29:26,384,493...26,422,737 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO (PMID:8788039) MGI PMID:8788039 NCBI chr29:24,904...243,926
Ensembl chr29:35,007...243,895 		JBrowse link
G RAG2 recombination activating 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8788039) Ensembl
MGI		 PMID:8788039 GO_REF:0000107 NCBI chr18:31,614,143...31,621,489
Ensembl chr18:31,618,481...31,620,064 		JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8788039) Ensembl
MGI		 PMID:8788039 GO_REF:0000107 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109 		JBrowse link
T-helper 1 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IL4 interleukin 4 acts_upstream_of_or_within ISO (PMID:20706986) MGI PMID:20706986 NCBI chr11:20,972,693...20,981,539
Ensembl chr11:20,972,690...20,981,534 		JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:84,818,893...84,939,283
Ensembl chr 2:84,787,708...84,939,114 		JBrowse link
G SPN sialophorin involved_in ISO (PMID:18036228) UniProt PMID:18036228 NCBI chr 6:17,770,303...17,774,946 JBrowse link
G STAT6 signal transducer and activator of transcription 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20706986) Ensembl
MGI		 PMID:20706986 GO_REF:0000107 NCBI chr10:1,232,515...1,247,011
Ensembl chr10:1,233,691...1,247,075 		JBrowse link
G TBX21 T-box transcription factor 21 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:24,077,752...24,086,560
Ensembl chr 9:24,077,761...24,086,261 		JBrowse link
T-helper 17 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BATF basic leucine zipper ATF-like transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:48,537,036...48,561,154 JBrowse link
G IL6 interleukin 6 involved_in ISS UniProt GO_REF:0000024 NCBI chr14:36,474,268...36,478,519
Ensembl chr14:36,473,394...36,478,519 		JBrowse link
G IL6R interleukin 6 receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:42,877,731...42,920,149
Ensembl chr 7:42,880,885...42,920,090 		JBrowse link
G IRF4 interferon regulatory factor 4 involved_in ISO (MGI:5448096|PMID:22983707) UniProt PMID:22983707 MGI:5448096 NCBI chr35:760,367...782,314
Ensembl chr35:767,011...781,339 		JBrowse link
G LY9 lymphocyte antigen 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr38:21,522,898...21,554,652
Ensembl chr38:21,523,637...21,554,579 		JBrowse link
G OTUD5 OTU deubiquitinase 5 acts_upstream_of_or_within ISO (PMID:25470037) MGI PMID:25470037 NCBI chr  X:42,079,396...42,109,129
Ensembl chr  X:42,081,561...42,108,612 		JBrowse link
G SLAMF6 SLAM family member 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr38:21,742,228...21,769,521
Ensembl chr38:21,742,301...21,764,494 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:20,539,660...20,614,631
Ensembl chr 9:20,539,697...20,612,672 		JBrowse link
trophectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:10742100) MGI PMID:10742100
G TEAD4 TEA domain transcription factor 4 acts_upstream_of_or_within ISO (PMID:18083014) MGI PMID:18083014 NCBI chr27:41,744,100...41,783,223
Ensembl chr27:41,748,871...41,803,556 		JBrowse link
type B pancreatic cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKX2-2 NK2 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17202186), (PMID:17988662) Ensembl
MGI		 PMID:17202186 PMID:17988662 GO_REF:0000107 NCBI chr24:1,933,176...1,935,875
Ensembl chr24:1,925,013...1,935,874 		JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:41,694,021...41,696,933
Ensembl chr15:41,694,269...41,695,391 		JBrowse link
G DLL4 delta like canonical Notch ligand 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:8,059,463...8,068,742
Ensembl chr30:8,059,512...8,067,940 		JBrowse link
G FOXN4 forkhead box N4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:17,730,638...17,757,173
Ensembl chr26:17,728,878...17,755,602 		JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKX2-2 NK2 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10217145) Ensembl
MGI		 PMID:10217145 GO_REF:0000107 NCBI chr24:1,933,176...1,935,875
Ensembl chr24:1,925,013...1,935,874 		JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBX1 developing brain homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11239429) Ensembl
MGI		 PMID:11239429 GO_REF:0000107 NCBI chr21:42,207,205...42,214,954
Ensembl chr21:42,208,346...42,212,415 		JBrowse link
G DMRT3 doublesex and mab-3 related transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22932389) Ensembl
MGI		 PMID:22932389 GO_REF:0000107 NCBI chr 1:89,798,215...89,813,140
Ensembl chr 1:89,798,100...89,812,328 		JBrowse link
G LHX3 LIM homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19666821) Ensembl
MGI		 PMID:19666821 GO_REF:0000107 NCBI chr 9:49,248,555...49,254,128
Ensembl chr 9:49,248,621...49,254,118 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within ISO PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903 		JBrowse link
G SOX1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:20844123) MGI PMID:20844123 NCBI chr22:59,902,113...59,903,820 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17917
    cellular process 16926
      cellular developmental process 4594
        cell fate commitment 286
          B cell lineage commitment + 6
          DCT cell fate commitment + 0
          T cell lineage commitment + 32
          apical cell fate commitment 0
          asymmetric neuroblast division + 6
          cardiac cell fate commitment + 13
          cell fate commitment involved in formation of primary germ layer + 32
          cell fate commitment involved in pattern specification + 12
          cell fate determination + 39
          cell fate specification + 105
          cell-cell signaling involved in cell fate commitment + 3
          compound eye cone cell fate commitment + 0
          determination of imaginal disc primordium + 0
          eosinophil fate commitment + 2
          epithelial cell fate commitment + 18
          glial cell fate commitment + 18
          guard cell fate commitment 0
          hypothalamus gonadotrophin-releasing hormone neuron fate commitment 0
          inner cell mass cell fate commitment 3
          juxtaglomerulus cell fate commitment + 0
          lens fiber cell fate commitment 0
          mesangial cell fate commitment + 0
          mesenchymal cell fate commitment 1
          muscle cell fate commitment + 12
          myoblast fate commitment + 5
          negative regulation of cell fate commitment + 15
          neuroblast fate commitment + 1
          neuron fate commitment + 85
          oocyte fate commitment 0
          osteoblast fate commitment 5
          pancreatic E cell fate commitment 0
          positive regulation of cell fate commitment + 10
          pro-T cell lineage commitment 0
          proximal convoluted tubule segment 1 cell fate commitment 0
          regulation of cell fate commitment + 32
          renal interstitial fibroblast fate commitment + 0
          seed trichome initiation 0
          skeletal muscle satellite cell commitment + 1
          stem cell fate commitment + 10
          trophectodermal cell fate commitment 2
          vulval cell fate commitment + 0
Path 2
Term Annotations click to browse term
  biological_process 17917
    cellular process 16926
      cellular developmental process 4594
        cell differentiation 4593
          cell fate commitment 286
            B cell lineage commitment + 6
            DCT cell fate commitment + 0
            T cell lineage commitment + 32
            apical cell fate commitment 0
            asymmetric neuroblast division + 6
            cardiac cell fate commitment + 13
            cell fate commitment involved in formation of primary germ layer + 32
            cell fate commitment involved in pattern specification + 12
            cell fate determination + 39
            cell fate specification + 105
            cell-cell signaling involved in cell fate commitment + 3
            compound eye cone cell fate commitment + 0
            determination of imaginal disc primordium + 0
            eosinophil fate commitment + 2
            epithelial cell fate commitment + 18
            glial cell fate commitment + 18
            guard cell fate commitment 0
            hypothalamus gonadotrophin-releasing hormone neuron fate commitment 0
            inner cell mass cell fate commitment 3
            juxtaglomerulus cell fate commitment + 0
            lens fiber cell fate commitment 0
            mesangial cell fate commitment + 0
            mesenchymal cell fate commitment 1
            muscle cell fate commitment + 12
            myoblast fate commitment + 5
            negative regulation of cell fate commitment + 15
            neuroblast fate commitment + 1
            neuron fate commitment + 85
            oocyte fate commitment 0
            osteoblast fate commitment 5
            pancreatic E cell fate commitment 0
            positive regulation of cell fate commitment + 10
            pro-T cell lineage commitment 0
            proximal convoluted tubule segment 1 cell fate commitment 0
            regulation of cell fate commitment + 32
            renal interstitial fibroblast fate commitment + 0
            seed trichome initiation 0
            skeletal muscle satellite cell commitment + 1
            stem cell fate commitment + 10
            trophectodermal cell fate commitment 2
            vulval cell fate commitment + 0
paths to the root