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ONTOLOGY REPORT - ANNOTATIONS


Term:intermediate filament organization
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Accession:GO:0045109 term browser browse the term
Definition:Control of the spatial distribution of intermediate filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking.
Synonyms:exact_synonym: intermediate filament organisation


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intermediate filament organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agfg1 ArfGAP with FG repeats 1 acts_upstream_of_or_within ISO MGI:2182772 (MGI:3040020|PMID:14724135) RGD PMID:14724135 MGI:3040020 NCBI chr 9:88,607,508...88,663,486
Ensembl chr 9:88,607,508...88,662,224
JBrowse link
G Bfsp1 beaded filament structural protein 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:6414994|PMID:27559293)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:27559293 GO_REF:0000024 GO_REF:0000107 MGI:6414994 NCBI chr 3:137,935,345...137,992,652
Ensembl chr 3:137,935,345...137,969,658
JBrowse link
G Bfsp2 beaded filament structural protein 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:6414994|PMID:27559293)
UniProt
RGD
PMID:27559293 GO_REF:0000024 MGI:6414994 NCBI chr 8:111,908,614...111,965,889
Ensembl chr 8:111,908,614...111,965,889
JBrowse link
G Des desmin involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:24200904), (PMID:26724190)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:24200904 PMID:26724190 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:82,556,574...82,564,288
Ensembl chr 9:82,556,573...82,564,294
JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 involved_in ISO (PMID:10954706) RGD PMID:10954706 NCBI chr 4:2,711,329...2,774,969
Ensembl chr 4:2,711,385...2,774,890
JBrowse link
G Dsp desmoplakin involved_in ISO (MGI:3723417|PMID:16917092) RGD PMID:16917092 MGI:3723417 NCBI chr17:27,286,811...27,334,453
Ensembl chr17:27,286,796...27,334,379
JBrowse link
G Eppk1 epiplakin 1 involved_in ISO (PMID:15671067), (PMID:23398049)
(MGI:3805230|PMID:18285451), (MGI:5805359|PMID:25617501)
RGD PMID:15671067 PMID:18285451 PMID:23398049 PMID:25617501 MGI:3805230 MGI:5805359 NCBI chr 7:117,163,383...117,173,741 JBrowse link
G Flg filaggrin acts_upstream_of_or_within ISO (MGI:5521493|PMID:6170061) RGD PMID:6170061 MGI:5521493 NCBI chr 2:193,565,401...193,574,297 JBrowse link
G Gfap glial fibrillary acidic protein involved_in
acts_upstream_of_or_within
ISO
ISS
(PMID:15732097)
MGI:1857176|MGI:98932 (MGI:1889059|PMID:8692820), (MGI:3719550|PMID:11487638)
GO_REF:0000024
RGD
UniProt
PMID:8692820 PMID:11487638 PMID:15732097 GO_REF:0000024 MGI:1889059 MGI:3719550 NCBI chr10:90,990,762...90,999,435
Ensembl chr10:90,990,762...90,999,506
JBrowse link
G Kb15 type II keratin Kb15 acts_upstream_of_or_within ISO MGI:1333768|MGI:96691 (MGI:3525934|PMID:15601842) RGD PMID:15601842 MGI:3525934 NCBI chr 7:143,208,034...143,217,771
Ensembl chr 7:143,208,527...143,217,535
JBrowse link
G Klhl24 kelch-like family member 24 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:27889062)
UniProt
Ensembl
RGD
PMID:27889062 GO_REF:0000024 GO_REF:0000107 NCBI chr11:84,613,101...84,643,674
Ensembl chr11:84,615,760...84,633,504
JBrowse link
G Krt10 keratin 10 acts_upstream_of_or_within ISO MGI:96699 (MGI:5603985|PMID:24751727) RGD PMID:24751727 MGI:5603985 NCBI chr10:87,296,445...87,301,307
Ensembl chr10:87,296,451...87,300,736
JBrowse link
G Krt17 keratin 17 acts_upstream_of_or_within ISO MGI:1100845|MGI:1333768 (MGI:3525934|PMID:15601842) RGD PMID:15601842 MGI:3525934 NCBI chr10:88,158,993...88,163,712
Ensembl chr10:88,118,001...88,163,723
JBrowse link
G Krt2 keratin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4363845 (MGI:5603985|PMID:24751727)
Ensembl
RGD
PMID:24751727 GO_REF:0000107 MGI:5603985 NCBI chr 7:143,412,858...143,420,463
Ensembl chr 7:143,412,858...143,420,027
JBrowse link
G Krt20 keratin 20 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:3759340|PMID:12857878)
GO_REF:0000024
(PMID:12857878)
Ensembl
RGD
UniProt
PMID:12857878 GO_REF:0000024 GO_REF:0000107 MGI:3759340 NCBI chr10:87,342,514...87,351,045
Ensembl chr10:87,342,619...87,351,045
JBrowse link
G Krt25 keratin 25 acts_upstream_of_or_within ISO MGI:3707007 (MGI:3770737|PMID:17920809) RGD PMID:17920809 MGI:3770737 NCBI chr10:87,225,361...87,238,659
Ensembl chr10:87,225,343...87,232,723
JBrowse link
G Krt71 keratin 71 involved_in ISO (PMID:22592156) RGD PMID:22592156 NCBI chr 7:143,345,201...143,371,346
Ensembl chr 7:143,345,201...143,353,925
JBrowse link
G Krt9 keratin 9 involved_in ISO
IEA
ISS
(PMID:10218578)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:10218578 GO_REF:0000024 GO_REF:0000107 NCBI chr10:88,102,519...88,107,232
Ensembl chr10:88,102,519...88,107,232
JBrowse link
G Mtm1 myotubularin 1 involved_in ISO
ISS
IEA
(PMID:21135508)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:21135508 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:18,821,821...18,840,449
Ensembl chr 6:18,821,815...18,839,409
JBrowse link
G Nefl neurofilament light chain involved_in
acts_upstream_of_or_within
ISO (PMID:12432080), (PMID:17052987)
(MGI:1096547|PMID:7946341), (MGI:2182115|PMID:2121744)
RGD PMID:2121744 PMID:7946341 PMID:12432080 PMID:17052987 MGI:1096547 MGI:2182115 NCBI chr15:44,799,378...44,803,251
Ensembl chr15:44,799,334...44,804,574
JBrowse link
G Plec plectin involved_in ISO
IEA
MGI:3721885|MGI:3799314|MGI:3799315 (MGI:3797705|PMID:18490514), (MGI:3798347|PMID:18541706), (MGI:5567855|PMID:24487589), (MGI:5699472|PMID:26487297), (MGI:5790023|PMID:26519478)
GO_REF:0000107
RGD
Ensembl
PMID:18490514 PMID:18541706 PMID:24487589 PMID:26487297 PMID:26519478 GO_REF:0000107 MGI:3797705 MGI:3798347 MGI:5567855 MGI:5699472 MGI:5790023 NCBI chr 7:117,230,319...117,291,859
Ensembl chr 7:117,230,319...117,289,961
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1861186 (MGI:1929969|PMID:11171399)
Ensembl
RGD
PMID:11171399 GO_REF:0000107 MGI:1929969 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Tchh trichohyalin involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:2678962|PMID:12853460)
RGD PMID:12853460, PMID:21873635 MGI:2678962, RGD:13792537 NCBI chr 2:193,778,022...193,784,793
Ensembl chr 2:193,778,042...193,783,761
JBrowse link
G Vim vimentin involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
GO_REF:0000107
(MGI:6414994|PMID:27559293)
MGI:95697 (MGI:3719550|PMID:11487638)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:11487638 PMID:27559293 GO_REF:0000024 GO_REF:0000107 MGI:3719550 MGI:6414994 NCBI chr17:80,882,715...80,891,200
Ensembl chr17:80,882,666...80,891,212
JBrowse link
intermediate filament bundle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07034767.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr11:88,912,599...88,972,176 JBrowse link
G Eppk1 epiplakin 1 involved_in ISO (MGI:5816446|PMID:20926261) RGD PMID:20926261 MGI:5816446 NCBI chr 7:117,163,383...117,173,741 JBrowse link
G Krt14 keratin 14 involved_in ISS
ISO
GO_REF:0000024
(PMID:11724817)
UniProt
RGD
PMID:11724817 GO_REF:0000024 NCBI chr10:88,118,029...88,122,233
Ensembl chr10:88,055,823...88,122,233
JBrowse link
G Nefh neurofilament heavy chain involved_in
acts_upstream_of_or_within
IGI
ISO
PMID:11034913
MGI:97313|MGI:97314 (MGI:1342909|PMID:10461886)
RGD PMID:10461886, PMID:11034913 MGI:1342909, RGD:8554743 NCBI chr14:85,181,572...85,191,557
Ensembl chr14:85,181,572...85,191,557
JBrowse link
G Nefl neurofilament light chain acts_upstream_of_or_within
involved_in
ISO MGI:97309|MGI:97314 (MGI:1342909|PMID:10461886)
UniProtKB:P16884 (MGI:5553249|PMID:11034913)
RGD PMID:10461886 PMID:11034913 MGI:1342909 MGI:5553249 NCBI chr15:44,799,378...44,803,251
Ensembl chr15:44,799,334...44,804,574
JBrowse link
G Nefm neurofilament medium chain acts_upstream_of_or_within ISO MGI:97309|MGI:97313 (MGI:1342909|PMID:10461886) RGD PMID:10461886 MGI:1342909 NCBI chr15:44,855,307...44,860,604
Ensembl chr15:44,855,310...44,860,604
JBrowse link
G Pkp1 plakophilin 1 involved_in IBA
ISO
PMID:21873635
(PMID:10852826)
RGD PMID:10852826, PMID:21873635 RGD:13792537 NCBI chr13:52,705,174...52,753,089
Ensembl chr13:52,705,174...52,752,997
JBrowse link
G Pkp2 plakophilin 2 involved_in ISO (PMID:18474624) RGD PMID:18474624 NCBI chr11:88,912,163...88,972,213 JBrowse link
neurofilament bundle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nefh neurofilament heavy chain involved_in ISO (PMID:7536898) RGD PMID:7536898 NCBI chr14:85,181,572...85,191,557
Ensembl chr14:85,181,572...85,191,557
JBrowse link
G Nefl neurofilament light chain involved_in IDA
ISO
(PMID:12432080), (PMID:15857389) RGD PMID:12432080 PMID:15857389, PMID:7721944 RGD:9743935 NCBI chr15:44,799,378...44,803,251
Ensembl chr15:44,799,334...44,804,574
JBrowse link
G Nefm neurofilament medium chain involved_in IDA
IEA
GO_REF:0000002 InterPro PMID:7721944 GO_REF:0000002, RGD:9743935 NCBI chr15:44,855,307...44,860,604
Ensembl chr15:44,855,310...44,860,604
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19491
    cellular process 18344
      intermediate filament-based process 59
        intermediate filament cytoskeleton organization 53
          intermediate filament organization 30
            intermediate filament bundle assembly + 8
Path 2
Term Annotations click to browse term
  biological_process 19491
    cellular process 18344
      cellular component organization or biogenesis 6721
        cellular component organization 6481
          organelle organization 4060
            cytoskeleton organization 1453
              intermediate filament cytoskeleton organization 53
                intermediate filament organization 30
                  intermediate filament bundle assembly + 8
paths to the root