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ONTOLOGY REPORT - ANNOTATIONS

Term:intermediate filament cytoskeleton organization
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Accession:GO:0045104 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising intermediate filaments and their associated proteins.
Synonyms:exact_synonym: intermediate filament cytoskeleton organisation
 related_synonym: intermediate filament cytoskeleton organization and biogenesis

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intermediate filament cytoskeleton organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn3 ataxin 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20637808) MGI
Ensembl		 PMID:20637808 GO_REF:0000107 NCBI chrNW_004936733:306,400...347,161
Ensembl chrNW_004936733:310,836...347,112 		JBrowse link
G Bfsp2 beaded filament structural protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2673300|PMID:15037121) MGI
Ensembl		 PMID:15037121 GO_REF:0000107 MGI:2673300 NCBI chrNW_004936529:6,632,292...6,699,968
Ensembl chrNW_004936529:6,632,197...6,699,998 		JBrowse link
G Csnk1a1 casein kinase 1 alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:5,351,354...5,394,856
Ensembl chrNW_004936504:5,351,029...5,396,034 		JBrowse link
G Dsp desmoplakin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1327099|PMID:9864371) MGI
Ensembl
InterPro		 PMID:9864371 GO_REF:0000002 GO_REF:0000107 MGI:1327099 NCBI chrNW_004936534:5,029,008...5,076,467
Ensembl chrNW_004936534:5,028,911...5,077,199 		JBrowse link
G Dst dystonin involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936476:4,344,673...4,772,892
Ensembl chrNW_004936476:4,344,716...4,771,878 		JBrowse link
G Evpl envoplakin involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936594:1,164,980...1,181,957
Ensembl chrNW_004936594:1,162,475...1,182,020 		JBrowse link
G Fam83h family with sequence similarity 83 member H involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:8,413,055...8,418,360
Ensembl chrNW_004936470:8,406,912...8,418,895 		JBrowse link
G Ina internexin neuronal intermediate filament protein alpha acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2679157|PMID:14561875) MGI
Ensembl		 PMID:14561875 GO_REF:0000107 MGI:2679157 NCBI chrNW_004936600:2,747,649...2,760,517
Ensembl chrNW_004936600:2,746,772...2,760,573 		JBrowse link
G Krt18 keratin 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:10,290,706...10,294,647
Ensembl chrNW_004936512:10,290,690...10,294,651 		JBrowse link
G Krt3 keratin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:10,158,984...10,165,131
Ensembl chrNW_004936512:10,158,506...10,165,271 		JBrowse link
G LOC101957084 plectin involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936470:8,194,124...8,252,139
Ensembl chrNW_004936470:8,216,205...8,250,978 		JBrowse link
G LOC101958389 keratin, type II cytoskeletal 74 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:9,977,512...9,985,767
Ensembl chrNW_004936512:9,977,901...9,985,727 		JBrowse link
G LOC101958745 keratin, type I cytoskeletal 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:16,489,981...16,514,586
Ensembl chrNW_004936490:16,511,829...16,514,556 		JBrowse link
G Macf1 microtubule actin crosslinking factor 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936474:21,053,755...21,401,336
Ensembl chrNW_004936474:21,178,791...21,400,147 		JBrowse link
G Nefh neurofilament heavy chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2679157|PMID:14561875) MGI
Ensembl		 PMID:14561875 GO_REF:0000107 MGI:2679157 NCBI chrNW_004936657:3,443,406...3,453,096
Ensembl chrNW_004936657:3,443,485...3,453,133 		JBrowse link
G Nefm neurofilament medium chain acts_upstream_of_or_within ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chrNW_004936757:1,662,905...1,668,707
Ensembl chrNW_004936757:1,663,399...1,668,075 		JBrowse link
G Ppl periplakin involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936530:4,826,271...4,866,093
Ensembl chrNW_004936530:4,825,679...4,866,093 		JBrowse link
G Prph peripherin acts_upstream_of_or_within ISO (MGI:2653435|PMID:12642616) RGD
MGI		 PMID:8575457 PMID:12642616 MGI:2653435 RGD:633740 NCBI chrNW_004936512:7,046,275...7,050,958
Ensembl chrNW_004936512:7,047,253...7,051,007 		JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3612236|PMID:16365167) MGI
Ensembl		 PMID:16365167 GO_REF:0000107 MGI:3612236 NCBI chrNW_004936602:1,089,979...1,114,376
Ensembl chrNW_004936602:1,051,205...1,117,096 		JBrowse link
G Synm synemin involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936483:4,362,891...4,388,558
Ensembl chrNW_004936483:4,365,508...4,389,180 		JBrowse link
G Tor1a torsin family 1 member A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:17,012,661...17,020,657
Ensembl chrNW_004936487:17,011,670...17,020,699 		JBrowse link
intermediate filament bundle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbln bublin coiled coil protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:15,728,776...15,732,065
Ensembl chrNW_004936487:15,728,778...15,732,065 		JBrowse link
G LOC101961294 epiplakin involved_in ISO (MGI:5816446|PMID:20926261) UniProt PMID:20926261 MGI:5816446 NCBI chrNW_004936470:8,308,135...8,317,259 JBrowse link
G Nefh neurofilament heavy chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1342909|PMID:10461886) MGI
Ensembl		 PMID:10461886 GO_REF:0000107 MGI:1342909 NCBI chrNW_004936657:3,443,406...3,453,096
Ensembl chrNW_004936657:3,443,485...3,453,133 		JBrowse link
G Nefl neurofilament light chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1342909|PMID:10461886) Ensembl
MGI		 PMID:10461886 GO_REF:0000107 MGI:1342909 NCBI chrNW_004936757:1,642,122...1,646,499
Ensembl chrNW_004936757:1,642,222...1,645,697 		JBrowse link
G Nefm neurofilament medium chain acts_upstream_of_or_within ISO (MGI:1342909|PMID:10461886) MGI PMID:10461886 MGI:1342909 NCBI chrNW_004936757:1,662,905...1,668,707
Ensembl chrNW_004936757:1,663,399...1,668,075 		JBrowse link
G Pkp1 plakophilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:3,089,902...3,138,252
Ensembl chrNW_004936567:3,089,881...3,138,331 		JBrowse link
G Pkp2 plakophilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936607:3,458,406...3,530,066
Ensembl chrNW_004936607:3,458,073...3,532,543 		JBrowse link
intermediate filament organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agfg1 ArfGAP with FG repeats 1 acts_upstream_of_or_within ISO (MGI:3040020|PMID:14724135) MGI PMID:14724135 MGI:3040020 NCBI chrNW_004936525:8,463,475...8,504,201
Ensembl chrNW_004936525:8,463,475...8,504,188 		JBrowse link
G Bfsp1 beaded filament structural protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:2,566,698...2,599,946
Ensembl chrNW_004936485:2,566,521...2,600,030 		JBrowse link
G Bfsp2 beaded filament structural protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:6,632,292...6,699,968
Ensembl chrNW_004936529:6,632,197...6,699,998 		JBrowse link
G Des desmin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:1,807,902...1,814,936
Ensembl chrNW_004936569:1,807,805...1,815,562 		JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 involved_in ISO (PMID:10954706) UniProt PMID:10954706 NCBI chrNW_004936797:332,962...377,397 JBrowse link
G Dsp desmoplakin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:5,029,008...5,076,467
Ensembl chrNW_004936534:5,028,911...5,077,199 		JBrowse link
G Gfap glial fibrillary acidic protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3719550|PMID:11487638)
(MGI:1889059|PMID:8692820)		 MGI
Ensembl		 PMID:8692820 PMID:11487638 GO_REF:0000107 MGI:1889059 MGI:3719550 NCBI chrNW_004936541:1,265,915...1,275,232
Ensembl chrNW_004936541:1,265,436...1,275,296 		JBrowse link
G Klhl24 kelch like family member 24 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:6,116,117...6,151,244
Ensembl chrNW_004936578:6,116,068...6,151,297 		JBrowse link
G Krt10 keratin 10 acts_upstream_of_or_within ISO (MGI:5603985|PMID:24751727) MGI PMID:24751727 MGI:5603985 NCBI chrNW_004936490:15,783,636...15,788,605
Ensembl chrNW_004936490:15,783,618...15,788,634 		JBrowse link
G Krt2 keratin 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5603985|PMID:24751727) MGI
Ensembl		 PMID:24751727 GO_REF:0000107 MGI:5603985 NCBI chrNW_004936512:10,054,708...10,061,021
Ensembl chrNW_004936512:10,054,708...10,061,021 		JBrowse link
G Krt20 keratin 20 involved_in ISO (MGI:3759340|PMID:12857878)
(PMID:12857878)		 UniProt PMID:12857878 MGI:3759340
G Krt25 keratin 25 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3770737|PMID:17920809) MGI
Ensembl		 PMID:17920809 GO_REF:0000107 MGI:3770737 NCBI chrNW_004936490:15,727,697...15,733,784
Ensembl chrNW_004936490:15,727,697...15,733,784 		JBrowse link
G Krt6a keratin 6A acts_upstream_of_or_within ISO (MGI:3525934|PMID:15601842) MGI PMID:15601842 MGI:3525934 NCBI chrNW_004936512:9,903,206...9,908,009 JBrowse link
G Krt9 keratin 9 involved_in ISO (PMID:10218578) UniProt PMID:10218578 NCBI chrNW_004936490:16,477,991...16,481,797 JBrowse link
G LOC101957084 plectin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:8,194,124...8,252,139
Ensembl chrNW_004936470:8,216,205...8,250,978 		JBrowse link
G LOC101961294 epiplakin involved_in ISO (PMID:23398049)
(MGI:5805359|PMID:25617501)
(MGI:3805230|PMID:18285451)
(PMID:15671067)		 UniProt PMID:15671067 PMID:18285451 PMID:23398049 PMID:25617501 MGI:3805230 MGI:5805359 NCBI chrNW_004936470:8,308,135...8,317,259 JBrowse link
G LOC101970544 keratin, type II cytoskeletal 71 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:9,959,329...9,967,334
Ensembl chrNW_004936512:9,959,328...9,967,269 		JBrowse link
G LOC101971622 trichohyalin acts_upstream_of_or_within ISO (MGI:2678962|PMID:12853460) MGI PMID:12853460 MGI:2678962 NCBI chrNW_004936580:2,277,109...2,283,088 JBrowse link
G Mtm1 myotubularin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936714:1,792,893...1,870,338
Ensembl chrNW_004936714:1,792,845...1,870,389 		JBrowse link
G Nefl neurofilament light chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1096547|PMID:7946341), (MGI:2182115|PMID:2121744) MGI
Ensembl		 PMID:2121744 PMID:7946341 GO_REF:0000107 MGI:1096547 MGI:2182115 NCBI chrNW_004936757:1,642,122...1,646,499
Ensembl chrNW_004936757:1,642,222...1,645,697 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1929969|PMID:11171399) MGI
Ensembl		 PMID:11171399 GO_REF:0000107 MGI:1929969 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599 		JBrowse link
G Vim vimentin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3719550|PMID:11487638) MGI
Ensembl		 PMID:11487638 GO_REF:0000107 MGI:3719550 NCBI chrNW_004936520:10,051,692...10,059,324
Ensembl chrNW_004936520:10,052,012...10,059,182 		JBrowse link
intermediate filament polymerization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Krt5 keratin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:9,923,593...9,929,517
Ensembl chrNW_004936512:9,922,523...9,929,517 		JBrowse link
intermediate filament polymerization or depolymerization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nefl neurofilament light chain ISO RGD PMID:10362553 RGD:9698446 NCBI chrNW_004936757:1,642,122...1,646,499
Ensembl chrNW_004936757:1,642,222...1,645,697 		JBrowse link
G Nefm neurofilament medium chain ISO RGD PMID:10362553 RGD:9698446 NCBI chrNW_004936757:1,662,905...1,668,707
Ensembl chrNW_004936757:1,663,399...1,668,075 		JBrowse link
neurofilament bundle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nefh neurofilament heavy chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936657:3,443,406...3,453,096
Ensembl chrNW_004936657:3,443,485...3,453,133 		JBrowse link
G Nefl neurofilament light chain involved_in ISO
IEA		 RGD
Ensembl		 PMID:7721944 GO_REF:0000107 RGD:9743935 NCBI chrNW_004936757:1,642,122...1,646,499
Ensembl chrNW_004936757:1,642,222...1,645,697 		JBrowse link
G Nefm neurofilament medium chain ISO RGD PMID:7721944 RGD:9743935 NCBI chrNW_004936757:1,662,905...1,668,707
Ensembl chrNW_004936757:1,663,399...1,668,075 		JBrowse link
neurofilament cytoskeleton organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef28 Rho guanine nucleotide exchange factor 28 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3619625|PMID:16236762) MGI
Ensembl		 PMID:16236762 GO_REF:0000107 MGI:3619625 NCBI chrNW_004936549:2,685,953...2,977,754
Ensembl chrNW_004936549:2,686,941...2,932,203 		JBrowse link
G Atf2 activating transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:4,729,984...4,826,367
Ensembl chrNW_004936509:4,732,930...4,826,443 		JBrowse link
G Cln8 CLN8 transmembrane ER and ERGIC protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3709684|PMID:2061715) MGI
Ensembl		 PMID:2061715 GO_REF:0000107 MGI:3709684 NCBI chrNW_004936615:993,092...999,976
Ensembl chrNW_004936615:985,634...1,003,172 		JBrowse link
G Ina internexin neuronal intermediate filament protein alpha acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1339419|PMID:10350642) MGI
Ensembl		 PMID:10350642 GO_REF:0000107 MGI:1339419 NCBI chrNW_004936600:2,747,649...2,760,517
Ensembl chrNW_004936600:2,746,772...2,760,573 		JBrowse link
G LOC101972040 phospholipid-transporting ATPase IB involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936688:299,831...925,444
Ensembl chrNW_004936688:305,742...925,223 		JBrowse link
G Ndel1 nudE neurodevelopment protein 1 like 1 acts_upstream_of_or_within ISO (MGI:3047464|PMID:15208636) MGI PMID:15208636 MGI:3047464 NCBI chrNW_004936595:1,656,956...1,692,775
Ensembl chrNW_004936595:1,656,956...1,689,322 		JBrowse link
G Nefh neurofilament heavy chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1342909|PMID:10461886)
(MGI:4836441|PMID:20633607)		 MGI
Ensembl		 PMID:10461886 PMID:20633607 GO_REF:0000107 MGI:1342909 MGI:4836441 NCBI chrNW_004936657:3,443,406...3,453,096
Ensembl chrNW_004936657:3,443,485...3,453,133 		JBrowse link
G Nefl neurofilament light chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1339419|PMID:10350642)
(MGI:1342909|PMID:10461886)
(MGI:1100197|PMID:9398473), (MGI:1347434|PMID:15132161), (MGI:2148377|PMID:11487626), (MGI:2679157|PMID:14561875), (MGI:3664358|PMID:16920084)
(MGI:1934092|PMID:11343650)		 MGI
Ensembl		 PMID:9398473 PMID:10350642 PMID:10461886 PMID:11343650 PMID:11487626 More... GO_REF:0000107 MGI:1100197 MGI:1339419 MGI:1342909 MGI:1347434 MGI:1934092 MGI:2148377 MGI:2679157 MGI:3664358 NCBI chrNW_004936757:1,642,122...1,646,499
Ensembl chrNW_004936757:1,642,222...1,645,697 		JBrowse link
G Nefm neurofilament medium chain acts_upstream_of_or_within ISO (MGI:1203441|PMID:9566972)
(MGI:1342909|PMID:10461886)		 MGI PMID:9566972 PMID:10461886 MGI:1203441 MGI:1342909 NCBI chrNW_004936757:1,662,905...1,668,707
Ensembl chrNW_004936757:1,663,399...1,668,075 		JBrowse link
G Sod1 superoxide dismutase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1934092|PMID:11343650) MGI
Ensembl		 PMID:11343650 GO_REF:0000107 MGI:1934092 NCBI chrNW_004936500:10,345,154...10,352,873
Ensembl chrNW_004936500:10,345,154...10,352,867 		JBrowse link
G Vps54 VPS54 subunit of GARP complex acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2149279|PMID:11493023) MGI
Ensembl		 PMID:11493023 GO_REF:0000107 MGI:2149279 NCBI chrNW_004936491:8,835,397...8,922,403
Ensembl chrNW_004936491:8,833,285...8,922,711 		JBrowse link
positive regulation of intermediate filament depolymerization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nes nestin involved_in ISO PMID:12686602 UniProt PMID:12686602 RGD:633505 NCBI chrNW_004936580:5,837,949...5,847,499
Ensembl chrNW_004936580:5,837,936...5,847,020 		JBrowse link
postsynaptic intermediate filament cytoskeleton organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ina internexin neuronal intermediate filament protein alpha involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936600:2,747,649...2,760,517
Ensembl chrNW_004936600:2,746,772...2,760,573 		JBrowse link
G Nefh neurofilament heavy chain involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936657:3,443,406...3,453,096
Ensembl chrNW_004936657:3,443,485...3,453,133 		JBrowse link
G Nefl neurofilament light chain involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936757:1,642,122...1,646,499
Ensembl chrNW_004936757:1,642,222...1,645,697 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15101
    cellular process 14142
      intermediate filament-based process 53
        intermediate filament cytoskeleton organization 52
          intermediate filament organization + 27
          intermediate filament polymerization or depolymerization + 4
          neurofilament cytoskeleton organization 11
          postsynaptic intermediate filament cytoskeleton organization 3
Path 2
Term Annotations click to browse term
  biological_process 15101
    cellular process 14142
      cellular component organization or biogenesis 5838
        cellular component organization 5666
          organelle organization 3081
            cytoskeleton organization 1242
              intermediate filament cytoskeleton organization 52
                intermediate filament organization + 27
                intermediate filament polymerization or depolymerization + 4
                neurofilament cytoskeleton organization 11
                postsynaptic intermediate filament cytoskeleton organization 3
paths to the root