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ONTOLOGY REPORT - ANNOTATIONS

Term:intermediate filament cytoskeleton organization
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Accession:GO:0045104 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising intermediate filaments and their associated proteins.
Synonyms:exact_synonym: intermediate filament cytoskeleton organisation
 related_synonym: intermediate filament cytoskeleton organization and biogenesis

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intermediate filament cytoskeleton organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn3 ataxin 3 acts_upstream_of_or_within ISO (PMID:20637808) MGI PMID:20637808 NCBI chrNW_004955438:14,405,415...14,443,457
Ensembl chrNW_004955438:14,405,643...14,440,009 		JBrowse link
G Bfsp2 beaded filament structural protein 2 acts_upstream_of_or_within ISO (MGI:2673300|PMID:15037121) MGI PMID:15037121 MGI:2673300 NCBI chrNW_004955501:5,083,456...5,145,256
Ensembl chrNW_004955501:5,083,456...5,145,256 		JBrowse link
G Csnk1a1 casein kinase 1 alpha 1 involved_in ISO (PMID:23902688) UniProt PMID:23902688 NCBI chrNW_004955415:4,921,356...4,966,705
Ensembl chrNW_004955415:4,921,852...4,966,705 		JBrowse link
G Dsp desmoplakin acts_upstream_of_or_within ISO (MGI:1327099|PMID:9864371) MGI PMID:9864371 MGI:1327099 NCBI chrNW_004955465:6,356,970...6,391,206
Ensembl chrNW_004955465:6,356,863...6,392,207 		JBrowse link
G Dst dystonin involved_in ISO (PMID:11751855) UniProt PMID:11751855 NCBI chrNW_004955502:3,175,918...3,610,823
Ensembl chrNW_004955502:3,267,527...3,610,823 		JBrowse link
G Fam83h family with sequence similarity 83 member H involved_in ISO (PMID:23902688) UniProt PMID:23902688 NCBI chrNW_004955454:2,421,393...2,436,012
Ensembl chrNW_004955454:2,422,237...2,427,194 		JBrowse link
G Ina internexin neuronal intermediate filament protein alpha acts_upstream_of_or_within ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chrNW_004955485:7,238,723...7,266,995 JBrowse link
G Krt18 keratin 18 involved_in ISO (PMID:20346438) UniProt PMID:20346438 NCBI chrNW_004955458:227,017...230,752
Ensembl chrNW_004955458:226,805...232,728 		JBrowse link
G Krt3 keratin 3 involved_in ISO (PMID:9171831) UniProt PMID:9171831 NCBI chrNW_004955458:92,436...98,334
Ensembl chrNW_004955458:92,436...98,466 		JBrowse link
G Nefh neurofilament heavy chain acts_upstream_of_or_within ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chrNW_004955455:3,735,330...3,744,714
Ensembl chrNW_004955455:3,735,410...3,744,107 		JBrowse link
G Nefm neurofilament medium chain acts_upstream_of_or_within ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chrNW_004955403:47,920,408...47,926,922 JBrowse link
G Plec plectin involved_in ISO (MGI:5502798|PMID:23836526) MGI PMID:23836526 MGI:5502798 NCBI chrNW_004955454:2,583,138...2,644,308
Ensembl chrNW_004955454:2,583,138...2,643,211 		JBrowse link
G Prph peripherin acts_upstream_of_or_within ISO (MGI:2653435|PMID:12642616) RGD
MGI		 PMID:8575457 PMID:12642616 MGI:2653435 RGD:633740 NCBI chrNW_004955500:8,106,371...8,117,221
Ensembl chrNW_004955500:8,107,847...8,117,290 		JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO (MGI:3612236|PMID:16365167) MGI PMID:16365167 MGI:3612236 NCBI chrNW_004955429:17,980,956...18,049,723
Ensembl chrNW_004955429:18,025,932...18,049,723 		JBrowse link
G Tor1a torsin family 1 member A involved_in ISO (PMID:16361107) UniProt PMID:16361107 NCBI chrNW_004955513:30,655...36,299
Ensembl chrNW_004955513:30,655...36,360 		JBrowse link
intermediate filament bundle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbln bublin coiled coil protein involved_in ISO (PMID:33857431) UniProt PMID:33857431 NCBI chrNW_004955570:709,009...712,573
Ensembl chrNW_004955570:708,747...712,573 		JBrowse link
G Eppk1 epiplakin 1 involved_in ISO (MGI:5816446|PMID:20926261) UniProt PMID:20926261 MGI:5816446 NCBI chrNW_004955454:2,512,151...2,526,080 JBrowse link
G Nefh neurofilament heavy chain involved_in
acts_upstream_of_or_within		 ISO PMID:11034913
(MGI:1342909|PMID:10461886)		 BHF-UCL
MGI		 PMID:10461886 PMID:11034913 MGI:1342909 RGD:8554743 NCBI chrNW_004955455:3,735,330...3,744,714
Ensembl chrNW_004955455:3,735,410...3,744,107 		JBrowse link
G Nefl neurofilament light chain involved_in
acts_upstream_of_or_within		 ISO (MGI:5553249|PMID:11034913)
(MGI:1342909|PMID:10461886)		 BHF-UCL
MGI		 PMID:10461886 PMID:11034913 MGI:1342909 MGI:5553249 NCBI chrNW_004955403:47,946,413...47,951,734
Ensembl chrNW_004955403:47,946,353...47,952,026 		JBrowse link
G Nefm neurofilament medium chain acts_upstream_of_or_within ISO (MGI:1342909|PMID:10461886) MGI PMID:10461886 MGI:1342909 NCBI chrNW_004955403:47,920,408...47,926,922 JBrowse link
G Pkp1 plakophilin 1 involved_in ISO (PMID:10852826) BHF-UCL PMID:10852826 NCBI chrNW_004955406:37,420,019...37,465,588
Ensembl chrNW_004955406:37,419,856...37,465,655 		JBrowse link
G Pkp2 plakophilin 2 involved_in ISO (PMID:18474624) BHF-UCL PMID:18474624 NCBI chrNW_004955505:2,878,001...2,959,299
Ensembl chrNW_004955505:2,878,081...2,958,404 		JBrowse link
intermediate filament organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agfg1 ArfGAP with FG repeats 1 acts_upstream_of_or_within ISO (MGI:3040020|PMID:14724135) MGI PMID:14724135 MGI:3040020 NCBI chrNW_004955453:7,066,509...7,127,878
Ensembl chrNW_004955453:7,069,806...7,109,703 		JBrowse link
G Bfsp1 beaded filament structural protein 1 involved_in ISO (MGI:6414994|PMID:27559293) UniProt PMID:27559293 MGI:6414994 NCBI chrNW_004955415:26,507,381...26,535,545
Ensembl chrNW_004955415:26,507,528...26,535,551 		JBrowse link
G Bfsp2 beaded filament structural protein 2 involved_in ISO (MGI:6414994|PMID:27559293) UniProt PMID:27559293 MGI:6414994 NCBI chrNW_004955501:5,083,456...5,145,256
Ensembl chrNW_004955501:5,083,456...5,145,256 		JBrowse link
G Des desmin involved_in ISO (PMID:24200904), (PMID:26724190) UniProt PMID:24200904 PMID:26724190 NCBI chrNW_004955453:14,039,502...14,046,572
Ensembl chrNW_004955453:14,039,502...14,047,246 		JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 involved_in ISO (PMID:10954706) UniProt PMID:10954706 NCBI chrNW_004955579:240,058...298,592 JBrowse link
G Dsp desmoplakin involved_in ISO (MGI:3723417|PMID:16917092) BHF-UCL PMID:16917092 MGI:3723417 NCBI chrNW_004955465:6,356,970...6,391,206
Ensembl chrNW_004955465:6,356,863...6,392,207 		JBrowse link
G Eppk1 epiplakin 1 involved_in ISO (PMID:15671067)
(MGI:5805359|PMID:25617501)
(MGI:3805230|PMID:18285451)
(PMID:23398049)		 UniProt PMID:15671067 PMID:18285451 PMID:23398049 PMID:25617501 MGI:3805230 MGI:5805359 NCBI chrNW_004955454:2,512,151...2,526,080 JBrowse link
G Gfap glial fibrillary acidic protein involved_in
acts_upstream_of_or_within		 ISO (PMID:15732097)
(MGI:3719550|PMID:11487638)
(MGI:1889059|PMID:8692820)		 UniProt
MGI		 PMID:8692820 PMID:11487638 PMID:15732097 MGI:1889059 MGI:3719550 NCBI chrNW_004955451:17,695,835...17,703,894
Ensembl chrNW_004955451:17,695,835...17,703,268 		JBrowse link
G Klhl24 kelch like family member 24 involved_in ISO (PMID:27889062) UniProt PMID:27889062 NCBI chrNW_004955420:23,700,030...23,733,021
Ensembl chrNW_004955420:23,700,035...23,735,301 		JBrowse link
G Krt10 keratin 10 acts_upstream_of_or_within ISO (MGI:5603985|PMID:24751727) MGI PMID:24751727 MGI:5603985 NCBI chrNW_004955451:15,269,861...15,274,351
Ensembl chrNW_004955451:15,270,222...15,274,312 		JBrowse link
G Krt17 keratin 17 acts_upstream_of_or_within ISO (MGI:3525934|PMID:15601842) MGI PMID:15601842 MGI:3525934 NCBI chrNW_004955451:15,940,137...15,944,392 JBrowse link
G Krt2 keratin 2 acts_upstream_of_or_within ISO (MGI:5603985|PMID:24751727) MGI PMID:24751727 MGI:5603985 NCBI chrNW_004955547:3,027,767...3,035,244
Ensembl chrNW_004955547:3,027,767...3,035,244 		JBrowse link
G Krt25 keratin 25 acts_upstream_of_or_within ISO (MGI:3770737|PMID:17920809) MGI PMID:17920809 MGI:3770737 NCBI chrNW_004955451:15,216,868...15,223,383
Ensembl chrNW_004955451:15,216,809...15,264,012 		JBrowse link
G Krt6a keratin 6A acts_upstream_of_or_within ISO (MGI:3525934|PMID:15601842) MGI PMID:15601842 MGI:3525934 NCBI chrNW_004955547:2,902,962...2,907,670 JBrowse link
G Krt71 keratin 71 involved_in ISO (PMID:22592156) UniProt PMID:22592156 NCBI chrNW_004955547:2,953,853...2,962,711
Ensembl chrNW_004955547:2,953,808...3,005,228 		JBrowse link
G Krt9 keratin 9 involved_in ISO (PMID:10218578) UniProt PMID:10218578 NCBI chrNW_004955451:15,890,101...15,896,282
Ensembl chrNW_004955451:15,890,343...15,896,282 		JBrowse link
G Mtm1 myotubularin 1 involved_in ISO (PMID:21135508) UniProt PMID:21135508 NCBI chrNW_004955498:6,329,402...6,444,708
Ensembl chrNW_004955498:6,329,275...6,445,169 		JBrowse link
G Nefl neurofilament light chain involved_in
acts_upstream_of_or_within		 ISO (PMID:12432080), (PMID:17052987)
(MGI:1096547|PMID:7946341), (MGI:2182115|PMID:2121744)		 UniProt
MGI		 PMID:2121744 PMID:7946341 PMID:12432080 PMID:17052987 MGI:1096547 MGI:2182115 NCBI chrNW_004955403:47,946,413...47,951,734
Ensembl chrNW_004955403:47,946,353...47,952,026 		JBrowse link
G Plec plectin involved_in ISO (MGI:3797705|PMID:18490514)
(MGI:5790023|PMID:26519478)
(MGI:5699472|PMID:26487297)
(MGI:3798347|PMID:18541706), (MGI:5567855|PMID:24487589)		 MGI PMID:18490514 PMID:18541706 PMID:24487589 PMID:26487297 PMID:26519478 MGI:3797705 MGI:3798347 MGI:5567855 MGI:5699472 MGI:5790023 NCBI chrNW_004955454:2,583,138...2,644,308
Ensembl chrNW_004955454:2,583,138...2,643,211 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:1929969|PMID:11171399) MGI PMID:11171399 MGI:1929969 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Tchh trichohyalin acts_upstream_of_or_within ISO (MGI:2678962|PMID:12853460) MGI PMID:12853460 MGI:2678962 NCBI chrNW_004955589:293,887...302,128 JBrowse link
G Vim vimentin acts_upstream_of_or_within
involved_in		 ISO (MGI:3719550|PMID:11487638)
(MGI:6414994|PMID:27559293)		 MGI
UniProt		 PMID:11487638 PMID:27559293 MGI:3719550 MGI:6414994 NCBI chrNW_004955429:10,708,852...10,716,743
Ensembl chrNW_004955429:10,707,719...10,717,554 		JBrowse link
intermediate filament polymerization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Krt5 keratin 5 involved_in ISO (MGI:2179054|PMID:11408584) UniProt PMID:11408584 MGI:2179054 NCBI chrNW_004955547:2,926,154...2,931,954
Ensembl chrNW_004955547:2,773,523...2,932,609 		JBrowse link
intermediate filament polymerization or depolymerization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nefl neurofilament light chain ISO RGD PMID:10362553 RGD:9698446 NCBI chrNW_004955403:47,946,413...47,951,734
Ensembl chrNW_004955403:47,946,353...47,952,026 		JBrowse link
G Nefm neurofilament medium chain ISO RGD PMID:10362553 RGD:9698446 NCBI chrNW_004955403:47,920,408...47,926,922 JBrowse link
neurofilament bundle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nefh neurofilament heavy chain involved_in ISO (PMID:7536898) BHF-UCL PMID:7536898 NCBI chrNW_004955455:3,735,330...3,744,714
Ensembl chrNW_004955455:3,735,410...3,744,107 		JBrowse link
G Nefl neurofilament light chain involved_in ISO (PMID:15857389)
(PMID:12432080)		 RGD
UniProt		 PMID:7721944 PMID:12432080 PMID:15857389 RGD:9743935 NCBI chrNW_004955403:47,946,413...47,951,734
Ensembl chrNW_004955403:47,946,353...47,952,026 		JBrowse link
G Nefm neurofilament medium chain ISO RGD PMID:7721944 RGD:9743935 NCBI chrNW_004955403:47,920,408...47,926,922 JBrowse link
neurofilament cytoskeleton organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef28 Rho guanine nucleotide exchange factor 28 acts_upstream_of_or_within ISO (MGI:3619625|PMID:16236762) MGI PMID:16236762 MGI:3619625 NCBI chrNW_004955425:26,690,863...26,987,900
Ensembl chrNW_004955425:26,690,681...26,989,187 		JBrowse link
G Atf2 activating transcription factor 2 involved_in ISO (MGI:5007596|PMID:21533046) MGI PMID:21533046 MGI:5007596 NCBI chrNW_004955449:332,563...411,218
Ensembl chrNW_004955449:338,193...411,218 		JBrowse link
G Cln8 CLN8 transmembrane ER and ERGIC protein acts_upstream_of_or_within ISO (MGI:3709684|PMID:2061715) MGI PMID:2061715 MGI:3709684 NCBI chrNW_004955403:57,926,711...57,938,698
Ensembl chrNW_004955403:57,924,873...57,938,690 		JBrowse link
G Ina internexin neuronal intermediate filament protein alpha acts_upstream_of_or_within ISO (MGI:1339419|PMID:10350642) MGI PMID:10350642 MGI:1339419 NCBI chrNW_004955485:7,238,723...7,266,995 JBrowse link
G Ndel1 nudE neurodevelopment protein 1 like 1 acts_upstream_of_or_within ISO (MGI:3047464|PMID:15208636) MGI PMID:15208636 MGI:3047464 NCBI chrNW_004955467:8,432,806...8,486,563
Ensembl chrNW_004955467:8,432,806...8,468,155 		JBrowse link
G Nefh neurofilament heavy chain acts_upstream_of_or_within ISO (MGI:4836441|PMID:20633607)
(MGI:1342909|PMID:10461886)		 MGI PMID:10461886 PMID:20633607 MGI:1342909 MGI:4836441 NCBI chrNW_004955455:3,735,330...3,744,714
Ensembl chrNW_004955455:3,735,410...3,744,107 		JBrowse link
G Nefl neurofilament light chain acts_upstream_of_or_within ISO (MGI:1100197|PMID:9398473), (MGI:1347434|PMID:15132161), (MGI:2148377|PMID:11487626), (MGI:2679157|PMID:14561875), (MGI:3664358|PMID:16920084)
(MGI:1934092|PMID:11343650)
(MGI:1339419|PMID:10350642)
(MGI:1342909|PMID:10461886)		 MGI PMID:9398473 PMID:10350642 PMID:10461886 PMID:11343650 PMID:11487626 More... MGI:1100197 MGI:1339419 MGI:1342909 MGI:1347434 MGI:1934092 MGI:2148377 MGI:2679157 MGI:3664358 NCBI chrNW_004955403:47,946,413...47,951,734
Ensembl chrNW_004955403:47,946,353...47,952,026 		JBrowse link
G Nefm neurofilament medium chain acts_upstream_of_or_within ISO (MGI:1203441|PMID:9566972)
(MGI:1342909|PMID:10461886)		 MGI PMID:9566972 PMID:10461886 MGI:1203441 MGI:1342909 NCBI chrNW_004955403:47,920,408...47,926,922 JBrowse link
G Sod1 superoxide dismutase 1 acts_upstream_of_or_within ISO (MGI:1934092|PMID:11343650) MGI PMID:11343650 MGI:1934092 NCBI chrNW_004955407:31,261,451...31,267,657
Ensembl chrNW_004955407:31,263,863...31,267,727 		JBrowse link
G Vps54 VPS54 subunit of GARP complex acts_upstream_of_or_within ISO (MGI:2149279|PMID:11493023) MGI PMID:11493023 MGI:2149279 NCBI chrNW_004955424:20,329,009...20,443,652
Ensembl chrNW_004955424:20,327,754...20,445,980 		JBrowse link
positive regulation of intermediate filament depolymerization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nes nestin involved_in ISO PMID:12686602 UniProt PMID:12686602 RGD:633505 NCBI chrNW_004955545:2,748,132...2,756,595
Ensembl chrNW_004955545:2,748,078...2,756,301 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12267
    cellular process 11433
      intermediate filament-based process 46
        intermediate filament cytoskeleton organization 45
          intermediate filament organization + 27
          intermediate filament polymerization or depolymerization + 4
          neurofilament cytoskeleton organization 10
          postsynaptic intermediate filament cytoskeleton organization 0
Path 2
Term Annotations click to browse term
  biological_process 12267
    cellular process 11433
      cellular component organization or biogenesis 5265
        cellular component organization 5138
          organelle organization 2857
            cytoskeleton organization 1108
              intermediate filament cytoskeleton organization 45
                intermediate filament organization + 27
                intermediate filament polymerization or depolymerization + 4
                neurofilament cytoskeleton organization 10
                postsynaptic intermediate filament cytoskeleton organization 0
paths to the root