Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of viral genome replication
go back to main search page
Accession:GO:0045069 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of viral genome replication.

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
regulation of viral genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2 apoptosis regulator involved_in ISO (MGI:3700400|PMID:16950491) UniProt PMID:16950491 MGI:3700400 NCBI chrNW_004955402:46,911,125...47,084,214
Ensembl chrNW_004955402:46,916,266...47,084,485 		JBrowse link
G Ddx5 DEAD-box helicase 5 ISO RGD PMID:19224332 RGD:5128521 NCBI chrNW_004955478:7,367,049...7,375,043
Ensembl chrNW_004955478:7,366,956...7,376,358 		JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:17613256) MGI PMID:17613256 NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797 		JBrowse link
G Ppia peptidylprolyl isomerase A involved_in ISO (PMID:11250896) UniProt PMID:11250896 NCBI chrNW_004955456:7,381,923...7,383,203 JBrowse link
negative regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmga2 high mobility group AT-hook 2 involved_in ISO (PMID:17005673) UniProt PMID:17005673 NCBI chrNW_004955458:12,493,790...12,624,805 JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K involved_in ISO (PMID:18774950) UniProt PMID:18774950 NCBI chrNW_004955481:1,651,422...1,674,402
Ensembl chrNW_004955481:1,651,902...1,673,893 		JBrowse link
G Morc2 MORC family CW-type zinc finger 2 involved_in ISO (PMID:29211708)
(MGI:6271895|PMID:29728365)		 UniProt PMID:29211708 PMID:29728365 MGI:6271895 NCBI chrNW_004955455:5,124,737...5,164,495
Ensembl chrNW_004955455:5,124,737...5,164,495 		JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in ISO (PMID:29211708) UniProt PMID:29211708 NCBI chrNW_004955497:518,462...546,748 JBrowse link
G Resf1 retroelement silencing factor 1 involved_in ISO (MGI:6271895|PMID:29728365) UniProt PMID:29728365 MGI:6271895 NCBI chrNW_004955505:3,684,848...3,709,624 JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 involved_in ISO (MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365) UniProt PMID:20164836 PMID:29728365 MGI:5440670 MGI:6271895 NCBI chrNW_004955588:290,497...338,438
Ensembl chrNW_004955588:290,168...338,426 		JBrowse link
G Tasor transcription activation suppressor involved_in ISO (PMID:29211708) UniProt PMID:29211708 NCBI chrNW_004955430:6,440,655...6,480,956
Ensembl chrNW_004955430:6,442,084...6,480,802 		JBrowse link
G Trim28 tripartite motif containing 28 involved_in
acts_upstream_of_or_within		 ISO (MGI:5440670|PMID:20164836)
(PMID:19270682)		 UniProt
MGI		 PMID:19270682 PMID:20164836 MGI:5440670 NCBI chrNW_004955584:1,148,903...1,156,001 JBrowse link
G Znf684 zinc finger protein 684 acts_upstream_of_or_within ISO (PMID:19270682) MGI PMID:19270682 NCBI chrNW_004955537:416,010...430,356 JBrowse link
negative regulation of viral genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Banf1 BAF nuclear assembly factor 1 involved_in ISO (PMID:18005698) UniProt PMID:18005698 NCBI chrNW_004955422:19,337,038...19,338,824
Ensembl chrNW_004955422:19,337,038...19,338,824 		JBrowse link
G Ccl5 C-C motif chemokine ligand 5 involved_in ISO (PMID:10490959) BHF-UCL PMID:10490959 NCBI chrNW_004955481:10,293,758...10,301,118
Ensembl chrNW_004955481:10,293,399...10,301,143 		JBrowse link
G Eif2ak2 eukaryotic translation initiation factor 2 alpha kinase 2 involved_in ISO (PMID:19189853), (PMID:19840259)
(MGI:5487533|PMID:20038207)		 UniProt PMID:19189853 PMID:19840259 PMID:20038207 MGI:5487533 NCBI chrNW_004955441:4,908,318...4,944,343 JBrowse link
G Fam111a FAM111 trypsin like peptidase A involved_in ISO (PMID:23093934) UniProt PMID:23093934 NCBI chrNW_004955511:3,722,483...3,736,001
Ensembl chrNW_004955511:3,731,116...3,740,140 		JBrowse link
G Ifi16 interferon gamma inducible protein 16 involved_in ISO (PMID:22291595) UniProt PMID:22291595 NCBI chrNW_004955468:10,828,726...10,845,853 JBrowse link
G Ifih1 interferon induced with helicase C domain 1 involved_in ISO (PMID:33727702) UniProt PMID:33727702 NCBI chrNW_004955449:11,538,869...11,596,502
Ensembl chrNW_004955449:11,538,889...11,593,349 		JBrowse link
G Ifit1 interferon induced protein with tetratricopeptide repeats 1 involved_in ISO (PMID:19008854), (PMID:21976647) UniProt PMID:19008854 PMID:21976647 NCBI chrNW_004955425:3,581,705...3,588,528 JBrowse link
G Ifit5 interferon induced protein with tetratricopeptide repeats 5 involved_in ISO (PMID:23774268) UniProt PMID:23774268 NCBI chrNW_004955425:3,569,448...3,575,043 JBrowse link
G Ifnb1 interferon beta 1 involved_in ISO (PMID:19008854) BHF-UCL PMID:19008854 NCBI chrNW_004955434:23,301,623...23,302,304 JBrowse link
G Ilf3 interleukin enhancer binding factor 3 involved_in ISO (MGI:4867319|PMID:21123651) UniProt PMID:21123651 MGI:4867319 NCBI chrNW_004955495:1,814,012...1,844,605
Ensembl chrNW_004955495:1,827,860...1,844,369 		JBrowse link
G Isg15 ISG15 ubiquitin like modifier involved_in ISO (PMID:19357168)
(PMID:33727702)		 UniProt PMID:19357168 PMID:33727702 NCBI chrNW_004955486:9,706,878...9,707,876
Ensembl chrNW_004955486:9,706,703...9,707,949 		JBrowse link
G Isg20 interferon stimulated exonuclease gene 20 involved_in ISO (PMID:21036379) UniProt PMID:21036379 NCBI chrNW_004955416:16,305,534...16,321,596
Ensembl chrNW_004955416:16,311,499...16,321,102 		JBrowse link
G Ltf lactotransferrin involved_in ISO (PMID:25193851) AgBase PMID:25193851 NCBI chrNW_004955420:25,580,449...25,604,277
Ensembl chrNW_004955420:25,580,359...25,604,331 		JBrowse link
G Mavs mitochondrial antiviral signaling protein involved_in ISO (PMID:20451243)
(MGI:4881394|PMID:20451243)		 UniProt PMID:20451243 MGI:4881394 NCBI chrNW_004955415:14,691,918...14,704,782
Ensembl chrNW_004955415:14,695,438...14,703,672 		JBrowse link
G N4bp1 NEDD4 binding protein 1 involved_in ISO (PMID:31133753) UniProt PMID:31133753 NCBI chrNW_004955474:6,796,068...6,814,906
Ensembl chrNW_004955474:6,796,066...6,814,906 		JBrowse link
G Oas3 2'-5'-oligoadenylate synthetase 3 involved_in ISO (PMID:19056102), (PMID:23196181) UniProt PMID:19056102 PMID:23196181 NCBI chrNW_004955482:9,339,174...9,359,266 JBrowse link
G Oasl 2'-5'-oligoadenylate synthetase like involved_in ISO (PMID:18931074), (PMID:20074559) UniProt PMID:18931074 PMID:20074559 NCBI chrNW_004955455:10,658,080...10,682,493
Ensembl chrNW_004955455:10,657,440...10,682,546 		JBrowse link
G Plscr1 phospholipid scramblase 1 involved_in ISO (PMID:15308695)
(MGI:5284800|PMID:15308695)		 UniProt PMID:15308695 MGI:5284800 NCBI chrNW_004955474:10,953,381...10,989,100 JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:19264593) BHF-UCL PMID:19264593 NCBI chrNW_004955406:3,715,140...3,770,019
Ensembl chrNW_004955406:3,719,972...3,770,555 		JBrowse link
G Rnasel ribonuclease L involved_in ISO (PMID:23196181) ARUK-UCL PMID:23196181 NCBI chrNW_004955406:21,413,950...21,424,860
Ensembl chrNW_004955406:21,411,980...21,425,052 		JBrowse link
G Rsad2 radical S-adenosyl methionine domain containing 2 involved_in ISO (PMID:21957124)
(MGI:5431072|PMID:21880757)		 UniProt PMID:21880757 PMID:21957124 MGI:5431072 NCBI chrNW_004955487:1,988,226...2,001,731
Ensembl chrNW_004955487:1,987,405...2,001,731 		JBrowse link
G Shfl shiftless antiviral inhibitor of ribosomal frameshifting involved_in ISO (PMID:26735137) UniProt PMID:26735137 NCBI chrNW_004955495:1,431,677...1,437,035
Ensembl chrNW_004955495:1,431,023...1,440,821 		JBrowse link
G Srpk1 SRSF protein kinase 1 involved_in ISO (PMID:12417631) BHF-UCL PMID:12417631 NCBI chrNW_004955437:3,664,290...3,729,832 JBrowse link
G Srpk2 SRSF protein kinase 2 involved_in ISO (PMID:12417631) BHF-UCL PMID:12417631 NCBI chrNW_004955410:9,807,936...10,034,760
Ensembl chrNW_004955410:9,811,584...9,942,323 		JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:10490959) BHF-UCL PMID:10490959 NCBI chrNW_004955437:117,267...119,899
Ensembl chrNW_004955437:117,206...120,700 		JBrowse link
G Trim6 tripartite motif containing 6 involved_in ISO (PMID:24882218)
(MGI:5645191|PMID:24882218)		 UniProt PMID:24882218 MGI:5645191 NCBI chrNW_004955414:21,495,593...21,513,703
Ensembl chrNW_004955414:21,481,129...21,514,548 		JBrowse link
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 involved_in ISO (PMID:21102435), (PMID:21876179) UniProt PMID:21102435 PMID:21876179 RGD:8554819 NCBI chrNW_004955494:3,925,478...3,985,469
Ensembl chrNW_004955494:3,926,413...3,983,736 		JBrowse link
G Znfx1 zinc finger NFX1-type containing 1 involved_in ISO (MGI:6384069|PMID:31685995) UniProt PMID:31685995 MGI:6384069 NCBI chrNW_004955445:8,854,539...8,879,822
Ensembl chrNW_004955445:8,854,610...8,879,821 		JBrowse link
positive regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Top2a DNA topoisomerase II alpha involved_in ISO (PMID:16712776) UniProt PMID:16712776 NCBI chrNW_004955451:14,928,273...14,964,855
Ensembl chrNW_004955451:14,929,136...14,964,723 		JBrowse link
G Top2b DNA topoisomerase II beta involved_in ISO (PMID:16712776) UniProt PMID:16712776 NCBI chrNW_004955430:17,457,603...17,523,115
Ensembl chrNW_004955430:17,457,603...17,507,012 		JBrowse link
positive regulation of viral genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase RNA specific involved_in ISO (PMID:18362360)
(MGI:5447606|PMID:18362360)
(PMID:19651874)		 UniProt PMID:18362360 PMID:19651874 MGI:5447606 NCBI chrNW_004955545:1,078,319...1,106,938
Ensembl chrNW_004955545:1,078,319...1,106,938 		JBrowse link
G Adarb1 adenosine deaminase RNA specific B1 involved_in ISO (PMID:21289159) UniProt PMID:21289159 NCBI chrNW_004955407:41,886,286...41,962,846
Ensembl chrNW_004955407:41,886,286...41,962,897 		JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 involved_in ISO (PMID:23386060) UniProt PMID:23386060 NCBI chrNW_004955463:285,228...306,077
Ensembl chrNW_004955463:285,228...306,077 		JBrowse link
G Ddb1 damage specific DNA binding protein 1 involved_in ISO (PMID:23137809) AgBase PMID:23137809 NCBI chrNW_004955511:6,209,777...6,233,594
Ensembl chrNW_004955511:6,209,777...6,233,594 		JBrowse link
G Ddx3x DEAD-box helicase 3 X-linked involved_in ISO (PMID:20862261) AgBase PMID:20862261 NCBI chrNW_004955565:1,387,043...1,403,624
Ensembl chrNW_004955565:1,386,973...1,404,220 		JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 (inactive) involved_in ISO (PMID:26567527) AgBase PMID:26567527 NCBI chrNW_004955456:14,291,445...14,318,310
Ensembl chrNW_004955456:14,291,260...14,318,310 		JBrowse link
G Hacd3 3-hydroxyacyl-CoA dehydratase 3 involved_in ISO (PMID:18160438) AgBase PMID:18160438 NCBI chrNW_004955450:9,923,560...9,947,519
Ensembl chrNW_004955450:9,923,560...9,942,658 		JBrowse link
G Ifit1 interferon induced protein with tetratricopeptide repeats 1 involved_in ISO (PMID:19416887) BHF-UCL PMID:19416887 NCBI chrNW_004955425:3,581,705...3,588,528 JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator involved_in ISO (PMID:26735137) UniProt PMID:26735137 NCBI chrNW_004955408:9,002,443...9,080,938
Ensembl chrNW_004955408:9,002,458...9,080,938 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO (MGI:5693363|PMID:21191019) AgBase PMID:21191019 MGI:5693363 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259 		JBrowse link
G Nr5a2 nuclear receptor subfamily 5 group A member 2 involved_in ISO (PMID:19264593) BHF-UCL PMID:19264593 NCBI chrNW_004955406:36,263,257...36,415,494
Ensembl chrNW_004955406:36,263,184...36,415,525 		JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 involved_in ISO (PMID:26735137) UniProt PMID:26735137 NCBI chrNW_004955417:15,872,906...15,885,246
Ensembl chrNW_004955417:15,868,934...15,885,247 		JBrowse link
G Pde12 phosphodiesterase 12 involved_in ISO (PMID:15231837) UniProt PMID:15231837 NCBI chrNW_004955430:7,272,911...7,277,726
Ensembl chrNW_004955430:7,272,765...7,277,726 		JBrowse link
G Pkn2 protein kinase N2 involved_in ISO (PMID:15364941) AgBase PMID:15364941 NCBI chrNW_004955423:5,467,017...5,575,435
Ensembl chrNW_004955423:5,467,017...5,575,620 		JBrowse link
G Ppia peptidylprolyl isomerase A involved_in ISO (PMID:19932913) UniProt PMID:19932913 NCBI chrNW_004955456:7,381,923...7,383,203 JBrowse link
G Ppid peptidylprolyl isomerase D involved_in ISO (PMID:19932913) UniProt PMID:19932913 NCBI chrNW_004955471:12,309,224...12,323,198
Ensembl chrNW_004955471:12,305,236...12,323,198 		JBrowse link
G Ppie peptidylprolyl isomerase E involved_in ISO (PMID:19932913) UniProt PMID:19932913 NCBI chrNW_004955452:17,242,255...17,256,776
Ensembl chrNW_004955452:17,242,286...17,254,860 		JBrowse link
G Ppih peptidylprolyl isomerase H involved_in ISO (PMID:19932913) UniProt PMID:19932913 NCBI chrNW_004955537:2,211,566...2,229,444
Ensembl chrNW_004955537:2,211,410...2,230,452 		JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein involved_in ISO (PMID:20614012) UniProt PMID:20614012 NCBI chrNW_004955415:31,991,478...31,997,277
Ensembl chrNW_004955415:31,991,479...32,000,250 		JBrowse link
G Srpk1 SRSF protein kinase 1 involved_in ISO (PMID:20498328) BHF-UCL PMID:20498328 NCBI chrNW_004955437:3,664,290...3,729,832 JBrowse link
G Srpk2 SRSF protein kinase 2 involved_in ISO (PMID:20498328) BHF-UCL PMID:20498328 NCBI chrNW_004955410:9,807,936...10,034,760
Ensembl chrNW_004955410:9,811,584...9,942,323 		JBrowse link
G Stau1 staufen double-stranded RNA binding protein 1 involved_in ISO (PMID:23907398) AgBase PMID:23907398 NCBI chrNW_004955445:8,971,585...9,003,647 JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in ISO (PMID:11641396) UniProt PMID:11641396 NCBI chrNW_004955458:793,753...798,755
Ensembl chrNW_004955458:793,759...798,806 		JBrowse link
G Tmem39a transmembrane protein 39A involved_in ISO (PMID:31849860) UniProt PMID:31849860 NCBI chrNW_004955427:19,118,631...19,184,315
Ensembl chrNW_004955427:19,133,434...19,184,344 		JBrowse link
G Vapb VAMP associated protein B and C involved_in ISO (PMID:16227268) UniProt PMID:16227268 NCBI chrNW_004955445:1,098,454...1,122,879
Ensembl chrNW_004955445:1,098,454...1,120,823 		JBrowse link
regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cxcl8 C-X-C motif chemokine ligand 8 involved_in ISO (PMID:11483765) UniProt PMID:11483765 NCBI chrNW_004955474:247,326...250,355
Ensembl chrNW_004955474:241,501...250,643 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12321
    viral process 240
      viral genome replication 94
        regulation of viral genome replication 65
          negative regulation of viral genome replication + 37
          positive regulation of viral genome replication + 27
          regulation of single stranded viral RNA replication via double stranded DNA intermediate + 12
Path 2
Term Annotations click to browse term
  biological_process 12321
    biological regulation 8863
      regulation of biological process 8603
        regulation of viral process 131
          regulation of viral life cycle 107
            regulation of viral genome replication 65
              negative regulation of viral genome replication + 37
              positive regulation of viral genome replication + 27
              regulation of single stranded viral RNA replication via double stranded DNA intermediate + 12
paths to the root