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ONTOLOGY REPORT - ANNOTATIONS


Term:fibroblast apoptotic process
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Accession:GO:0044346 term browser browse the term
Definition:Any apoptotic process in a fibroblast, a connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules.
Synonyms:narrow_synonym: fibroblast apoptosis



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fibroblast apoptotic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway acts_upstream_of ISO (MGI:3701148|PMID:17227893) RGD PMID:17227893 MGI:3701148 NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696
JBrowse link
G Api5 apoptosis inhibitor 5 acts_upstream_of ISO (MGI:1096223|PMID:9307294) RGD PMID:9307294 MGI:1096223 NCBI chr 3:80,378,100...80,403,267
Ensembl chr 3:80,378,096...80,403,264
JBrowse link
G Bak1 BCL2-antagonist/killer 1 acts_upstream_of_or_within ISO (MGI:3689797|PMID:15901672) RGD PMID:15901672 MGI:3689797 NCBI chr20:5,100,480...5,109,669
Ensembl chr20:5,100,480...5,109,264
JBrowse link
G Bbc3 Bcl-2 binding component 3 acts_upstream_of ISO MGI:2681654 (MGI:2679929|PMID:14500851) RGD PMID:14500851 MGI:2679929 NCBI chr 1:77,013,281...77,022,509
Ensembl chr 1:77,014,543...77,022,509
JBrowse link
G Bcl10 BCL10, immune signaling adaptor NOT|acts_upstream_of_or_within ISO MGI:2158304 (MGI:1930354|PMID:11163238) RGD PMID:11163238 MGI:1930354 NCBI chr 2:234,840,880...234,850,520
Ensembl chr 2:234,840,858...234,850,523
JBrowse link
G Casp12 caspase 12 acts_upstream_of_or_within ISO (MGI:2667259|PMID:12847083) RGD PMID:12847083 MGI:2667259 NCBI chr 8:2,642,296...2,669,549
Ensembl chr 8:2,642,434...2,674,037
JBrowse link
G Casp3 caspase 3 acts_upstream_of_or_within ISO MGI:2158753 (MGI:2667259|PMID:12847083), (MGI:3615714|PMID:16469926) RGD PMID:12847083 PMID:16469926 MGI:2667259 MGI:3615714 NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648
JBrowse link
G Casp7 caspase 7 acts_upstream_of_or_within ISO MGI:107739 (MGI:3615714|PMID:16469926) RGD PMID:16469926 MGI:3615714 NCBI chr 1:255,437,195...255,476,737
Ensembl chr 1:255,437,172...255,476,729
JBrowse link
G Casp9 caspase 9 acts_upstream_of_or_within ISO (MGI:2667259|PMID:12847083) RGD PMID:12847083 MGI:2667259 NCBI chr 5:154,108,872...154,126,628
Ensembl chr 5:154,109,046...154,126,626
JBrowse link
G Cfdp1 craniofacial development protein 1 acts_upstream_of ISO (MGI:2384464|PMID:12153613) RGD PMID:12153613 MGI:2384464 NCBI chr19:39,718,313...39,823,819
Ensembl chr19:39,718,347...39,823,824
JBrowse link
G Cul3 cullin 3 acts_upstream_of_or_within ISO MGI:3714267 (MGI:3713609|PMID:17339333) RGD PMID:17339333 MGI:3713609 NCBI chr 9:81,592,641...81,670,428
Ensembl chr 9:81,592,641...81,670,462
JBrowse link
G Ddias DNA damage-induced apoptosis suppressor acts_upstream_of ISO (MGI:3718924|PMID:17515607) RGD PMID:17515607 MGI:3718924 NCBI chr 1:146,906,150...146,930,462
Ensembl chr 1:146,906,154...146,930,462
JBrowse link
G Gas6 growth arrest specific 6 acts_upstream_of ISO MGI:2675495 (MGI:3044336|PMID:15184064) RGD PMID:15184064 MGI:3044336 NCBI chr16:76,045,430...76,075,904
Ensembl chr16:76,045,426...76,075,904
JBrowse link
G Men1 menin 1 acts_upstream_of ISO MGI:1097161|MGI:99702 (MGI:3037372|PMID:14688275) RGD PMID:14688275 MGI:3037372 NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator acts_upstream_of ISO MGI:3784016 (MGI:3784021|PMID:11896600) RGD PMID:11896600 MGI:3784021 NCBI chr 1:181,213,292...181,215,327 JBrowse link
G Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 acts_upstream_of ISO MGI:2681649 (MGI:2679929|PMID:14500851) RGD PMID:14500851 MGI:2679929 NCBI chr18:59,986,187...59,990,174
Ensembl chr18:59,986,017...59,992,429
JBrowse link
negative regulation of fibroblast apoptotic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Api5 apoptosis inhibitor 5 acts_upstream_of_or_within ISO (MGI:1096223|PMID:9307294) RGD PMID:9307294 MGI:1096223 NCBI chr 3:80,378,100...80,403,267
Ensembl chr 3:80,378,096...80,403,264
JBrowse link
G Cfdp1 craniofacial development protein 1 acts_upstream_of_or_within ISO (MGI:2384464|PMID:12153613) RGD PMID:12153613 MGI:2384464 NCBI chr19:39,718,313...39,823,819
Ensembl chr19:39,718,347...39,823,824
JBrowse link
G Chd8 chromodomain helicase DNA binding protein 8 acts_upstream_of_or_within ISO (MGI:3839031|PMID:19151705) RGD PMID:19151705 MGI:3839031 NCBI chr15:24,905,789...24,965,461
Ensembl chr15:24,905,789...24,951,285
JBrowse link
G Ddias DNA damage-induced apoptosis suppressor acts_upstream_of_or_within ISO (MGI:3718924|PMID:17515607) RGD PMID:17515607 MGI:3718924 NCBI chr 1:146,906,150...146,930,462
Ensembl chr 1:146,906,154...146,930,462
JBrowse link
G Gas6 growth arrest specific 6 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2675495 (MGI:3044336|PMID:15184064)
(PMID:16359517)
UniProt
RGD
PMID:15184064 PMID:16359517 GO_REF:0000024 MGI:3044336 NCBI chr16:76,045,430...76,075,904
Ensembl chr16:76,045,426...76,075,904
JBrowse link
G Mir155 microRNA 155 IDA RGD PMID:32317960 RGD:151347420 NCBI chr11:23,774,654...23,774,718
Ensembl chr11:23,774,654...23,774,718
JBrowse link
G Mir21 microRNA 21 IDA RGD PMID:29084974 RGD:41404715 NCBI chr10:71,405,257...71,405,348
Ensembl chr10:71,405,257...71,405,348
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha acts_upstream_of_or_within ISO (MGI:3047434|PMID:15192701) RGD PMID:15192701 MGI:3047434 NCBI chr 2:115,175,275...115,249,034
Ensembl chr 2:115,174,984...115,249,032
JBrowse link
G Pik3cg phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma acts_upstream_of_or_within ISO (MGI:3047434|PMID:15192701) RGD PMID:15192701 MGI:3047434 NCBI chr 6:48,766,778...48,802,098
Ensembl chr 6:48,766,864...48,802,043
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in ISO
IEA
(PMID:14581477)
GO_REF:0000107
RGD
Ensembl
PMID:14581477 GO_REF:0000107 NCBI chr16:68,575,763...68,613,905
Ensembl chr16:68,575,763...68,614,286
JBrowse link
G Sirt1 sirtuin 1 IMP RGD PMID:23479127 RGD:9585774 NCBI chr20:25,307,143...25,329,260
Ensembl chr20:25,306,917...25,329,260
JBrowse link
positive regulation of fibroblast apoptotic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (MGI:3701148|PMID:17227893) RGD PMID:17227893 MGI:3701148 NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696
JBrowse link
G Bbc3 Bcl-2 binding component 3 acts_upstream_of_or_within ISO MGI:2681654 (MGI:2679929|PMID:14500851) RGD PMID:14500851 MGI:2679929 NCBI chr 1:77,013,281...77,022,509
Ensembl chr 1:77,014,543...77,022,509
JBrowse link
G Bcl2l11 Bcl2-like 11 involved_in ISO (PMID:11997495) RGD PMID:11997495 NCBI chr 3:115,366,783...115,404,068
Ensembl chr 3:115,366,646...115,404,068
JBrowse link
G Bid BH3 interacting domain death agonist acts_upstream_of_or_within ISO (MGI:84156|PMID:8918887) RGD PMID:8918887 MGI:84156 NCBI chr 4:154,113,198...154,136,353
Ensembl chr 4:154,113,198...154,134,720
JBrowse link
G Btg1 BTG anti-proliferation factor 1 involved_in ISO
ISS
(PMID:9690562)
GO_REF:0000024
RGD
UniProt
PMID:9690562 GO_REF:0000024 NCBI chr 7:31,341,391...31,343,649
Ensembl chr 7:31,341,027...31,343,649
JBrowse link
G Men1 menin 1 acts_upstream_of_or_within ISO MGI:1097161|MGI:99702 (MGI:3037372|PMID:14688275) RGD PMID:14688275 MGI:3037372 NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator acts_upstream_of_or_within ISO MGI:3784016 (MGI:3784021|PMID:11896600) RGD PMID:11896600 MGI:3784021 NCBI chr 1:181,213,292...181,215,327 JBrowse link
G Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 acts_upstream_of_or_within ISO MGI:2681649 (MGI:2679929|PMID:14500851) RGD PMID:14500851 MGI:2679929 NCBI chr18:59,986,187...59,990,174
Ensembl chr18:59,986,017...59,992,429
JBrowse link
G Prdm11 PR/SET domain 11 involved_in ISO (PMID:25499759) RGD PMID:25499759 NCBI chr 3:78,925,654...79,005,495
Ensembl chr 3:78,932,087...79,005,320
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:14581477)
Ensembl
RGD
PMID:14581477 GO_REF:0000107 NCBI chr16:68,575,763...68,613,905
Ensembl chr16:68,575,763...68,614,286
JBrowse link
G Socs1 suppressor of cytokine signaling 1 IMP RGD PMID:32317960 RGD:151347420 NCBI chr10:4,882,651...4,884,342
Ensembl chr10:4,882,560...4,884,383
JBrowse link
G Stk17b serine/threonine kinase 17b involved_in ISS
ISO
GO_REF:0000024
(PMID:9786912)
UniProt
RGD
PMID:9786912 GO_REF:0000024 NCBI chr 9:55,307,485...55,338,085
Ensembl chr 9:55,307,668...55,338,031
JBrowse link
G Tp63 tumor protein p63 involved_in ISO (PMID:9774969) RGD PMID:9774969 NCBI chr11:74,838,858...75,049,764
Ensembl chr11:74,838,859...75,049,398
JBrowse link
regulation of fibroblast apoptotic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdhd2 haloacid dehalogenase-like hydrolase domain containing 2 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr18:70,475,037...70,526,471
Ensembl chr18:70,474,926...70,526,470
JBrowse link
G Ier3ip1 immediate early response 3 interacting protein 1 involved_in ISO (PMID:21835305) RGD PMID:21835305 NCBI chr 4:132,331,372...132,342,316
Ensembl chr 4:132,332,180...132,342,316
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 IMP RGD PMID:12185582 RGD:9588231 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384
JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO MGI:1927345 (MGI:3708426|PMID:17116431) RGD PMID:17116431 MGI:3708426 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Xrcc2 X-ray repair cross complementing 2 acts_upstream_of_or_within ISO MGI:98834 (MGI:3708426|PMID:17116431) RGD PMID:17116431 MGI:3708426 NCBI chr 4:9,423,873...9,502,980
Ensembl chr 4:9,423,898...9,442,482
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20094
    cellular process 18691
      cell death 2260
        programmed cell death 2066
          apoptotic process 2009
            fibroblast apoptotic process 35
              negative regulation of fibroblast apoptotic process 11
              positive regulation of fibroblast apoptotic process 13
              regulation of fibroblast apoptotic process + 28
paths to the root