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ONTOLOGY REPORT - ANNOTATIONS

Term:retinoic acid-responsive element binding
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Accession:GO:0044323 term browser browse the term
Definition:Binding to a retinoic acid-responsive element, a variable direct repeat of the sequence PuGGTCA spaced by five nucleotides (DR5) found in the promoters of retinoic acid-responsive genes, to which retinoic acid receptors bind.
Synonyms:exact_synonym: RARE binding


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retinoic acid-responsive element binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myt1l myelin transcription factor 1-like enables IDA
IMP		 PMID:10606515 RGD
CAFA		 PMID:8631881 PMID:10606515 RGD:633486, RGD:12793025 NCBI chr 6:46,164,742...46,564,234
Ensembl chr 6:46,428,150...46,561,671 		JBrowse link
G Nr2f1 nuclear receptor subfamily 2, group F, member 1 IDA RGD PMID:7797489 RGD:633499 NCBI chr 2:8,040,375...8,050,123
Ensembl chr 2:8,040,377...8,050,123 		JBrowse link
G Rara retinoic acid receptor, alpha enables ISO (PMID:19917671) RGD PMID:19917671 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Rxra retinoid X receptor alpha enables ISO
IEA
IBA		 (PMID:19917671), (PMID:25592151)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:19917671 PMID:25592151 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712 		JBrowse link
G Rxrb retinoid X receptor beta enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:4,816,813...4,823,267
Ensembl chr20:4,816,815...4,828,773 		JBrowse link
G Rxrg retinoid X receptor gamma enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:79,743,430...79,785,173
Ensembl chr13:79,743,563...79,785,167 		JBrowse link
G Zfp536 zinc finger protein 536 enables ISO (PMID:19398580) RGD PMID:19398580 NCBI chr 1:90,000,359...90,463,423
Ensembl chr 1:90,002,858...90,462,990 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20732
    binding 17784
      organic cyclic compound binding 6222
        nucleic acid binding 3871
          transcription regulatory region nucleic acid binding 1300
            transcription cis-regulatory region binding 1295
              RNA polymerase II transcription regulatory region sequence-specific DNA binding 1189
                RNA polymerase II cis-regulatory region sequence-specific DNA binding 1020
                  retinoic acid-responsive element binding 7
Path 2
Term Annotations click to browse term
  molecular_function 20732
    binding 17784
      organic cyclic compound binding 6222
        nucleic acid binding 3871
          DNA binding 2302
            sequence-specific DNA binding 1470
              sequence-specific double-stranded DNA binding 1359
                transcription cis-regulatory region binding 1295
                  RNA polymerase II transcription regulatory region sequence-specific DNA binding 1189
                    RNA polymerase II cis-regulatory region sequence-specific DNA binding 1020
                      retinoic acid-responsive element binding 7
paths to the root