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ONTOLOGY REPORT - ANNOTATIONS


Term:main axon
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Accession:GO:0044304 term browser browse the term
Definition:The main axonal trunk, as opposed to the collaterals; i.e., excluding collaterals, terminal, spines, or dendrites.
Synonyms:exact_synonym: axon trunk
 related_synonym: axon shaft;   axonal shaft
 xref: NIF_Subcellular:sao1596975044



show annotations for term's descendants           Sort by:
 
main axon term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apbb1 amyloid beta precursor protein binding family B member 1 IDA RGD PMID:12843239 RGD:10053998 NCBI chr 1:159,896,889...159,920,505
Ensembl chr 1:159,896,880...159,920,627
JBrowse link
G App amyloid beta precursor protein IDA RGD PMID:12843239 RGD:10053998 NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561
JBrowse link
G Map2 microtubule-associated protein 2 NOT|located_in IDA PMID:3517689 ARUK-UCL PMID:3517689 RGD:13514082 NCBI chr 9:67,723,422...67,981,886
Ensembl chr 9:67,723,371...67,979,809
JBrowse link
G Mapt microtubule-associated protein tau located_in IDA PMID:2509111 RGD
ARUK-UCL
PMID:8795614 PMID:2509111 RGD:10412707, RGD:13514077 NCBI chr10:89,138,644...89,236,137
Ensembl chr10:89,138,627...89,236,129
JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 located_in ISO
ISS
IEA
(PMID:27723745)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:27723745 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:49,766,340...49,791,434
Ensembl chr 5:49,766,325...49,791,408
JBrowse link
G Tiam1 TIAM Rac1 associated GEF 1 IDA RGD PMID:11264310 RGD:10043321 NCBI chr11:29,031,347...29,380,153
Ensembl chr11:29,031,348...29,159,901
JBrowse link
G Trim46 tripartite motif-containing 46 located_in IDA
ISO
PMID:28426968
(MGI:6148385|PMID:28426968)
RGD PMID:28426968 PMID:28426968 MGI:6148385, RGD:13514087 NCBI chr 2:174,641,494...174,654,237
Ensembl chr 2:174,641,496...174,654,141
JBrowse link
axolemma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase ISO RGD RGD:11560526 NCBI chr12:19,407,359...19,413,713
Ensembl chr12:19,407,360...19,413,651
JBrowse link
G Adora1 adenosine A1 receptor IDA RGD PMID:16481441 RGD:1625231 NCBI chr13:45,658,872...45,695,821
Ensembl chr13:45,658,872...45,695,801
JBrowse link
G Adora2a adenosine A2a receptor IDA RGD PMID:16481441 RGD:1625231 NCBI chr20:13,315,848...13,333,386
Ensembl chr20:13,315,853...13,333,386
JBrowse link
G Ank1 ankyrin 1 IDA RGD PMID:2139035 RGD:1599113 NCBI chr16:68,876,294...69,054,812
Ensembl chr16:68,877,504...69,054,759
JBrowse link
G Chrna7 cholinergic receptor nicotinic alpha 7 subunit located_in IEA
ISO
GO_REF:0000107
(MGI:3796800|PMID:18458158)
Ensembl
RGD
PMID:18458158 GO_REF:0000107 MGI:3796800 NCBI chr 1:116,715,286...116,837,223
Ensembl chr 1:116,714,711...116,837,240
JBrowse link
G Cntnap2 contactin associated protein 2 located_in IDA
ISO
(PMID:19706678) RGD PMID:19706678 PMID:10624965 RGD:8554062 NCBI chr 4:74,109,455...76,366,434
Ensembl chr 4:74,109,472...76,362,027
JBrowse link
G Epb41l3 erythrocyte membrane protein band 4.1-like 3 colocalizes_with ISO (MGI:5296417|PMID:21966409) RGD PMID:21966409 MGI:5296417 NCBI chr 9:109,056,178...109,260,607
Ensembl chr 9:109,016,113...109,260,607
JBrowse link
G Gabbr1 gamma-aminobutyric acid type B receptor subunit 1 IDA RGD PMID:17924569 RGD:2315465 NCBI chr20:1,464,534...1,494,114
Ensembl chr20:1,464,534...1,493,994
JBrowse link
G Kcnc1 potassium voltage-gated channel subfamily C member 1 located_in ISO (MGI:3814977|PMID:18682278) RGD PMID:18682278 MGI:3814977 NCBI chr 1:96,902,953...96,944,744
Ensembl chr 1:96,902,953...96,944,744
JBrowse link
G Kcnc2 potassium voltage-gated channel subfamily C member 2 IDA RGD PMID:15488478 RGD:9685742 NCBI chr 7:47,700,035...47,883,979
Ensembl chr 7:47,700,288...47,883,968
JBrowse link
G Kcnc3 potassium voltage-gated channel subfamily C member 3 located_in ISO (MGI:3814977|PMID:18682278) RGD PMID:18682278 MGI:3814977 NCBI chr 1:95,080,960...95,095,165
Ensembl chr 1:95,080,960...95,095,160
JBrowse link
G Kcnh1 potassium voltage-gated channel subfamily H member 1 IDA RGD PMID:20111597 RGD:9693719 NCBI chr13:103,722,140...104,024,762
Ensembl chr13:103,722,245...104,024,740
JBrowse link
G Kcnj11 potassium inwardly-rectifying channel, subfamily J, member 11 IDA RGD PMID:20102598 RGD:7296980 NCBI chr 1:96,591,048...96,594,574
Ensembl chr 1:96,591,049...96,594,082
JBrowse link
G Mapk8ip3 mitogen-activated protein kinase 8 interacting protein 3 located_in ISO (MGI:3629289|PMID:16606357) RGD PMID:16606357 MGI:3629289 NCBI chr10:13,918,417...13,958,335
Ensembl chr10:13,918,400...13,958,273
JBrowse link
G Mapt microtubule-associated protein tau located_in ISO
IEA
(PMID:10747907)
GO_REF:0000107
RGD
Ensembl
PMID:10747907 GO_REF:0000107 NCBI chr10:89,138,644...89,236,137
Ensembl chr10:89,138,627...89,236,129
JBrowse link
G Myo1d myosin ID IDA RGD PMID:15809075 RGD:2314421 NCBI chr10:65,489,153...65,765,812
Ensembl chr10:65,489,154...65,766,349
JBrowse link
G Nrg1 neuregulin 1 located_in ISO (MGI:3796800|PMID:18458158) RGD PMID:18458158 MGI:3796800 NCBI chr16:59,250,658...60,303,024
Ensembl chr16:59,250,854...60,296,884
JBrowse link
G Robo1 roundabout guidance receptor 1 located_in ISO (MGI:3040153|PMID:15084255) RGD PMID:15084255 MGI:3040153 NCBI chr11:10,580,863...11,621,672
Ensembl chr11:10,580,908...11,620,203
JBrowse link
G Robo2 roundabout guidance receptor 2 located_in ISO (MGI:3040153|PMID:15084255) RGD PMID:15084255 MGI:3040153 NCBI chr11:12,528,949...14,096,726
Ensembl chr11:12,528,951...13,041,536
JBrowse link
G Slc1a2 solute carrier family 1 member 2 located_in ISO (MGI:1275841|PMID:9671661) RGD PMID:9671661 MGI:1275841 NCBI chr 3:89,005,129...89,126,498
Ensembl chr 3:89,005,129...89,126,498
JBrowse link
G Sptbn1 spectrin, beta, non-erythrocytic 1 located_in ISO (MGI:5296417|PMID:21966409) RGD PMID:21966409 MGI:5296417 NCBI chr14:103,842,684...104,008,507
Ensembl chr14:103,842,684...104,008,507
JBrowse link
G Thy1 Thy-1 cell surface antigen located_in IDA PMID:22479590 UniProt PMID:22479590 RGD:12793046 NCBI chr 8:44,389,495...44,394,688
Ensembl chr 8:44,389,513...44,394,659
JBrowse link
axon initial segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ank3 ankyrin 3 located_in IDA
ISO
IMP
IEA
(MGI:4837024|PMID:20877009), (MGI:5426783|PMID:11724816), (MGI:5708763|PMID:26671463), (MGI:5883190|PMID:27356871), (MGI:6212949|PMID:25950943)
PMID:28426968
(PMID:27356871)
GO_REF:0000107
RGD
Ensembl
PMID:11724816 PMID:20877009 PMID:25950943 PMID:26671463 PMID:27356871 More... GO_REF:0000107 MGI:4837024 MGI:5426783 MGI:5708763 MGI:5883190 MGI:6212949, RGD:6767287, RGD:8553674, RGD:13514087, RGD:13800538 NCBI chr20:18,602,267...19,225,831
Ensembl chr20:18,602,786...19,086,300
JBrowse link
G Bcan brevican IDA MMO:0000538 RGD PMID:17709431 RGD:14392774 NCBI chr 2:173,454,479...173,467,717
Ensembl chr 2:173,454,482...173,467,460
JBrowse link
G Bin1 bridging integrator 1 located_in IDA PMID:9182667 Alzheimers_University_of_Toronto PMID:9182667 RGD:8553847 NCBI chr18:24,009,731...24,067,267
Ensembl chr18:24,009,653...24,067,263
JBrowse link
G Camk2d calcium/calmodulin-dependent protein kinase II delta located_in ISO (MGI:4837024|PMID:20877009) RGD PMID:20877009 MGI:4837024 NCBI chr 2:215,023,785...215,287,351
Ensembl chr 2:215,024,004...215,286,178
JBrowse link
G Cck cholecystokinin IDA nonpyramidal neurons in the basolateral amygdalar complex after colchicine treatment RGD PMID:12763251 RGD:1626094 NCBI chr 8:121,153,499...121,160,194
Ensembl chr 8:121,153,500...121,160,084
JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 IDA RGD PMID:18434027 RGD:6902905 NCBI chr 9:39,447,532...39,497,883
Ensembl chr 9:39,448,034...39,493,183
JBrowse link
G Cntn2 contactin 2 is_active_in ISO (MGI:3848609|PMID:18509034) RGD PMID:18509034 MGI:3848609 NCBI chr13:43,942,868...43,975,973
Ensembl chr13:43,947,265...43,975,887
JBrowse link
G Cntnap2 contactin associated protein 2 is_active_in ISO (MGI:3848609|PMID:18509034) RGD PMID:18509034 MGI:3848609 NCBI chr 4:74,109,455...76,366,434
Ensembl chr 4:74,109,472...76,362,027
JBrowse link
G Dlg2 discs large MAGUK scaffold protein 2 is_active_in ISO MGI:2388036 (MGI:3848609|PMID:18509034) RGD PMID:18509034 MGI:3848609 NCBI chr 1:144,451,653...146,503,949
Ensembl chr 1:144,451,472...146,499,475
JBrowse link
G Kcna1 potassium voltage-gated channel subfamily A member 1 is_active_in ISO (MGI:3848609|PMID:18509034) RGD PMID:18509034 MGI:3848609 NCBI chr 4:159,464,223...159,472,905
Ensembl chr 4:159,464,188...159,472,682
JBrowse link
G Kcna2 potassium voltage-gated channel subfamily A member 2 is_active_in ISO (MGI:3848609|PMID:18509034) RGD PMID:18509034 MGI:3848609 NCBI chr 2:194,704,555...194,718,387
Ensembl chr 2:194,704,639...194,718,400
JBrowse link
G Kcna4 potassium voltage-gated channel subfamily A member 4 is_active_in ISO (MGI:3848609|PMID:18509034) RGD PMID:18509034 MGI:3848609 NCBI chr 3:93,756,399...93,778,004
Ensembl chr 3:93,756,446...93,769,162
JBrowse link
G Kcnab2 potassium voltage-gated channel subfamily A regulatory beta subunit 2 is_active_in ISO (MGI:3848609|PMID:18509034) RGD PMID:18509034 MGI:3848609 NCBI chr 5:162,899,511...162,988,057
Ensembl chr 5:162,901,896...162,988,243
JBrowse link
G Kcnq2 potassium voltage-gated channel subfamily Q member 2 located_in
is_active_in
ISO
IBA
(MGI:3617955|PMID:16525039)
PMID:21873635
RGD PMID:16525039 PMID:21873635 MGI:3617955, RGD:13792537 NCBI chr 3:168,194,776...168,253,831
Ensembl chr 3:168,195,357...168,275,071
JBrowse link
G Kcnq3 potassium voltage-gated channel subfamily Q member 3 is_active_in
located_in
IDA
IBA
ISO
IEA
PMID:21873635
(MGI:3617955|PMID:16525039)
GO_REF:0000107
RGD
Ensembl
PMID:16525039 PMID:24333508 PMID:21873635 GO_REF:0000107 MGI:3617955, RGD:9686369, RGD:13792537 NCBI chr 7:97,730,219...98,025,652
Ensembl chr 7:97,730,465...98,025,653
JBrowse link
G Lrrc7 leucine rich repeat containing 7 is_active_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:8824323 PMID:21873635 RGD:1299511, RGD:13792537 NCBI chr 2:247,147,752...247,533,332
Ensembl chr 2:247,147,752...247,634,547
JBrowse link
G Map1a microtubule-associated protein 1A located_in ISO (MGI:5632407|PMID:25788676) RGD PMID:25788676 MGI:5632407 NCBI chr 3:108,263,217...108,283,936
Ensembl chr 3:108,263,151...108,282,899
JBrowse link
G Map2 microtubule-associated protein 2 located_in IDA
ISO
PMID:28426968
(MGI:6148385|PMID:28426968)
RGD PMID:28426968 PMID:28426968 MGI:6148385, RGD:13514087 NCBI chr 9:67,723,422...67,981,886
Ensembl chr 9:67,723,371...67,979,809
JBrowse link
G Nav1 neuron navigator 1 located_in
is_active_in
ISO
IBA
(MGI:5708763|PMID:26671463)
PMID:21873635
RGD PMID:26671463 PMID:21873635 MGI:5708763, RGD:13792537 NCBI chr13:46,866,972...47,119,368
Ensembl chr13:46,873,689...47,126,449
JBrowse link
G Nfasc neurofascin located_in IDA
ISO
(MGI:5708763|PMID:26671463)
PMID:28426968
PMID:11724816
PMID:27356871
RGD PMID:26671463 PMID:22649224 PMID:28426968 PMID:11724816 PMID:27356871 MGI:5708763, RGD:12904752, RGD:13514087, RGD:8553674, RGD:12793037 NCBI chr13:43,997,223...44,183,863
Ensembl chr13:43,997,224...44,183,880
JBrowse link
G Nrcam neuronal cell adhesion molecule located_in IDA MMO:0000538
PMID:11724816
RGD
BHF-UCL
PMID:17709431 PMID:11724816 RGD:14392774, RGD:8553674 NCBI chr 6:61,402,813...61,698,536
Ensembl chr 6:61,329,863...61,702,992
JBrowse link
G Schip1 schwannomin interacting protein 1 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:152,127,171...152,888,587
Ensembl chr 2:152,126,953...152,888,585
JBrowse link
G Scn1a sodium voltage-gated channel alpha subunit 1 located_in IEA
ISO
GO_REF:0000107
(MGI:3712711|PMID:17537961)
Ensembl
RGD
PMID:17537961 GO_REF:0000107 MGI:3712711 NCBI chr 3:50,952,790...51,071,804
Ensembl chr 3:50,952,791...51,071,699
JBrowse link
G Scn2a sodium voltage-gated channel alpha subunit 2 IDA RGD PMID:12036953 RGD:625497 NCBI chr 3:50,302,781...50,437,504
Ensembl chr 3:50,302,877...50,437,214
JBrowse link
G Scn8a sodium voltage-gated channel alpha subunit 8 located_in IDA PMID:11724816 BHF-UCL PMID:11724816 RGD:8553674 NCBI chr 7:131,982,152...132,156,075
Ensembl chr 7:131,982,480...132,151,292
JBrowse link
G Sptbn4 spectrin, beta, non-erythrocytic 4 located_in IDA
ISO
MMO:0000538
(MGI:2181223|PMID:11807096), (MGI:4837024|PMID:20877009), (MGI:5708763|PMID:26671463), (MGI:5883190|PMID:27356871)
PMID:11086001
PMID:28426968
RGD PMID:11807096 PMID:20877009 PMID:26671463 PMID:27356871 PMID:17709431 More... MGI:2181223 MGI:4837024 MGI:5708763 MGI:5883190, RGD:14392774, RGD:8553353, RGD:13514087 NCBI chr 1:82,650,750...82,738,345
Ensembl chr 1:82,650,751...82,737,228
JBrowse link
G Trim46 tripartite motif-containing 46 located_in ISO (MGI:5708763|PMID:26671463) RGD PMID:26671463 MGI:5708763 NCBI chr 2:174,641,494...174,654,237
Ensembl chr 2:174,641,496...174,654,141
JBrowse link
internode region of axon term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ermn ermin located_in
is_active_in
ISO
IBA
(PMID:20934411)
PMID:21873635
(MGI:3612229|PMID:16421295)
RGD PMID:16421295 PMID:20934411 PMID:21873635 MGI:3612229, RGD:13792537 NCBI chr 3:42,628,160...42,633,816
Ensembl chr 3:42,626,309...42,633,744
JBrowse link
G Mbp myelin basic protein located_in
is_active_in
ISO
IBA
(MGI:3612229|PMID:16421295)
PMID:21873635
RGD PMID:16421295 PMID:21873635 MGI:3612229, RGD:13792537 NCBI chr18:75,855,878...75,966,404
Ensembl chr18:75,855,878...75,966,404
JBrowse link
G Pard3 par-3 family cell polarity regulator located_in ISS
ISO
GO_REF:0000024
(MGI:5295137|PMID:21949390)
UniProt
RGD
PMID:21949390 GO_REF:0000024 MGI:5295137 NCBI chr19:55,080,282...55,630,111
Ensembl chr19:55,080,282...55,629,778
JBrowse link
G Tubb4a tubulin, beta 4A class IVa located_in ISO (MGI:3612229|PMID:16421295) RGD PMID:16421295 MGI:3612229 NCBI chr 9:1,917,841...1,925,286
Ensembl chr 9:1,917,845...1,925,291
JBrowse link
juxtaparanode region of axon term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cntn2 contactin 2 located_in IEA
ISO
GO_REF:0000107
(MGI:2675531|PMID:12963709)
Ensembl
RGD
PMID:12963709 GO_REF:0000107 MGI:2675531 NCBI chr13:43,942,868...43,975,973
Ensembl chr13:43,947,265...43,975,887
JBrowse link
G Cntnap2 contactin associated protein 2 located_in IDA
ISO
(MGI:2675529|PMID:12975355), (MGI:2675531|PMID:12963709), (MGI:3721176|PMID:11567047), (MGI:3821526|PMID:18760366), (MGI:5613863|PMID:25378149), (MGI:6392103|PMID:29300891) RGD PMID:11567047 PMID:12963709 PMID:12975355 PMID:18760366 PMID:25378149 More... MGI:2675529 MGI:2675531 MGI:3721176 MGI:3821526 MGI:5613863 MGI:6392103, RGD:8554062 NCBI chr 4:74,109,455...76,366,434
Ensembl chr 4:74,109,472...76,362,027
JBrowse link
G Dlg2 discs large MAGUK scaffold protein 2 located_in IDA
ISO
PMID:20089912
PMID:19109503
(MGI:3829295|PMID:19109503)
RGD PMID:19109503 PMID:20089912 PMID:19109503 MGI:3829295, RGD:10047376, RGD:8554606 NCBI chr 1:144,451,653...146,503,949
Ensembl chr 1:144,451,472...146,499,475
JBrowse link
G Dlg4 discs large MAGUK scaffold protein 4 located_in IDA
ISO
IEA
PMID:20089912
PMID:19109503
(MGI:3829295|PMID:19109503)
GO_REF:0000107
RGD
Ensembl
PMID:19109503 PMID:20089912 PMID:19109503 GO_REF:0000107 MGI:3829295, RGD:10047376, RGD:8554606 NCBI chr10:54,740,700...54,769,097
Ensembl chr10:54,739,470...54,767,153
JBrowse link
G Epb41l3 erythrocyte membrane protein band 4.1-like 3 located_in ISO (MGI:2675529|PMID:12975355), (MGI:3621602|PMID:16551741), (MGI:5296417|PMID:21966409) RGD PMID:12975355 PMID:16551741 PMID:21966409 MGI:2675529 MGI:3621602 MGI:5296417 NCBI chr 9:109,056,178...109,260,607
Ensembl chr 9:109,016,113...109,260,607
JBrowse link
G Kcna1 potassium voltage-gated channel subfamily A member 1 located_in
is_active_in
ISO
IBA
IDA
(PMID:11086297)
PMID:21873635
(MGI:2675531|PMID:12963709), (MGI:3821526|PMID:18760366), (MGI:5607246|PMID:8361541)
RGD PMID:8361541 PMID:11086297 PMID:12963709 PMID:18760366 PMID:21873635 More... MGI:2675531 MGI:3821526 MGI:5607246, RGD:13792537, RGD:10047340 NCBI chr 4:159,464,223...159,472,905
Ensembl chr 4:159,464,188...159,472,682
JBrowse link
G Kcna2 potassium voltage-gated channel subfamily A member 2 located_in
is_active_in
IDA
IBA
ISO
PMID:20089912
PMID:21873635
(MGI:2675531|PMID:12963709), (MGI:3042560|PMID:15102918), (MGI:3617955|PMID:16525039), (MGI:3821526|PMID:18760366), (MGI:5613863|PMID:25378149)
PMID:10624965
RGD PMID:12963709 PMID:15102918 PMID:16525039 PMID:18760366 PMID:25378149 More... MGI:2675531 MGI:3042560 MGI:3617955 MGI:3821526 MGI:5613863, RGD:10047376, RGD:13792537, RGD:8554062 NCBI chr 2:194,704,555...194,718,387
Ensembl chr 2:194,704,639...194,718,400
JBrowse link
G Kcnab1 potassium voltage-gated channel subfamily A regulatory beta subunit 1 is_active_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:8756417 PMID:21873635 RGD:9743934, RGD:13792537 NCBI chr 2:149,137,025...149,603,540
Ensembl chr 2:149,137,041...149,603,534
JBrowse link
G Kcnab2 potassium voltage-gated channel subfamily A regulatory beta subunit 2 located_in
is_active_in
IDA
IEA
IBA
ISO
PMID:9334400
GO_REF:0000107
PMID:21873635
(MGI:2178002|PMID:11825900), (MGI:2675531|PMID:12963709)
(PMID:11086297)
Ensembl
RGD
PMID:11086297 PMID:11825900 PMID:12963709 PMID:9334400 PMID:21873635 GO_REF:0000107 MGI:2178002 MGI:2675531, RGD:10047182, RGD:13792537 NCBI chr 5:162,899,511...162,988,057
Ensembl chr 5:162,901,896...162,988,243
JBrowse link
G Sirt2 sirtuin 2 located_in IDA PMID:17344398 UniProt PMID:17344398 RGD:8553877 NCBI chr 1:84,053,883...84,076,975
Ensembl chr 1:84,052,903...84,076,975
JBrowse link
node of Ranvier term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ank3 ankyrin 3 located_in IDA
ISO
(MGI:5426783|PMID:11724816), (MGI:6148385|PMID:28426968)
MMO:0000538
RGD PMID:11724816 PMID:28426968 PMID:17548513 PMID:28426968 PMID:17709431 MGI:5426783 MGI:6148385, RGD:6767298, RGD:13514087, RGD:14392774 NCBI chr20:18,602,267...19,225,831
Ensembl chr20:18,602,786...19,086,300
JBrowse link
G Bcan brevican IDA MMO:0000538 RGD PMID:17709431 RGD:14392774 NCBI chr 2:173,454,479...173,467,717
Ensembl chr 2:173,454,482...173,467,460
JBrowse link
G Bin1 bridging integrator 1 located_in IDA PMID:9182667 Alzheimers_University_of_Toronto PMID:9182667 RGD:8553847 NCBI chr18:24,009,731...24,067,267
Ensembl chr18:24,009,653...24,067,263
JBrowse link
G Cdh1 cadherin 1 located_in ISO (MGI:4441217|PMID:20237282) RGD PMID:20237282 MGI:4441217 NCBI chr19:34,492,371...34,561,775
Ensembl chr19:34,492,371...34,561,775
JBrowse link
G Cntn2 contactin 2 located_in IEA
ISO
GO_REF:0000107
(MGI:2675531|PMID:12963709)
Ensembl
RGD
PMID:12963709 GO_REF:0000107 MGI:2675531 NCBI chr13:43,942,868...43,975,973
Ensembl chr13:43,947,265...43,975,887
JBrowse link
G Dag1 dystroglycan 1 located_in ISO (MGI:2663553|PMID:12797959) RGD PMID:12797959 MGI:2663553 NCBI chr 8:108,890,926...108,955,611
Ensembl chr 8:108,890,929...108,952,325
JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 located_in IEA
ISO
GO_REF:0000107
(MGI:4441217|PMID:20237282)
Ensembl
RGD
PMID:20237282 GO_REF:0000107 MGI:4441217 NCBI chr11:68,911,883...69,103,230
Ensembl chr11:68,911,883...69,102,689
JBrowse link
G Kcnq2 potassium voltage-gated channel subfamily Q member 2 located_in ISO (MGI:3617955|PMID:16525039) RGD PMID:16525039 MGI:3617955 NCBI chr 3:168,194,776...168,253,831
Ensembl chr 3:168,195,357...168,275,071
JBrowse link
G Kcnq3 potassium voltage-gated channel subfamily Q member 3 located_in IEA
ISO
GO_REF:0000107
(MGI:3617955|PMID:16525039)
Ensembl
RGD
PMID:16525039 GO_REF:0000107 MGI:3617955 NCBI chr 7:97,730,219...98,025,652
Ensembl chr 7:97,730,465...98,025,653
JBrowse link
G Myoc myocilin located_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5527213|PMID:23897819)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23897819 GO_REF:0000024 GO_REF:0000107 MGI:5527213 NCBI chr13:74,976,730...74,987,128
Ensembl chr13:74,976,730...74,987,127
JBrowse link
G Nfasc neurofascin colocalizes_with
located_in
IDA
ISO
PMID:11470829
(MGI:3836161|PMID:19185024), (MGI:5629915|PMID:25653379)
PMID:16652168
MMO:0000538
RGD PMID:19185024 PMID:25653379 PMID:11470829 PMID:16652168 PMID:17709431 MGI:3836161 MGI:5629915, RGD:13825432, RGD:8553545, RGD:14392774 NCBI chr13:43,997,223...44,183,863
Ensembl chr13:43,997,224...44,183,880
JBrowse link
G Nrcam neuronal cell adhesion molecule IDA MMO:0000538 RGD PMID:17709431 RGD:14392774 NCBI chr 6:61,402,813...61,698,536
Ensembl chr 6:61,329,863...61,702,992
JBrowse link
G Schip1 schwannomin interacting protein 1 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:152,127,171...152,888,587
Ensembl chr 2:152,126,953...152,888,585
JBrowse link
G Scn1a sodium voltage-gated channel alpha subunit 1 located_in IEA
ISO
GO_REF:0000107
(MGI:3712711|PMID:17537961)
Ensembl
RGD
PMID:17537961 GO_REF:0000107 MGI:3712711 NCBI chr 3:50,952,790...51,071,804
Ensembl chr 3:50,952,791...51,071,699
JBrowse link
G Scn1b sodium voltage-gated channel beta subunit 1 colocalizes_with
located_in
IDA
IEA
ISO
PMID:11470829
GO_REF:0000107
(MGI:3042560|PMID:15102918)
Ensembl
RGD
PMID:15102918 PMID:11470829 GO_REF:0000107 MGI:3042560, RGD:13825432 NCBI chr 1:86,353,917...86,363,836
Ensembl chr 1:86,353,917...86,363,739
JBrowse link
G Scn2a sodium voltage-gated channel alpha subunit 2 located_in IDA PMID:16652168 BHF-UCL PMID:16652168 RGD:8553545 NCBI chr 3:50,302,781...50,437,504
Ensembl chr 3:50,302,877...50,437,214
JBrowse link
G Scn8a sodium voltage-gated channel alpha subunit 8 located_in IDA
ISO
PMID:16652168
(MGI:2181223|PMID:11807096)
RGD PMID:11807096 PMID:16652168 MGI:2181223, RGD:8553545 NCBI chr 7:131,982,152...132,156,075
Ensembl chr 7:131,982,480...132,151,292
JBrowse link
G Spock1 sparc/osteonectin, cwcv and kazal like domains proteoglycan 1 located_in ISO (MGI:2667547|PMID:10842087) RGD PMID:10842087 MGI:2667547 NCBI chr17:6,741,504...7,221,685
Ensembl chr17:6,742,273...7,224,935
JBrowse link
G Sptbn4 spectrin, beta, non-erythrocytic 4 located_in
is_active_in
IDA
ISO
MMO:0000538
(MGI:2181223|PMID:11807096)
MGI:1856134 (MGI:3624505|PMID:16687515)
PMID:11086001
RGD PMID:11807096 PMID:16687515 PMID:17709431 PMID:11086001 MGI:2181223 MGI:3624505, RGD:14392774, RGD:8553353 NCBI chr 1:82,650,750...82,738,345
Ensembl chr 1:82,650,751...82,737,228
JBrowse link
paranode region of axon term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ank3 ankyrin 3 located_in ISO (MGI:4839704|PMID:20188654) RGD PMID:20188654 MGI:4839704 NCBI chr20:18,602,267...19,225,831
Ensembl chr20:18,602,786...19,086,300
JBrowse link
G Cldn5 claudin 5 IDA RGD PMID:12403818 RGD:634852 NCBI chr11:82,212,822...82,214,248 JBrowse link
G Cntnap1 contactin associated protein 1 located_in IDA
ISO
PMID:10624965
(MGI:2675529|PMID:12975355), (MGI:3042560|PMID:15102918), (MGI:3621602|PMID:16551741), (MGI:4839704|PMID:20188654), (MGI:5613863|PMID:25378149)
RGD PMID:12975355 PMID:15102918 PMID:16551741 PMID:20188654 PMID:25378149 More... MGI:2675529 MGI:3042560 MGI:3621602 MGI:4839704 MGI:5613863, RGD:8554062 NCBI chr10:86,109,850...86,125,612
Ensembl chr10:86,111,643...86,125,611
JBrowse link
G Cntnap2 contactin associated protein 2 IDA RGD PMID:10624965 RGD:8554062 NCBI chr 4:74,109,455...76,366,434
Ensembl chr 4:74,109,472...76,362,027
JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 located_in IDA PMID:19587293 MGI PMID:19587293 RGD:10400858 NCBI chr11:68,911,883...69,103,230
Ensembl chr11:68,911,883...69,102,689
JBrowse link
G Epb41l3 erythrocyte membrane protein band 4.1-like 3 located_in IDA
ISO
(MGI:2675529|PMID:12975355), (MGI:3621602|PMID:16551741), (MGI:5296417|PMID:21966409) RGD PMID:12975355 PMID:16551741 PMID:21966409 PMID:11146105 MGI:2675529 MGI:3621602 MGI:5296417, RGD:11252103 NCBI chr 9:109,056,178...109,260,607
Ensembl chr 9:109,016,113...109,260,607
JBrowse link
G Ermn ermin located_in
is_active_in
ISO
IBA
(PMID:20934411)
PMID:21873635
(MGI:3612229|PMID:16421295)
RGD PMID:16421295 PMID:20934411 PMID:21873635 MGI:3612229, RGD:13792537 NCBI chr 3:42,628,160...42,633,816
Ensembl chr 3:42,626,309...42,633,744
JBrowse link
G Gjc2 gap junction protein, gamma 2 IDA RGD PMID:16203097 RGD:13208516 NCBI chr10:43,962,642...43,971,358
Ensembl chr10:43,962,642...43,970,467
JBrowse link
G Kcna1 potassium voltage-gated channel subfamily A member 1 located_in
is_active_in
ISO
IBA
IDA
(PMID:11086297)
PMID:21873635
(MGI:67695|PMID:8046438)
RGD PMID:8046438 PMID:11086297 PMID:21873635 PMID:11086297 MGI:67695, RGD:13792537, RGD:10047340 NCBI chr 4:159,464,223...159,472,905
Ensembl chr 4:159,464,188...159,472,682
JBrowse link
G Kif13b kinesin family member 13B located_in IDA PMID:19587293 MGI PMID:19587293 RGD:10400858 NCBI chr15:38,908,318...39,062,849
Ensembl chr15:38,924,624...39,084,879
JBrowse link
G Mag myelin-associated glycoprotein located_in ISO (MGI:2675529|PMID:12975355), (MGI:5800352|PMID:27583434) RGD PMID:12975355 PMID:27583434 MGI:2675529 MGI:5800352 NCBI chr 1:86,148,227...86,163,726
Ensembl chr 1:86,148,228...86,163,656
JBrowse link
G Ncmap noncompact myelin associated protein located_in
is_active_in
IDA
IBA
IEA
PMID:18650334
PMID:21873635
GO_REF:0000002
InterPro PMID:18650334 PMID:21873635 GO_REF:0000002, RGD:8554263, RGD:13792537 NCBI chr 5:147,608,042...147,623,266
Ensembl chr 5:147,610,677...147,618,775
JBrowse link
G Nfasc neurofascin located_in ISO (MGI:2675529|PMID:12975355), (MGI:3625634|PMID:16723544) RGD PMID:12975355 PMID:16723544 MGI:2675529 MGI:3625634 NCBI chr13:43,997,223...44,183,863
Ensembl chr13:43,997,224...44,183,880
JBrowse link
G Scn2a sodium voltage-gated channel alpha subunit 2 located_in IEA
ISO
GO_REF:0000107
(MGI:3625634|PMID:16723544)
Ensembl
RGD
PMID:16723544 GO_REF:0000107 MGI:3625634 NCBI chr 3:50,302,781...50,437,504
Ensembl chr 3:50,302,877...50,437,214
JBrowse link
G Sirt2 sirtuin 2 located_in IDA PMID:17344398 UniProt PMID:17344398 RGD:8553877 NCBI chr 1:84,053,883...84,076,975
Ensembl chr 1:84,052,903...84,076,975
JBrowse link
G Sptan1 spectrin, alpha, non-erythrocytic 1 located_in ISO (MGI:3621602|PMID:16551741) RGD PMID:16551741 MGI:3621602 NCBI chr 3:13,241,164...13,306,047
Ensembl chr 3:13,241,217...13,306,046
JBrowse link
G Sptbn4 spectrin, beta, non-erythrocytic 4 located_in ISO (MGI:4839704|PMID:20188654) RGD PMID:20188654 MGI:4839704 NCBI chr 1:82,650,750...82,738,345
Ensembl chr 1:82,650,751...82,737,228
JBrowse link
varicosity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bin1 bridging integrator 1 IDA RGD PMID:9348539 RGD:631926 NCBI chr18:24,009,731...24,067,267
Ensembl chr18:24,009,653...24,067,263
JBrowse link
G Cadm1 cell adhesion molecule 1 located_in ISO (MGI:5009720|PMID:21482734) RGD PMID:21482734 MGI:5009720 NCBI chr 8:47,847,836...48,178,703
Ensembl chr 8:47,847,325...48,182,833
JBrowse link
G Cd40 CD40 molecule IDA RGD PMID:25972624 RGD:11344972 NCBI chr 3:153,790,372...153,805,279
Ensembl chr 3:153,790,449...153,805,534
JBrowse link
G Crh corticotropin releasing hormone IDA RGD PMID:15796765 RGD:5508814 NCBI chr 2:102,143,055...102,144,919
Ensembl chr 2:102,143,055...102,144,919
JBrowse link
G Crhbp corticotropin releasing hormone binding protein IDA RGD PMID:10524337 RGD:5490549 NCBI chr 2:26,692,403...26,704,710
Ensembl chr 2:26,692,403...26,704,710
JBrowse link
G Crhr2 corticotropin releasing hormone receptor 2 IDA RGD PMID:21481539 RGD:5490967 NCBI chr 4:84,222,897...84,265,924
Ensembl chr 4:84,224,002...84,265,904
JBrowse link
G Dagla diacylglycerol lipase, alpha located_in ISO (MGI:4837552|PMID:20962221) RGD PMID:20962221 MGI:4837552 NCBI chr 1:206,890,635...206,947,332
Ensembl chr 1:206,890,638...206,947,232
JBrowse link
G Dbh dopamine beta-hydroxylase IDA RGD PMID:19651110 RGD:5129482 NCBI chr 3:10,488,260...10,505,245
Ensembl chr 3:10,488,260...10,505,248
JBrowse link
G Dnm1 dynamin 1 IDA RGD PMID:12646135 RGD:8554278 NCBI chr 3:15,604,782...15,648,654
Ensembl chr 3:15,604,784...15,648,538
JBrowse link
G Map1b microtubule-associated protein 1B IDA RGD PMID:11733546 RGD:2304025 NCBI chr 2:30,817,261...30,910,458
Ensembl chr 2:30,817,261...30,910,317
JBrowse link
G Mgll monoglyceride lipase located_in ISO (MGI:4837552|PMID:20962221) RGD PMID:20962221 MGI:4837552 NCBI chr 4:121,192,187...121,294,187
Ensembl chr 4:121,192,195...121,294,179
JBrowse link
G Pnmt phenylethanolamine-N-methyltransferase IDA RGD PMID:19651110 RGD:5129482 NCBI chr10:83,383,019...83,386,557
Ensembl chr10:83,384,923...83,386,556
JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B IDA RGD PMID:20715153 RGD:5130921 NCBI chr 5:157,070,642...157,104,216
Ensembl chr 5:157,070,642...157,104,206
JBrowse link
G Trpm7 transient receptor potential cation channel, subfamily M, member 7 IDA RGD PMID:17088214 RGD:5684965 NCBI chr 3:114,046,258...114,134,799
Ensembl chr 3:114,046,258...114,135,190
JBrowse link
G Ucn urocortin IDA RGD PMID:15796765 RGD:5508814 NCBI chr 6:25,238,120...25,238,950
Ensembl chr 6:25,238,120...25,238,950
JBrowse link
G Ucn3 urocortin 3 IDA RGD PMID:11826127 RGD:70818 NCBI chr17:66,309,952...66,315,571
Ensembl chr17:66,309,371...66,315,990
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19676
      main axon 87
        axolemma 22
        axon initial segment 27
        internode region of axon 4
        juxtaparanode region of axon 10
        node of Ranvier 19
        paranode region of axon 17
        varicosity 16
Path 2
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19676
      cell projection 2594
        plasma membrane bounded cell projection 2519
          neuron projection 1677
            axon 854
              main axon 87
                axolemma 22
                axon initial segment 27
                internode region of axon 4
                juxtaparanode region of axon 10
                node of Ranvier 19
                paranode region of axon 17
                varicosity 16
paths to the root