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ONTOLOGY REPORT - ANNOTATIONS


Term:main axon
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Accession:GO:0044304 term browser browse the term
Definition:The main axonal trunk, as opposed to the collaterals; i.e., excluding collaterals, terminal, spines, or dendrites.
Synonyms:exact_synonym: axon trunk
 related_synonym: axon shaft;   axonal shaft
 xref: NIF_Subcellular:sao1596975044


show annotations for term's descendants           Sort by:
 
main axon term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apbb1 amyloid beta precursor protein binding family B member 1 IDA RGD PMID:12843239 RGD:10053998 NCBI chr 1:170,387,625...170,411,263
Ensembl chr 1:170,387,609...170,404,056
JBrowse link
G App amyloid beta precursor protein IDA RGD PMID:12843239 RGD:10053998 NCBI chr11:24,425,013...24,641,872
Ensembl chr11:24,425,005...24,641,858
JBrowse link
G Map2 microtubule-associated protein 2 NOT IDA PMID:3517689 ARUK-UCL PMID:3517689 RGD:13514082 NCBI chr 9:73,204,753...73,462,965
Ensembl chr 9:73,319,710...73,462,972
JBrowse link
G Mapt microtubule-associated protein tau IDA PMID:2509111 RGD
ARUK-UCL
PMID:8795614, PMID:2509111 RGD:10412707, RGD:13514077 NCBI chr10:92,289,002...92,386,517
Ensembl chr10:92,288,910...92,386,517
JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 IEA
ISO
ISS
GO_REF:0000107
(PMID:27723745)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:27723745 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:50,666,444...50,691,523
Ensembl chr 5:50,668,040...50,684,409
JBrowse link
G Tiam1 TIAM Rac1 associated GEF 1 IDA RGD PMID:11264310 RGD:10043321 NCBI chr11:29,931,083...30,061,173
Ensembl chr11:29,933,163...30,051,103
JBrowse link
G Trim46 tripartite motif-containing 46 IDA
ISO
PMID:28426968
(MGI:6148385|PMID:28426968)
RGD PMID:28426968, PMID:28426968 MGI:6148385, RGD:13514087 NCBI chr 2:188,548,608...188,561,617
Ensembl chr 2:188,548,644...188,561,360
JBrowse link
axolemma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase ISO RGD RGD:11560526 NCBI chr12:22,472,358...22,477,052
Ensembl chr12:22,472,358...22,478,753
JBrowse link
G Adora1 adenosine A1 receptor IDA RGD PMID:16481441 RGD:1625231 NCBI chr13:51,042,111...51,076,913
Ensembl chr13:51,042,248...51,076,852
JBrowse link
G Adora2a adenosine A2a receptor IDA RGD PMID:16481441 RGD:1625231 NCBI chr20:14,265,251...14,282,873
Ensembl chr20:14,265,252...14,282,873
JBrowse link
G Ank1 ankyrin 1 IDA RGD PMID:2139035 RGD:1599113 NCBI chr16:73,681,422...73,912,605
Ensembl chr16:73,681,422...73,827,488
JBrowse link
G Chrna7 cholinergic receptor nicotinic alpha 7 subunit IEA
ISO
GO_REF:0000107
(MGI:3796800|PMID:18458158)
Ensembl
RGD
PMID:18458158 GO_REF:0000107 MGI:3796800 NCBI chr 1:123,897,341...124,039,263
Ensembl chr 1:123,899,657...124,039,196
JBrowse link
G Cntnap2 contactin associated protein 2 ISO
IDA
(PMID:19706678) RGD PMID:19706678, PMID:10624965 RGD:8554062 NCBI chr 4:74,700,539...77,025,463 JBrowse link
G Epb41l3 erythrocyte membrane protein band 4.1-like 3 colocalizes_with ISO (MGI:5296417|PMID:21966409) RGD PMID:21966409 MGI:5296417 NCBI chr 9:117,314,935...117,666,408
Ensembl chr 9:117,538,009...117,666,410
JBrowse link
G Gabbr1 gamma-aminobutyric acid type B receptor subunit 1 IDA RGD PMID:17924569 RGD:2315465 NCBI chr20:1,955,344...1,984,907
Ensembl chr20:1,955,359...1,984,863
JBrowse link
G Kcnc1 potassium voltage-gated channel subfamily C member 1 ISO (MGI:3814977|PMID:18682278) RGD PMID:18682278 MGI:3814977 NCBI chr 1:102,414,352...102,456,718
Ensembl chr 1:102,414,625...102,456,411
JBrowse link
G Kcnc2 potassium voltage-gated channel subfamily C member 2 IDA RGD PMID:15488478 RGD:9685742 NCBI chr 7:54,978,453...55,159,362
Ensembl chr 7:54,980,120...55,159,351
JBrowse link
G Kcnc3 potassium voltage-gated channel subfamily C member 3 ISO (MGI:3814977|PMID:18682278) RGD PMID:18682278 MGI:3814977 NCBI chr 1:100,593,453...100,607,874
Ensembl chr 1:100,593,680...100,607,874
JBrowse link
G Kcnh1 potassium voltage-gated channel subfamily H member 1 IDA RGD PMID:20111597 RGD:9693719 NCBI chr13:110,920,712...111,232,291
Ensembl chr13:110,920,737...111,232,269
JBrowse link
G Kcnj11 potassium inwardly-rectifying channel, subfamily J, member 11 IDA RGD PMID:20102598 RGD:7296980 NCBI chr 1:102,103,093...102,107,134
Ensembl chr 1:102,103,094...102,106,127
JBrowse link
G Mapk8ip3 mitogen-activated protein kinase 8 interacting protein 3 ISO (MGI:3629289|PMID:16606357) RGD PMID:16606357 MGI:3629289 NCBI chr10:14,259,394...14,299,276
Ensembl chr10:14,260,787...14,299,167
JBrowse link
G Mapt microtubule-associated protein tau ISO
IEA
(PMID:10747907)
GO_REF:0000107
RGD
Ensembl
PMID:10747907 GO_REF:0000107 NCBI chr10:92,289,002...92,386,517
Ensembl chr10:92,288,910...92,386,517
JBrowse link
G Myo1d myosin ID IDA RGD PMID:15809075 RGD:2314421 NCBI chr10:67,866,939...68,142,864
Ensembl chr10:67,866,940...68,142,864
JBrowse link
G Nrg1 neuregulin 1 ISO (MGI:3796800|PMID:18458158) RGD PMID:18458158 MGI:3796800 NCBI chr16:62,969,573...64,065,063
Ensembl chr16:63,837,216...64,057,434
JBrowse link
G Robo1 roundabout guidance receptor 1 ISO (MGI:3040153|PMID:15084255) RGD PMID:15084255 MGI:3040153 NCBI chr11:9,079,291...10,146,302
Ensembl chr11:9,642,365...10,143,317
JBrowse link
G Robo2 roundabout guidance receptor 2 ISO (MGI:3040153|PMID:15084255) RGD PMID:15084255 MGI:3040153 NCBI chr11:11,062,866...12,618,793
Ensembl chr11:11,062,790...11,585,765
JBrowse link
G Slc1a2 solute carrier family 1 member 2 ISO (MGI:1275841|PMID:9671661) RGD PMID:9671661 MGI:1275841 NCBI chr 3:92,518,679...92,665,731
Ensembl chr 3:92,640,752...92,665,644
JBrowse link
G Sptbn1 spectrin, beta, non-erythrocytic 1 ISO (MGI:5296417|PMID:21966409) RGD PMID:21966409 MGI:5296417 NCBI chr14:114,517,839...114,700,199
Ensembl chr14:114,518,816...114,692,764
JBrowse link
G Thy1 Thy-1 cell surface antigen IDA PMID:22479590 UniProt PMID:22479590 RGD:12793046 NCBI chr 8:48,382,121...48,387,271
Ensembl chr 8:48,382,121...48,386,935
JBrowse link
axon initial segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ank3 ankyrin 3 IDA
ISO
IEA
IMP
(MGI:4837024|PMID:20877009), (MGI:5426783|PMID:11724816), (MGI:5708763|PMID:26671463), (MGI:5883190|PMID:27356871), (MGI:6212949|PMID:25950943)
GO_REF:0000107
PMID:28426968
(PMID:27356871)
RGD
Ensembl
PMID:11724816 PMID:20877009 PMID:25950943 PMID:26671463 PMID:27356871, PMID:21551097, PMID:25950943, PMID:28426968, PMID:11724816 GO_REF:0000107 MGI:4837024 MGI:5426783 MGI:5708763 MGI:5883190 MGI:6212949, RGD:6767287, RGD:13800538, RGD:13514087, RGD:8553674 NCBI chr20:19,948,767...20,480,628
Ensembl chr20:20,105,047...20,480,623
JBrowse link
G Bcan brevican IDA MMO:0000538 RGD PMID:17709431 RGD:14392774 NCBI chr 2:187,359,674...187,373,133
Ensembl chr 2:187,359,677...187,372,657
JBrowse link
G Bin1 bridging integrator 1 IDA PMID:9182667 Alzheimers_University_of_Toronto PMID:9182667 RGD:8553847 NCBI chr18:25,163,575...25,222,139
Ensembl chr18:25,163,561...25,222,135
JBrowse link
G Camk2d calcium/calmodulin-dependent protein kinase II delta ISO (MGI:4837024|PMID:20877009) RGD PMID:20877009 MGI:4837024 NCBI chr 2:230,900,907...231,132,207
Ensembl chr 2:230,901,126...231,132,039
JBrowse link
G Cck cholecystokinin IDA nonpyramidal neurons in the basolateral amygdalar complex after colchicine treatment RGD PMID:12763251 RGD:1626094 NCBI chr 8:130,120,525...130,127,515
Ensembl chr 8:130,120,523...130,127,392
JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 IDA RGD PMID:18434027 RGD:6902905 NCBI chr 9:43,807,412...43,858,225
Ensembl chr 9:43,807,677...43,854,396
JBrowse link
G Kcnq2 potassium voltage-gated channel subfamily Q member 2 ISO
IBA
(MGI:3617955|PMID:16525039)
PMID:21873635
RGD PMID:16525039, PMID:21873635 MGI:3617955, RGD:13792537 NCBI chr 3:176,585,897...176,645,029
Ensembl chr 3:176,589,906...176,644,951
JBrowse link
G Kcnq3 potassium voltage-gated channel subfamily Q member 3 IDA
IBA
ISO
IEA
PMID:21873635
(MGI:3617955|PMID:16525039)
GO_REF:0000107
RGD
Ensembl
PMID:16525039, PMID:24333508, PMID:21873635 GO_REF:0000107 MGI:3617955, RGD:9686369, RGD:13792537 NCBI chr 7:106,714,479...107,009,639
Ensembl chr 7:106,717,229...107,009,330
JBrowse link
G Lrrc7 leucine rich repeat containing 7 IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:8824323, PMID:21873635 RGD:1299511, RGD:13792537 NCBI chr 2:264,910,594...265,300,860
Ensembl chr 2:264,910,594...265,300,868
JBrowse link
G Map1a microtubule-associated protein 1A ISO (MGI:5632407|PMID:25788676) RGD PMID:25788676 MGI:5632407 NCBI chr 3:113,251,918...113,272,193
Ensembl chr 3:113,251,778...113,272,186
JBrowse link
G Map2 microtubule-associated protein 2 IEA
ISO
IDA
GO_REF:0000107
(MGI:6148385|PMID:28426968)
Ensembl
RGD
PMID:28426968, PMID:28426968 GO_REF:0000107 MGI:6148385, RGD:13514087 NCBI chr 9:73,204,753...73,462,965
Ensembl chr 9:73,319,710...73,462,972
JBrowse link
G Nav1 neuron navigator 1 ISO
IBA
(MGI:5708763|PMID:26671463)
PMID:21873635
RGD PMID:26671463, PMID:21873635 MGI:5708763, RGD:13792537 NCBI chr13:52,260,474...52,515,016
Ensembl chr13:52,267,254...52,514,875
JBrowse link
G Nfasc neurofascin IDA
ISO
PMID:11724816
(MGI:5708763|PMID:26671463)
PMID:28426968
PMID:27356871
RGD PMID:26671463, PMID:11724816, PMID:28426968, PMID:22649224, PMID:27356871 MGI:5708763, RGD:8553674, RGD:13514087, RGD:12904752, RGD:12793037 NCBI chr13:49,335,407...49,522,474
Ensembl chr13:49,335,408...49,522,415
JBrowse link
G Nrcam neuronal cell adhesion molecule IDA PMID:11724816
MMO:0000538
BHF-UCL
RGD
PMID:11724816, PMID:17709431 RGD:8553674, RGD:14392774 NCBI chr 6:64,297,843...64,867,408
Ensembl chr 6:64,297,888...64,864,996
JBrowse link
G Scn1a sodium voltage-gated channel alpha subunit 1 IEA
ISO
GO_REF:0000107
(MGI:3712711|PMID:17537961)
Ensembl
RGD
PMID:17537961 GO_REF:0000107 MGI:3712711 NCBI chr 3:52,388,811...52,533,365
Ensembl chr 3:52,381,975...52,510,507
JBrowse link
G Scn2a sodium voltage-gated channel alpha subunit 2 IDA RGD PMID:12036953 RGD:625497 NCBI chr 3:51,687,910...51,822,008
Ensembl chr 3:51,687,809...51,822,250
JBrowse link
G Scn8a sodium voltage-gated channel alpha subunit 8 IDA PMID:11724816 BHF-UCL PMID:11724816 RGD:8553674 NCBI chr 7:142,575,629...142,683,659
Ensembl chr 7:142,575,672...142,684,114
JBrowse link
G Sptbn4 spectrin, beta, non-erythrocytic 4 IDA
ISO
PMID:11086001
(MGI:2181223|PMID:11807096), (MGI:4837024|PMID:20877009), (MGI:5708763|PMID:26671463), (MGI:5883190|PMID:27356871)
MMO:0000538
PMID:28426968
RGD PMID:11807096 PMID:20877009 PMID:26671463 PMID:27356871, PMID:11086001, PMID:17709431, PMID:28426968 MGI:2181223 MGI:4837024 MGI:5708763 MGI:5883190, RGD:8553353, RGD:14392774, RGD:13514087 NCBI chr 1:84,168,494...84,254,679
Ensembl chr 1:84,168,495...84,254,645
JBrowse link
G Trim46 tripartite motif-containing 46 ISO (MGI:5708763|PMID:26671463) RGD PMID:26671463 MGI:5708763 NCBI chr 2:188,548,608...188,561,617
Ensembl chr 2:188,548,644...188,561,360
JBrowse link
internode region of axon term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ermn ermin ISO
IBA
(PMID:20934411)
PMID:21873635
(MGI:3612229|PMID:16421295)
RGD PMID:16421295 PMID:20934411, PMID:21873635 MGI:3612229, RGD:13792537 NCBI chr 3:44,080,350...44,086,006
Ensembl chr 3:44,068,057...44,086,022
JBrowse link
G Mbp myelin basic protein ISO
IBA
(MGI:3612229|PMID:16421295)
PMID:21873635
RGD PMID:16421295, PMID:21873635 MGI:3612229, RGD:13792537 NCBI chr18:79,326,738...79,437,310
Ensembl chr18:79,326,738...79,437,310
JBrowse link
G Pard3 par-3 family cell polarity regulator ISS
ISO
GO_REF:0000024
(MGI:5295137|PMID:21949390)
UniProt
RGD
PMID:21949390 GO_REF:0000024 MGI:5295137 NCBI chr19:60,017,746...60,580,628
Ensembl chr19:60,017,746...60,580,651
JBrowse link
G Tubb4a tubulin, beta 4A class IVa ISO (MGI:3612229|PMID:16421295) RGD PMID:16421295 MGI:3612229 NCBI chr 9:9,961,020...9,968,420
Ensembl chr 9:9,961,021...9,968,486
JBrowse link
juxtaparanode region of axon term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cntn2 contactin 2 IEA
ISO
GO_REF:0000107
(MGI:2675531|PMID:12963709)
Ensembl
RGD
PMID:12963709 GO_REF:0000107 MGI:2675531 NCBI chr13:49,280,913...49,314,061
Ensembl chr13:49,285,310...49,313,940
JBrowse link
G Cntnap2 contactin associated protein 2 IDA
ISO
(MGI:2675529|PMID:12975355), (MGI:2675531|PMID:12963709), (MGI:3721176|PMID:11567047), (MGI:3821526|PMID:18760366), (MGI:5613863|PMID:25378149) RGD PMID:11567047 PMID:12963709 PMID:12975355 PMID:18760366 PMID:25378149, PMID:10624965 MGI:2675529 MGI:2675531 MGI:3721176 MGI:3821526 MGI:5613863, RGD:8554062 NCBI chr 4:74,700,539...77,025,463 JBrowse link
G Dlg2 discs large MAGUK scaffold protein 2 IDA
ISO
IEA
PMID:19109503
(MGI:3829295|PMID:19109503)
GO_REF:0000107
PMID:20089912
RGD
Ensembl
PMID:19109503, PMID:19109503, PMID:20089912 GO_REF:0000107 MGI:3829295, RGD:8554606, RGD:10047376 NCBI chr 1:154,916,274...157,274,077
Ensembl chr 1:156,552,328...157,269,747
JBrowse link
G Dlg4 discs large MAGUK scaffold protein 4 IDA
ISO
IEA
PMID:19109503
(MGI:3829295|PMID:19109503)
GO_REF:0000107
PMID:20089912
RGD
Ensembl
PMID:19109503, PMID:19109503, PMID:20089912 GO_REF:0000107 MGI:3829295, RGD:8554606, RGD:10047376 NCBI chr10:56,625,845...56,655,543
Ensembl chr10:56,627,411...56,653,599
JBrowse link
G Epb41l3 erythrocyte membrane protein band 4.1-like 3 ISO (MGI:2675529|PMID:12975355), (MGI:3621602|PMID:16551741), (MGI:5296417|PMID:21966409) RGD PMID:12975355 PMID:16551741 PMID:21966409 MGI:2675529 MGI:3621602 MGI:5296417 NCBI chr 9:117,314,935...117,666,408
Ensembl chr 9:117,538,009...117,666,410
JBrowse link
G Kcna1 potassium voltage-gated channel subfamily A member 1 IDA
IBA
ISO
PMID:11086297
PMID:21873635
(MGI:2675531|PMID:12963709), (MGI:3821526|PMID:18760366), (MGI:5607246|PMID:8361541)
(PMID:11086297)
RGD PMID:8361541 PMID:11086297 PMID:12963709 PMID:18760366, PMID:11086297, PMID:21873635 MGI:2675531 MGI:3821526 MGI:5607246, RGD:10047340, RGD:13792537 NCBI chr 4:159,190,781...159,192,526
Ensembl chr 4:159,190,804...159,192,526
JBrowse link
G Kcna2 potassium voltage-gated channel subfamily A member 2 IDA
IBA
ISO
PMID:10624965
PMID:21873635
(MGI:2675531|PMID:12963709), (MGI:3042560|PMID:15102918), (MGI:3617955|PMID:16525039), (MGI:3821526|PMID:18760366), (MGI:5613863|PMID:25378149)
PMID:20089912
RGD PMID:12963709 PMID:15102918 PMID:16525039 PMID:18760366 PMID:25378149, PMID:10624965, PMID:21873635, PMID:20089912 MGI:2675531 MGI:3042560 MGI:3617955 MGI:3821526 MGI:5613863, RGD:8554062, RGD:13792537, RGD:10047376 NCBI chr 2:209,838,607...209,852,471
Ensembl chr 2:209,838,869...209,852,471
JBrowse link
G Kcnab1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:8756417, PMID:21873635 RGD:9743934, RGD:13792537 NCBI chr 2:155,555,798...156,011,438
Ensembl chr 2:155,718,359...156,009,526
JBrowse link
G Kcnab2 potassium voltage-gated channel subfamily A regulatory beta subunit 2 IDA
IBA
ISO
IEA
PMID:9334400
PMID:21873635
(MGI:2178002|PMID:11825900), (MGI:2675531|PMID:12963709)
(PMID:11086297)
GO_REF:0000107
RGD
Ensembl
PMID:11086297 PMID:11825900 PMID:12963709, PMID:9334400, PMID:21873635 GO_REF:0000107 MGI:2178002 MGI:2675531, RGD:10047182, RGD:13792537 NCBI chr 5:169,570,327...169,658,875
Ensembl chr 5:169,572,517...169,658,875
JBrowse link
G Sirt2 sirtuin 2 IDA PMID:17344398 UniProt PMID:17344398 RGD:8553877 NCBI chr 1:86,948,866...86,971,954
Ensembl chr 1:86,948,918...86,971,952
JBrowse link
node of Ranvier term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ank3 ankyrin 3 IDA
ISO
(MGI:5426783|PMID:11724816), (MGI:6148385|PMID:28426968)
MMO:0000538
RGD PMID:11724816 PMID:28426968, PMID:17548513, PMID:17709431, PMID:28426968 MGI:5426783 MGI:6148385, RGD:6767298, RGD:14392774, RGD:13514087 NCBI chr20:19,948,767...20,480,628
Ensembl chr20:20,105,047...20,480,623
JBrowse link
G Bcan brevican IDA MMO:0000538 RGD PMID:17709431 RGD:14392774 NCBI chr 2:187,359,674...187,373,133
Ensembl chr 2:187,359,677...187,372,657
JBrowse link
G Bin1 bridging integrator 1 IDA PMID:9182667 Alzheimers_University_of_Toronto PMID:9182667 RGD:8553847 NCBI chr18:25,163,575...25,222,139
Ensembl chr18:25,163,561...25,222,135
JBrowse link
G Cdh1 cadherin 1 ISO (MGI:4441217|PMID:20237282) RGD PMID:20237282 MGI:4441217 NCBI chr19:38,768,467...38,838,395
Ensembl chr19:38,768,467...38,838,395
JBrowse link
G Cntn2 contactin 2 IEA
ISO
GO_REF:0000107
(MGI:2675531|PMID:12963709)
Ensembl
RGD
PMID:12963709 GO_REF:0000107 MGI:2675531 NCBI chr13:49,280,913...49,314,061
Ensembl chr13:49,285,310...49,313,940
JBrowse link
G Dag1 dystroglycan 1 ISO (MGI:2663553|PMID:12797959) RGD PMID:12797959 MGI:2663553 NCBI chr 8:116,980,501...116,993,182
Ensembl chr 8:116,980,497...116,993,193
JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 IEA
ISO
GO_REF:0000107
(MGI:4441217|PMID:20237282)
Ensembl
RGD
PMID:20237282 GO_REF:0000107 MGI:4441217 NCBI chr11:72,164,566...72,378,895
Ensembl chr11:72,163,749...72,378,895
JBrowse link
G Kcnq2 potassium voltage-gated channel subfamily Q member 2 ISO (MGI:3617955|PMID:16525039) RGD PMID:16525039 MGI:3617955 NCBI chr 3:176,585,897...176,645,029
Ensembl chr 3:176,589,906...176,644,951
JBrowse link
G Kcnq3 potassium voltage-gated channel subfamily Q member 3 IEA
ISO
GO_REF:0000107
(MGI:3617955|PMID:16525039)
Ensembl
RGD
PMID:16525039 GO_REF:0000107 MGI:3617955 NCBI chr 7:106,714,479...107,009,639
Ensembl chr 7:106,717,229...107,009,330
JBrowse link
G Myoc myocilin IEA
ISO
ISS
GO_REF:0000107
(MGI:5527213|PMID:23897819)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:23897819 GO_REF:0000024 GO_REF:0000107 MGI:5527213 NCBI chr13:80,517,531...80,527,928
Ensembl chr13:80,517,536...80,527,928
JBrowse link
G Nfasc neurofascin colocalizes_with IDA
ISO
PMID:16652168
(MGI:3836161|PMID:19185024), (MGI:5629915|PMID:25653379)
MMO:0000538
PMID:11470829
RGD PMID:19185024 PMID:25653379, PMID:16652168, PMID:17709431, PMID:11470829 MGI:3836161 MGI:5629915, RGD:8553545, RGD:14392774, RGD:13825432 NCBI chr13:49,335,407...49,522,474
Ensembl chr13:49,335,408...49,522,415
JBrowse link
G Nrcam neuronal cell adhesion molecule IDA MMO:0000538 RGD PMID:17709431 RGD:14392774 NCBI chr 6:64,297,843...64,867,408
Ensembl chr 6:64,297,888...64,864,996
JBrowse link
G Scn1a sodium voltage-gated channel alpha subunit 1 IEA
ISO
GO_REF:0000107
(MGI:3712711|PMID:17537961)
Ensembl
RGD
PMID:17537961 GO_REF:0000107 MGI:3712711 NCBI chr 3:52,388,811...52,533,365
Ensembl chr 3:52,381,975...52,510,507
JBrowse link
G Scn1b sodium voltage-gated channel beta subunit 1 colocalizes_with IDA
ISO
PMID:11470829
(MGI:3042560|PMID:15102918)
RGD PMID:15102918, PMID:11470829 MGI:3042560, RGD:13825432 NCBI chr 1:89,550,738...89,560,469
Ensembl chr 1:89,550,738...89,560,719
JBrowse link
G Scn2a sodium voltage-gated channel alpha subunit 2 IDA PMID:16652168 BHF-UCL PMID:16652168 RGD:8553545 NCBI chr 3:51,687,910...51,822,008
Ensembl chr 3:51,687,809...51,822,250
JBrowse link
G Scn8a sodium voltage-gated channel alpha subunit 8 IDA
ISO
PMID:16652168
(MGI:2181223|PMID:11807096)
RGD PMID:11807096, PMID:16652168 MGI:2181223, RGD:8553545 NCBI chr 7:142,575,629...142,683,659
Ensembl chr 7:142,575,672...142,684,114
JBrowse link
G Spock1 sparc/osteonectin, cwcv and kazal like domains proteoglycan 1 ISO (MGI:2667547|PMID:10842087) RGD PMID:10842087 MGI:2667547 NCBI chr17:7,675,531...7,797,863
Ensembl chr17:7,675,531...7,797,863
JBrowse link
G Sptbn4 spectrin, beta, non-erythrocytic 4 IDA
ISO
PMID:11086001
(MGI:2181223|PMID:11807096)
MMO:0000538
RGD PMID:11807096, PMID:11086001, PMID:17709431 MGI:2181223, RGD:8553353, RGD:14392774 NCBI chr 1:84,168,494...84,254,679
Ensembl chr 1:84,168,495...84,254,645
JBrowse link
paranode region of axon term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ank3 ankyrin 3 ISO (MGI:4839704|PMID:20188654) RGD PMID:20188654 MGI:4839704 NCBI chr20:19,948,767...20,480,628
Ensembl chr20:20,105,047...20,480,623
JBrowse link
G Cldn5 claudin 5 IDA RGD PMID:12403818 RGD:634852 NCBI chr11:86,356,292...86,357,718
Ensembl chr11:86,356,294...86,357,718
JBrowse link
G Cntnap1 contactin associated protein 1 IDA
ISO
PMID:10624965
(MGI:2675529|PMID:12975355), (MGI:3042560|PMID:15102918), (MGI:3621602|PMID:16551741), (MGI:4839704|PMID:20188654), (MGI:5613863|PMID:25378149)
RGD PMID:12975355 PMID:15102918 PMID:16551741 PMID:20188654 PMID:25378149, PMID:10624965 MGI:2675529 MGI:3042560 MGI:3621602 MGI:4839704 MGI:5613863, RGD:8554062 NCBI chr10:89,087,904...89,103,615
Ensembl chr10:89,089,646...89,103,614
JBrowse link
G Cntnap2 contactin associated protein 2 IDA RGD PMID:10624965 RGD:8554062 NCBI chr 4:74,700,539...77,025,463 JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 IDA PMID:19587293 MGI PMID:19587293 RGD:10400858 NCBI chr11:72,164,566...72,378,895
Ensembl chr11:72,163,749...72,378,895
JBrowse link
G Epb41l3 erythrocyte membrane protein band 4.1-like 3 IDA
ISO
(MGI:2675529|PMID:12975355), (MGI:3621602|PMID:16551741), (MGI:5296417|PMID:21966409) RGD PMID:12975355 PMID:16551741 PMID:21966409, PMID:11146105 MGI:2675529 MGI:3621602 MGI:5296417, RGD:11252103 NCBI chr 9:117,314,935...117,666,408
Ensembl chr 9:117,538,009...117,666,410
JBrowse link
G Ermn ermin ISO
IBA
(PMID:20934411)
PMID:21873635
(MGI:3612229|PMID:16421295)
RGD PMID:16421295 PMID:20934411, PMID:21873635 MGI:3612229, RGD:13792537 NCBI chr 3:44,080,350...44,086,006
Ensembl chr 3:44,068,057...44,086,022
JBrowse link
G Gjc2 gap junction protein, gamma 2 IDA RGD PMID:16203097 RGD:13208516 NCBI chr10:45,526,740...45,535,520
Ensembl chr10:45,526,745...45,534,570
JBrowse link
G Kcna1 potassium voltage-gated channel subfamily A member 1 IDA
IBA
ISO
PMID:11086297
PMID:21873635
(MGI:67695|PMID:8046438)
(PMID:11086297)
RGD PMID:8046438 PMID:11086297, PMID:11086297, PMID:21873635 MGI:67695, RGD:10047340, RGD:13792537 NCBI chr 4:159,190,781...159,192,526
Ensembl chr 4:159,190,804...159,192,526
JBrowse link
G Kif13b kinesin family member 13B IDA PMID:19587293 MGI PMID:19587293 RGD:10400858 NCBI chr15:48,030,837...48,192,932
Ensembl chr15:48,030,973...48,189,951
JBrowse link
G Mag myelin-associated glycoprotein ISO (MGI:2675529|PMID:12975355), (MGI:5800352|PMID:27583434) RGD PMID:12975355 PMID:27583434 MGI:2675529 MGI:5800352 NCBI chr 1:89,345,325...89,360,905
Ensembl chr 1:89,345,429...89,360,733
JBrowse link
G Ncmap noncompact myelin associated protein IDA
IBA
IEA
PMID:18650334
PMID:21873635
GO_REF:0000002
InterPro PMID:18650334, PMID:21873635 GO_REF:0000002, RGD:8554263, RGD:13792537 NCBI chr 5:153,729,250...153,737,161
Ensembl chr 5:153,729,250...153,737,161
JBrowse link
G Nfasc neurofascin ISO (MGI:2675529|PMID:12975355), (MGI:3625634|PMID:16723544) RGD PMID:12975355 PMID:16723544 MGI:2675529 MGI:3625634 NCBI chr13:49,335,407...49,522,474
Ensembl chr13:49,335,408...49,522,415
JBrowse link
G Scn2a sodium voltage-gated channel alpha subunit 2 IEA
ISO
GO_REF:0000107
(MGI:3625634|PMID:16723544)
Ensembl
RGD
PMID:16723544 GO_REF:0000107 MGI:3625634 NCBI chr 3:51,687,910...51,822,008
Ensembl chr 3:51,687,809...51,822,250
JBrowse link
G Sirt2 sirtuin 2 IDA PMID:17344398 UniProt PMID:17344398 RGD:8553877 NCBI chr 1:86,948,866...86,971,954
Ensembl chr 1:86,948,918...86,971,952
JBrowse link
G Sptan1 spectrin, alpha, non-erythrocytic 1 ISO (MGI:3621602|PMID:16551741) RGD PMID:16551741 MGI:3621602 NCBI chr 3:8,534,437...8,599,259
Ensembl chr 3:8,534,440...8,599,260
JBrowse link
G Sptbn4 spectrin, beta, non-erythrocytic 4 ISO (MGI:4839704|PMID:20188654) RGD PMID:20188654 MGI:4839704 NCBI chr 1:84,168,494...84,254,679
Ensembl chr 1:84,168,495...84,254,645
JBrowse link
varicosity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bin1 bridging integrator 1 IDA RGD PMID:9348539 RGD:631926 NCBI chr18:25,163,575...25,222,139
Ensembl chr18:25,163,561...25,222,135
JBrowse link
G Cadm1 cell adhesion molecule 1 ISO (MGI:5009720|PMID:21482734) RGD PMID:21482734 MGI:5009720 NCBI chr 8:51,858,906...52,200,591
Ensembl chr 8:52,127,399...52,189,722
JBrowse link
G Cd40 CD40 molecule IDA RGD PMID:25972624 RGD:11344972 NCBI chr 3:161,519,789...161,534,943
Ensembl chr 3:161,519,743...161,534,704
JBrowse link
G Crh corticotropin releasing hormone IDA RGD PMID:15796765 RGD:5508814 NCBI chr 2:104,459,999...104,461,863
Ensembl chr 2:104,459,999...104,461,863
JBrowse link
G Crhbp corticotropin releasing hormone binding protein IDA RGD PMID:10524337 RGD:5490549 NCBI chr 2:25,141,471...25,153,334
Ensembl chr 2:25,141,471...25,153,334
JBrowse link
G Crhr2 corticotropin releasing hormone receptor 2 IDA RGD PMID:21481539 RGD:5490967 NCBI chr 4:85,286,371...85,329,374
Ensembl chr 4:85,286,372...85,329,362
JBrowse link
G Dagla diacylglycerol lipase, alpha ISO (MGI:4837552|PMID:20962221) RGD PMID:20962221 MGI:4837552 NCBI chr 1:226,297,013...226,353,712
Ensembl chr 1:226,297,016...226,353,611
JBrowse link
G Dbh dopamine beta-hydroxylase IDA RGD PMID:19651110 RGD:5129482 NCBI chr 3:5,709,236...5,731,895
Ensembl chr 3:5,709,236...5,731,898
JBrowse link
G Dnm1 dynamin 1 IDA RGD PMID:12646135 RGD:8554278 NCBI chr 3:11,338,081...11,382,043
Ensembl chr 3:11,338,083...11,382,043
JBrowse link
G Map1b microtubule-associated protein 1B IDA RGD PMID:11733546 RGD:2304025 NCBI chr 2:29,675,391...29,768,750
Ensembl chr 2:29,675,391...29,768,750
JBrowse link
G Mgll monoglyceride lipase ISO (MGI:4837552|PMID:20962221) RGD PMID:20962221 MGI:4837552 NCBI chr 4:120,671,436...120,773,458
Ensembl chr 4:120,671,489...120,771,088
JBrowse link
G Pnmt phenylethanolamine-N-methyltransferase IDA RGD PMID:19651110 RGD:5129482 NCBI chr10:86,340,893...86,342,501
Ensembl chr10:86,340,940...86,342,858
JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B IDA RGD PMID:20715153 RGD:5130921 NCBI chr 5:163,136,390...163,167,299
Ensembl chr 5:163,136,390...163,167,299
JBrowse link
G Trpm7 transient receptor potential cation channel, subfamily M, member 7 IDA RGD PMID:17088214 RGD:5684965 NCBI chr 3:119,258,189...119,347,084
Ensembl chr 3:119,259,467...119,330,345
JBrowse link
G Ucn urocortin IDA RGD PMID:15796765 RGD:5508814 NCBI chr 6:26,602,144...26,602,974
Ensembl chr 6:26,602,144...26,602,974
JBrowse link
G Ucn3 urocortin 3 IDA RGD PMID:11826127 RGD:70818 NCBI chr17:69,959,879...69,966,532
Ensembl chr17:69,960,160...69,966,099
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20615
    cellular anatomical entity 20304
      main axon 85
        axolemma 22
        axon initial segment 19
        internode region of axon 4
        juxtaparanode region of axon 10
        node of Ranvier 18
        paranode region of axon 17
        varicosity 16
Path 2
Term Annotations click to browse term
  cellular_component 20615
    cellular anatomical entity 20304
      cell projection 2549
        plasma membrane bounded cell projection 2478
          neuron projection 1660
            axon 843
              main axon 85
                axolemma 22
                axon initial segment 19
                internode region of axon 4
                juxtaparanode region of axon 10
                node of Ranvier 18
                paranode region of axon 17
                varicosity 16
paths to the root