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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular nitrogen compound catabolic process
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Accession:GO:0044270 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of organic and inorganic nitrogenous compounds.
Synonyms:broad_synonym: nitrogen compound breakdown;   nitrogen compound catabolism;   nitrogen compound degradation


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3'-UTR-mediated mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chrNW_004936601:2,470,021...2,616,451 JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO (PMID:26489465) UniProt PMID:26489465 NCBI chrNW_004936519:1,946,684...1,987,036 JBrowse link
G Dnd1 DND microRNA-mediated repression inhibitor 1 involved_in ISO (PMID:28297718) CACAO PMID:28297718 NCBI chrNW_004936531:9,607,678...9,610,245 JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:20805360 RGD:10042974 NCBI chrNW_004936738:2,096,370...2,115,135 JBrowse link
G LOC101960021 KH-type splicing regulatory protein involved_in ISO (PMID:16126846)
(PMID:28275056)
UniProt
CACAO
PMID:16126846 PMID:28275056 NCBI chrNW_004936588:3,764,401...3,774,492 JBrowse link
G LOC101975729 TAR DNA binding protein involved_in ISO (PMID:28335005) CACAO PMID:28335005 NCBI chrNW_004936474:90,813...103,713 JBrowse link
G Mov10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:24726324) UniProt PMID:24726324 NCBI chrNW_004936690:1,229,249...1,254,754 JBrowse link
G Plekhn1 pleckstrin homology domain containing N1 involved_in ISO (PMID:29180010)
(MGI:6105829|PMID:27616329)
UniProt PMID:27616329 PMID:29180010 MGI:6105829 NCBI chrNW_004936737:2,072,857...2,079,855 JBrowse link
G Qki QKI, KH domain containing RNA binding acts_upstream_of_or_within ISO (MGI:5316962|PMID:20631256) MGI PMID:20631256 MGI:5316962 NCBI chrNW_004936489:13,901,066...14,000,652 JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:24375645) UniProt PMID:24375645 NCBI chrNW_004936552:3,291,727...3,304,332 JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671) UniProt PMID:26000482 PMID:26255671 MGI:5706859 MGI:5751631 NCBI chrNW_004936481:13,919,006...13,973,868 JBrowse link
G Trim71 tripartite motif containing 71 involved_in ISO (PMID:23125361) CACAO PMID:23125361 NCBI chrNW_004936473:23,223,984...23,290,177 JBrowse link
G Upf1 UPF1 RNA helicase and ATPase involved_in ISO (PMID:26255671)
(PMID:24726324)
UniProt PMID:24726324 PMID:26255671 NCBI chrNW_004936596:2,469,444...2,505,688 JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A involved_in ISO (PMID:19909337)
(MGI:3842851|PMID:19322177), (MGI:5706859|PMID:26000482), (MGI:5706909|PMID:23185455), (MGI:5707103|PMID:26134560), (MGI:5751631|PMID:26255671)
UniProt PMID:19322177 PMID:19909337 PMID:23185455 PMID:26000482 PMID:26134560 PMID:26255671 MGI:3842851 MGI:5706859 MGI:5706909 MGI:5707103 MGI:5751631 NCBI chrNW_004936474:19,714,145...19,722,512 JBrowse link
G Zc3h12d zinc finger CCCH-type containing 12D involved_in ISO (MGI:5707103|PMID:26134560) UniProt PMID:26134560 MGI:5707103 NCBI chrNW_004936489:2,454,889...2,472,392 JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in ISO (PMID:14679154), (PMID:15187101), (PMID:15634918), (PMID:15766526)
(MGI:5795824|PMID:17288565)
(MGI:5784976|PMID:22701344), (MGI:5788345|PMID:27193233)
(PMID:11719186), (PMID:15687258), (PMID:20221403), (PMID:27193233), (PMID:9703499)
UniProt PMID:9703499 PMID:11719186 PMID:14679154 PMID:15187101 PMID:15634918 PMID:15687258 PMID:15766526 PMID:17288565 PMID:20221403 PMID:22701344 PMID:27193233 MGI:5784976 MGI:5788345 MGI:5795824 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in ISO (PMID:15467755), (PMID:15538381), (PMID:15687258), (PMID:18326031), (PMID:19179481), (PMID:24700863), (PMID:26542173)
(MGI:4818820|PMID:20622884), (MGI:5784967|PMID:24733888), (MGI:5784976|PMID:22701344)
(MGI:5779430|PMID:27102483), (MGI:5784968|PMID:24700863)
(PMID:12198173), (PMID:25014217), (PMID:25106868)
UniProt PMID:12198173 PMID:15467755 PMID:15538381 PMID:15687258 PMID:18326031 PMID:19179481 PMID:20622884 PMID:22701344 PMID:24700863 PMID:24733888 PMID:25014217 PMID:25106868 PMID:26542173 PMID:27102483 MGI:4818820 MGI:5779430 MGI:5784967 MGI:5784968 MGI:5784976 NCBI chrNW_004936495:12,045,679...12,050,737 JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 involved_in ISO (PMID:25106868)
(MGI:4818820|PMID:20622884), (MGI:5784976|PMID:22701344)
UniProt PMID:20622884 PMID:22701344 PMID:25106868 MGI:4818820 MGI:5784976 NCBI chrNW_004936508:8,617,185...8,620,823 JBrowse link
3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angel2 angel homolog 2 involved_in ISO (PMID:22547059) HGNC PMID:22547059 NCBI chrNW_004936557:605,609...621,421 JBrowse link
G Elavl1 ELAV like RNA binding protein 1 involved_in ISO (PMID:14517288), (PMID:26489465), (PMID:29180010)
(MGI:6105829|PMID:27616329)
(PMID:19029303)
UniProt PMID:14517288 PMID:19029303 PMID:26489465 PMID:27616329 PMID:29180010 MGI:6105829 NCBI chrNW_004936588:4,931,665...4,959,032 JBrowse link
G Elavl4 ELAV like RNA binding protein 4 involved_in ISO (PMID:12034726) UniProt PMID:12034726 NCBI chrNW_004936522:10,349,684...10,435,963 JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 involved_in ISO (MGI:5306322|PMID:12456657) UniProt PMID:12456657 MGI:5306322 NCBI chrNW_004936597:4,712,201...4,714,949 JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C involved_in ISO (PMID:16010978) UniProt PMID:16010978 NCBI chrNW_004936880:368,041...425,967 JBrowse link
G LOC101967682 TIR domain containing adaptor protein involved_in ISO (PMID:15294994) BHF-UCL PMID:15294994 NCBI chrNW_004936572:5,926,193...5,938,621 JBrowse link
G LOC101975729 TAR DNA binding protein involved_in ISO (PMID:17481916) BHF-UCL PMID:17481916 NCBI chrNW_004936474:90,813...103,713 JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 involved_in ISO (PMID:14517288), (PMID:15014438), (PMID:20932473) UniProt PMID:14517288 PMID:15014438 PMID:20932473 NCBI chrNW_004936557:5,867,182...5,911,207 JBrowse link
G Myd88 MYD88 innate immune signal transduction adaptor involved_in ISO (PMID:15294994) BHF-UCL PMID:15294994 NCBI chrNW_004936473:27,672,237...27,676,339 JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO RGD PMID:11696543 RGD:10045987 NCBI chrNW_004936588:316,348...326,895 JBrowse link
G Rbm10 RNA binding motif protein 10 acts_upstream_of_or_within ISO (MGI:4367529|PMID:19508861) MGI PMID:19508861 MGI:4367529 NCBI chrNW_004936502:12,923,890...12,952,179 JBrowse link
G Rbm38 RNA binding motif protein 38 involved_in ISO (PMID:17050675) UniProt PMID:17050675 NCBI chrNW_004936530:227,266...249,285 JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in ISO (PMID:15014438) UniProt PMID:15014438 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
5-methylcytosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tet2 tet methylcytosine dioxygenase 2 involved_in ISO (PMID:24315485) UniProt PMID:24315485 NCBI chrNW_004936752:440,137...577,339 JBrowse link
acetyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 involved_in ISO (PMID:17371050) BHF-UCL PMID:17371050 NCBI chrNW_004936551:594,647...626,016 JBrowse link
G Nudt7 nudix hydrolase 7 acts_upstream_of_or_within
involved_in
ISO (MGI:2137102|PMID:11415433)
(MGI:6450264|PMID:18799520)
MGI
UniProt
PMID:11415433 PMID:18799520 MGI:2137102 MGI:6450264 NCBI chrNW_004936475:26,079,298...26,095,466 JBrowse link
adenosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within
involved_in
ISO (MGI:2151677|PMID:11591798), (MGI:3531253|PMID:8663040)
(PMID:8894685)
(PMID:16670267)
(MGI:1861066|PMID:10899903), (MGI:2155238|PMID:9478961), (MGI:3525377|PMID:15630442), (MGI:3619310|PMID:14607964), (MGI:3640719|PMID:10720488), (MGI:3664521|PMID:16841096), (MGI:3794903|PMID:18340377)
(MGI:74163|PMID:7670465)
(MGI:1095761|PMID:9272950), (MGI:72798|PMID:7731963)
(MGI:4835158|PMID:8672487)
(MGI:1095761|PMID:9272950), (MGI:3531253|PMID:8663040), (MGI:3808984|PMID:2015347), (MGI:49990|PMID:1618849), (MGI:59127|PMID:2387582), (MGI:76875|PMID:7592575), (MGI:83255|PMID:8894685)
MGI
UniProt
PMID:1618849 PMID:2015347 PMID:2387582 PMID:7592575 PMID:7670465 PMID:7731963 PMID:8663040 PMID:8672487 PMID:8894685 PMID:9272950 PMID:9478961 PMID:10720488 PMID:10899903 PMID:11591798 PMID:14607964 PMID:15630442 PMID:16670267 PMID:16841096 PMID:18340377 MGI:1095761 MGI:1861066 MGI:2151677 MGI:2155238 MGI:3525377 MGI:3531253 MGI:3619310 MGI:3640719 MGI:3664521 MGI:3794903 MGI:3808984 MGI:4835158 MGI:49990 MGI:59127 MGI:72798 MGI:74163 MGI:76875 MGI:83255 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G Ada2 adenosine deaminase 2 involved_in ISO (PMID:20147294) UniProt PMID:20147294 NCBI chrNW_004936807:232,851...262,593 JBrowse link
G Xdh xanthine dehydrogenase involved_in ISO (MGI:49329|PMID:1590774), (MGI:6478097|PMID:29895374), (MGI:6478533|PMID:8226898)
(PMID:1619276)
(MGI:2447927|PMID:12502743)
(MGI:6306257|PMID:30936145)
MGI PMID:1590774 PMID:1619276 PMID:8226898 PMID:12502743 PMID:29895374 PMID:30936145 MGI:2447927 MGI:49329 MGI:6306257 MGI:6478097 MGI:6478533 NCBI chrNW_004936493:1,762,814...1,824,501 JBrowse link
ADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd3 adenosine monophosphate deaminase 3 involved_in ISO (MGI:5917829|PMID:28746349) MGI PMID:28746349 MGI:5917829 NCBI chrNW_004936528:7,847,156...7,891,585 JBrowse link
G Nt5e 5'-nucleotidase ecto involved_in ISO (MGI:6478084|PMID:20430891)
(MGI:5917829|PMID:28746349)
MGI PMID:20430891 PMID:28746349 MGI:5917829 MGI:6478084 NCBI chrNW_004936510:5,797,218...5,846,118 JBrowse link
G Nudt9 nudix hydrolase 9 acts_upstream_of_or_within ISO (MGI:2158549|PMID:11825615) MGI PMID:11825615 MGI:2158549 NCBI chrNW_004936905:586,160...616,490 JBrowse link
alkaloid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101961588 cytochrome P450 2D17 involved_in ISO (PMID:15039299) BHF-UCL PMID:15039299 NCBI chrNW_004936718:153,340...157,966 JBrowse link
AMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in ISO (MGI:6478860|PMID:8064675) MGI PMID:8064675 MGI:6478860 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G Ampd3 adenosine monophosphate deaminase 3 involved_in ISO (MGI:5917829|PMID:28746349) MGI PMID:28746349 MGI:5917829 NCBI chrNW_004936528:7,847,156...7,891,585 JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA involved_in ISO (PMID:11133996) MGI PMID:11133996 NCBI chrNW_004936474:21,535,197...21,542,417 JBrowse link
G Nt5c1b 5'-nucleotidase, cytosolic IB involved_in ISO (MGI:2153435|PMID:11690631) MGI PMID:11690631 MGI:2153435 NCBI chrNW_004936493:12,520,480...12,547,394 JBrowse link
G Nt5e 5'-nucleotidase ecto acts_upstream_of_or_within
involved_in
ISO (MGI:3770326|PMID:16547283)
(MGI:5917829|PMID:28746349)
(MGI:6478084|PMID:20430891)
RGD
MGI
PMID:16547283 PMID:20430891 PMID:21414400 PMID:28746349 MGI:3770326 MGI:5917829 MGI:6478084 RGD:5134346 NCBI chrNW_004936510:5,797,218...5,846,118 JBrowse link
G Xdh xanthine dehydrogenase involved_in ISO (MGI:6478860|PMID:8064675)
(PMID:1619276)
MGI PMID:1619276 PMID:8064675 MGI:6478860 NCBI chrNW_004936493:1,762,814...1,824,501 JBrowse link
apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffb DNA fragmentation factor subunit beta acts_upstream_of_or_within
involved_in
ISO (PMID:15572351)
(PMID:22253444)
RGD
MGI
CAFA
PMID:11425895 PMID:15572351 PMID:22253444 RGD:628524 NCBI chrNW_004936737:79,789...96,140 JBrowse link
G Dnase1l3 deoxyribonuclease 1 like 3 involved_in
acts_upstream_of_or_within
ISO (PMID:23229555)
(MGI:2385551|PMID:12050166)
UniProt
MGI
PMID:12050166 PMID:23229555 MGI:2385551 NCBI chrNW_004936473:8,430,235...8,495,170 JBrowse link
G Endog endonuclease G acts_upstream_of_or_within ISO (MGI:3029597|PMID:14663139) MGI PMID:14663139 MGI:3029597 NCBI chrNW_004936487:16,282,115...16,285,486 JBrowse link
G Foxl2 forkhead box L2 involved_in ISO (PMID:16153597) UniProt PMID:16153597 NCBI chrNW_004936540:1,136,403...1,137,984 JBrowse link
butyryl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 involved_in ISO (MGI:6450264|PMID:18799520) UniProt PMID:18799520 MGI:6450264 NCBI chrNW_004936475:26,079,298...26,095,466 JBrowse link
cAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde4d phosphodiesterase 4D involved_in ISO (PMID:20819076) BHF-UCL PMID:20819076 NCBI chrNW_004936480:8,123,437...9,235,586 JBrowse link
carnitine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadl acyl-CoA dehydrogenase long chain involved_in ISO (MGI:1321427|PMID:9861014) BHF-UCL PMID:9861014 MGI:1321427 NCBI chrNW_004936845:66,674...96,248 JBrowse link
cellular amide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nit1 nitrilase 1 involved_in ISO (MGI:5904538|PMID:28373563) UniProt PMID:28373563 MGI:5904538 NCBI chrNW_004936903:432,585...436,697 JBrowse link
G Pm20d1 peptidase M20 domain containing 1 involved_in ISO (PMID:27374330)
(MGI:5796058|PMID:27374330)
UniProt PMID:27374330 MGI:5796058 NCBI chrNW_004936557:6,610,862...6,631,220 JBrowse link
cGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde1a phosphodiesterase 1A ISO RGD PMID:16514069 RGD:2312521 NCBI chrNW_004936509:10,819,067...11,142,964 JBrowse link
G Pde2a phosphodiesterase 2A involved_in ISO (PMID:19828435)
(MGI:4420377|PMID:19632989)
UniProt PMID:19632989 PMID:19828435 MGI:4420377 NCBI chrNW_004936498:1,856,256...1,944,405 JBrowse link
G Pde5a phosphodiesterase 5A acts_upstream_of_or_within ISO (MGI:2450821|PMID:12554648) MGI PMID:12554648 MGI:2450821 NCBI chrNW_004936869:24,265...117,120 JBrowse link
G Pde9a phosphodiesterase 9A involved_in ISO (PMID:25799991)
(MGI:1266874|PMID:9624145)
(MGI:5634842|PMID:25799991)
UniProt PMID:9624145 PMID:25799991 MGI:1266874 MGI:5634842 NCBI chrNW_004936500:1,201,843...1,266,818 JBrowse link
CMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upp1 uridine phosphorylase 1 involved_in ISO (MGI:2683856|PMID:14715930) MGI PMID:14715930 MGI:2683856 NCBI chrNW_004936478:22,508,602...22,531,604 JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (MGI:2683856|PMID:14715930) MGI PMID:14715930 MGI:2683856 NCBI chrNW_004936469:20,465,767...20,513,084 JBrowse link
cobalamin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cubn cubilin ISO RGD PMID:14576052 RGD:8554807 NCBI chrNW_004936520:10,140,784...10,410,082 JBrowse link
coenzyme A catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 acts_upstream_of_or_within
involved_in
ISO (MGI:2137102|PMID:11415433)
(MGI:6450264|PMID:18799520)
MGI
UniProt
PMID:11415433 PMID:18799520 MGI:2137102 MGI:6450264 NCBI chrNW_004936475:26,079,298...26,095,466 JBrowse link
CRD-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:19029303) UniProt PMID:19029303 NCBI chrNW_004936481:6,896,487...6,934,938 JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in ISO (PMID:19029303) UniProt PMID:19029303 NCBI chrNW_004936526:6,014,745...6,022,213 JBrowse link
G Igf2bp1 insulin like growth factor 2 mRNA binding protein 1 involved_in ISO (PMID:19029303) UniProt PMID:19029303 NCBI chrNW_004936490:12,430,343...12,468,794 JBrowse link
G LOC101969104 synaptotagmin binding cytoplasmic RNA interacting protein involved_in ISO (PMID:19029303) UniProt PMID:19029303 NCBI chrNW_004936510:5,643,072...5,672,258 JBrowse link
G Ybx1 Y-box binding protein 1 involved_in ISO (PMID:19029303) UniProt PMID:19029303 NCBI chrNW_004936474:24,026,459...24,047,724 JBrowse link
CTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in ISO (PMID:11278936) UniProt PMID:11278936 NCBI chrNW_004936636:406,389...446,167 JBrowse link
CUT catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease involved_in ISO (PMID:19056938) UniProt PMID:19056938 NCBI chrNW_004936511:8,082,909...8,105,203 JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:19056938) UniProt PMID:19056938 NCBI chrNW_004936474:130,735...153,608 JBrowse link
G Exosc3 exosome component 3 involved_in ISO (PMID:19056938) UniProt PMID:19056938 NCBI chrNW_004936524:5,580,855...5,586,170 JBrowse link
cytidine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation induced cytidine deaminase involved_in ISO (MGI:2656023|PMID:12692563) UniProt PMID:12692563 MGI:2656023 NCBI chrNW_004936870:25,039...34,601 JBrowse link
G Cda cytidine deaminase involved_in ISO (PMID:9596658) RGD
UniProt
PMID:675715 PMID:9596658 RGD:2316616 NCBI chrNW_004936474:6,543,295...6,564,575 JBrowse link
G Cdadc1 cytidine and dCMP deaminase domain containing 1 involved_in ISO (PMID:26945630) UniProt PMID:26945630 NCBI chrNW_004936565:2,336,613...2,395,816 JBrowse link
dADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in ISO (PMID:22556419) UniProt PMID:22556419 NCBI chrNW_004936555:5,929,262...5,932,334 JBrowse link
dAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in ISO (MGI:3640719|PMID:10720488) MGI PMID:10720488 MGI:3640719 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G LOC101970144 purine nucleoside phosphorylase involved_in ISO (PMID:6771276) MGI PMID:6771276 NCBI chrNW_004936877:686,539...692,832 JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA involved_in ISO (PMID:11133996) MGI PMID:11133996 NCBI chrNW_004936474:21,535,197...21,542,417 JBrowse link
G Xdh xanthine dehydrogenase involved_in ISO (MGI:6478860|PMID:8064675) MGI PMID:8064675 MGI:6478860 NCBI chrNW_004936493:1,762,814...1,824,501 JBrowse link
dATP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO (MGI:76875|PMID:7592575)
(MGI:2155238|PMID:9478961), (MGI:3619310|PMID:14607964)
(MGI:72798|PMID:7731963)
(MGI:74163|PMID:7670465)
MGI PMID:7592575 PMID:7670465 PMID:7731963 PMID:9478961 PMID:14607964 MGI:2155238 MGI:3619310 MGI:72798 MGI:74163 MGI:76875 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in ISO (PMID:24141705)
(MGI:5828027|PMID:27920203)
UniProt
MGI
PMID:24141705 PMID:27920203 MGI:5828027 NCBI chrNW_004936561:4,180,607...4,238,623 JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (MGI:55510|PMID:6301357) MGI PMID:6301357 MGI:55510 NCBI chrNW_004936594:430,274...432,027 JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (MGI:73237|PMID:7744869) MGI PMID:7744869 MGI:73237 NCBI chrNW_004936478:22,508,602...22,531,604 JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (PMID:12849978) MGI PMID:12849978 NCBI chrNW_004936469:20,465,767...20,513,084 JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 involved_in ISO (PMID:24467396) UniProt PMID:24467396 NCBI chrNW_004936501:12,880,745...12,884,240 JBrowse link
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot7 CCR4-NOT transcription complex subunit 7 acts_upstream_of_or_within ISO (MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:3807625 NCBI chrNW_004936573:6,288,397...6,305,984 JBrowse link
G Noct nocturnin acts_upstream_of_or_within ISO (MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:3807625 NCBI chrNW_004936535:8,504,518...8,509,376 JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 acts_upstream_of_or_within ISO (MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:3807625 NCBI chrNW_004936472:23,297,679...23,434,107 JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor involved_in ISO (PMID:20584987), (PMID:20852261) UniProt PMID:20584987 PMID:20852261 NCBI chrNW_004936581:3,075,371...3,100,584 JBrowse link
deoxyadenosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO (MGI:76875|PMID:7592575)
(MGI:1095761|PMID:9272950), (MGI:72798|PMID:7731963)
(MGI:74163|PMID:7670465)
(MGI:2155238|PMID:9478961), (MGI:3619310|PMID:14607964), (MGI:3640719|PMID:10720488)
MGI PMID:7592575 PMID:7670465 PMID:7731963 PMID:9272950 PMID:9478961 PMID:10720488 PMID:14607964 MGI:1095761 MGI:2155238 MGI:3619310 MGI:3640719 MGI:72798 MGI:74163 MGI:76875 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G LOC101970144 purine nucleoside phosphorylase involved_in ISO (PMID:6771276) MGI PMID:6771276 NCBI chrNW_004936877:686,539...692,832 JBrowse link
G Xdh xanthine dehydrogenase involved_in ISO (MGI:6478860|PMID:8064675) MGI PMID:8064675 MGI:6478860 NCBI chrNW_004936493:1,762,814...1,824,501 JBrowse link
deoxyguanosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gda guanine deaminase involved_in ISO (MGI:6478860|PMID:8064675) MGI PMID:8064675 MGI:6478860 NCBI chrNW_004936503:8,191,925...8,279,806 JBrowse link
G Xdh xanthine dehydrogenase involved_in ISO (MGI:6306257|PMID:30936145), (MGI:6478097|PMID:29895374), (MGI:6478533|PMID:8226898) MGI PMID:8226898 PMID:29895374 PMID:30936145 MGI:6306257 MGI:6478097 MGI:6478533 NCBI chrNW_004936493:1,762,814...1,824,501 JBrowse link
deoxyinosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101970144 purine nucleoside phosphorylase involved_in ISO (PMID:6771276) MGI PMID:6771276 NCBI chrNW_004936877:686,539...692,832 JBrowse link
G Xdh xanthine dehydrogenase involved_in ISO (MGI:6306257|PMID:30936145)
(PMID:1619276)
(MGI:49329|PMID:1590774), (MGI:6478097|PMID:29895374), (MGI:6478533|PMID:8226898)
(MGI:2447927|PMID:12502743)
MGI PMID:1590774 PMID:1619276 PMID:8226898 PMID:12502743 PMID:29895374 PMID:30936145 MGI:2447927 MGI:49329 MGI:6306257 MGI:6478097 MGI:6478533 NCBI chrNW_004936493:1,762,814...1,824,501 JBrowse link
deoxyribonucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dera deoxyribose-phosphate aldolase involved_in ISO (PMID:9226884) UniProt PMID:9226884 NCBI chrNW_004936587:1,555,534...1,665,217 JBrowse link
deoxyribonucleoside monophosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnph1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 involved_in ISO (PMID:25108359)
PMID:17234634
UniProt PMID:17234634 PMID:25108359 RGD:8553712 NCBI chrNW_004936476:16,740,643...16,742,831 JBrowse link
deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic acts_upstream_of_or_within ISO (MGI:1353788|PMID:10681516) MGI PMID:10681516 MGI:1353788 NCBI chrNW_004936594:430,274...432,027 JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in ISO (PMID:23601106), (PMID:26294762) UniProt PMID:23601106 PMID:26294762 NCBI chrNW_004936561:4,180,607...4,238,623 JBrowse link
dGDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in ISO (PMID:22556419) UniProt PMID:22556419 NCBI chrNW_004936555:5,929,262...5,932,334 JBrowse link
dGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gda guanine deaminase involved_in ISO (MGI:6478860|PMID:8064675) MGI PMID:8064675 MGI:6478860 NCBI chrNW_004936503:8,191,925...8,279,806 JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (MGI:1353788|PMID:10681516) MGI PMID:10681516 MGI:1353788 NCBI chrNW_004936594:430,274...432,027 JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA involved_in ISO (PMID:11133996) MGI PMID:11133996 NCBI chrNW_004936474:21,535,197...21,542,417 JBrowse link
G Nt5c2 5'-nucleotidase, cytosolic II involved_in ISO (MGI:6478530|PMID:5560407) MGI PMID:5560407 MGI:6478530 NCBI chrNW_004936600:2,828,277...2,892,795 JBrowse link
G Xdh xanthine dehydrogenase involved_in ISO (MGI:6306257|PMID:30936145), (MGI:6478097|PMID:29895374), (MGI:6478533|PMID:8226898) MGI PMID:8226898 PMID:29895374 PMID:30936145 MGI:6306257 MGI:6478097 MGI:6478533 NCBI chrNW_004936493:1,762,814...1,824,501 JBrowse link
dGTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt15 nudix hydrolase 15 involved_in ISO (PMID:22556419) UniProt PMID:22556419 NCBI chrNW_004936565:1,380,981...1,389,908 JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in ISO (PMID:24217394) UniProt PMID:24217394 NCBI chrNW_004936561:4,180,607...4,238,623 JBrowse link
diadenosine triphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fhit fragile histidine triad diadenosine triphosphatase involved_in ISO (PMID:8794732) RGD
UniProt
PMID:8794732 PMID:16359767 RGD:2289929 NCBI chrNW_004936473:397,140...1,424,805 JBrowse link
dITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101965734 U8 snoRNA-decapping enzyme acts_upstream_of_or_within ISO (MGI:5009783|PMID:20081199) MGI PMID:20081199 MGI:5009783 NCBI chrNW_004936529:4,825,277...4,827,011 JBrowse link
DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffb DNA fragmentation factor subunit beta involved_in ISO (PMID:19944011) CAFA PMID:19944011 NCBI chrNW_004936737:79,789...96,140 JBrowse link
G Dnase1l2 deoxyribonuclease 1 like 2 acts_upstream_of_or_within ISO (MGI:5308183|PMID:21307874) MGI PMID:21307874 MGI:5308183 NCBI chrNW_004936694:1,808,184...1,810,735 JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (MGI:3834787|PMID:18724932), (MGI:4414715|PMID:19923437), (MGI:5562498|PMID:23993650)
(MGI:5637600|PMID:25848017)
(MGI:4848004|PMID:20871604)
MGI PMID:18724932 PMID:19923437 PMID:20871604 PMID:23993650 PMID:25848017 MGI:3834787 MGI:4414715 MGI:4848004 MGI:5562498 MGI:5637600 NCBI chrNW_004936529:264,535...266,451 JBrowse link
DNA catabolic process, endonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnase1 deoxyribonuclease 1 involved_in ISO (MGI:6094744|PMID:29191910) UniProt PMID:29191910 MGI:6094744 NCBI chrNW_004936694:704,948...715,846 JBrowse link
G Dnase1l3 deoxyribonuclease 1 like 3 involved_in ISO (MGI:6094744|PMID:29191910) UniProt PMID:29191910 MGI:6094744 NCBI chrNW_004936473:8,430,235...8,495,170 JBrowse link
G Fbh1 F-box DNA helicase 1 acts_upstream_of_or_within ISO (PMID:23361013) MGI PMID:23361013 NCBI chrNW_004936484:8,635,752...8,689,949 JBrowse link
G LOC101962206 histone-lysine N-methyltransferase SETMAR involved_in ISO (PMID:24573677)
(PMID:20521842), (PMID:21491884)
UniProt PMID:20521842 PMID:21491884 PMID:24573677 NCBI chrNW_004936577:3,761,078...3,771,864 JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit acts_upstream_of_or_within ISO (PMID:23361013) MGI PMID:23361013 NCBI chrNW_004936599:3,670,759...3,677,375 JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease involved_in ISO (PMID:21602889) ARUK-UCL PMID:21602889 NCBI chrNW_004936669:3,479,778...3,504,938 JBrowse link
DNA catabolic process, exonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isg20 interferon stimulated exonuclease gene 20 involved_in ISO (PMID:11401564) UniProt PMID:11401564 NCBI chrNW_004936483:14,616,796...14,635,290 JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease involved_in ISO (PMID:21602889) ARUK-UCL PMID:21602889 NCBI chrNW_004936669:3,479,778...3,504,938 JBrowse link
G Xrn2 5'-3' exoribonuclease 2 involved_in ISO (PMID:15565158) UniProt PMID:15565158 NCBI chrNW_004936620:4,069,956...4,145,212 JBrowse link
DNA replication, removal of RNA primer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dna2 DNA replication helicase/nuclease 2 involved_in ISO (PMID:18995831) UniProt PMID:18995831 NCBI chrNW_004936521:9,843,867...9,884,248 JBrowse link
G Fen1 flap structure-specific endonuclease 1 involved_in ISO (PMID:18995831) UniProt PMID:18995831 NCBI chrNW_004936581:1,328,685...1,332,713 JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101977033 thymidine phosphorylase involved_in ISO (MGI:2183137|PMID:12077348) MGI PMID:12077348 MGI:2183137 NCBI chrNW_004936629:315,609...320,356 JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (MGI:55510|PMID:6301357) MGI PMID:6301357 MGI:55510 NCBI chrNW_004936594:430,274...432,027 JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (MGI:2183137|PMID:12077348) MGI PMID:12077348 MGI:2183137 NCBI chrNW_004936478:22,508,602...22,531,604 JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT|involved_in ISO (PMID:24467396) UniProt PMID:24467396 NCBI chrNW_004936501:12,880,745...12,884,240 JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (MGI:1353788|PMID:10681516) MGI PMID:10681516 MGI:1353788 NCBI chrNW_004936594:430,274...432,027 JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial acts_upstream_of_or_within ISO (MGI:2388903|PMID:12234672) MGI PMID:12234672 MGI:2388903 NCBI chrNW_004936741:950,681...999,290 JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (MGI:6478539|PMID:14154460) MGI PMID:14154460 MGI:6478539 NCBI chrNW_004936478:22,508,602...22,531,604 JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase ISO RGD PMID:1315924 PMID:3032103 RGD:2300191 RGD:2301218 NCBI chrNW_004936471:10,670,604...10,681,356 JBrowse link
exonucleolytic catabolism of deadenylated mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6 CCR4-NOT transcription complex subunit 6 involved_in ISO (PMID:20065043) UniProt PMID:20065043 NCBI chrNW_004936739:308,117...384,600 JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 involved_in ISO (PMID:20065043), (PMID:21336257) UniProt PMID:20065043 PMID:21336257 NCBI chrNW_004936573:6,288,397...6,305,984 JBrowse link
G Cnot8 CCR4-NOT transcription complex subunit 8 involved_in ISO (PMID:20065043) UniProt PMID:20065043 NCBI chrNW_004936515:7,971,504...7,988,257 JBrowse link
G Exosc3 exosome component 3 involved_in ISO (PMID:11782436) UniProt PMID:11782436 NCBI chrNW_004936524:5,580,855...5,586,170 JBrowse link
G Exosc5 exosome component 5 involved_in ISO (PMID:11782436) UniProt PMID:11782436 NCBI chrNW_004936661:3,790,283...3,799,602 JBrowse link
G Exosc9 exosome component 9 involved_in ISO (PMID:11782436) UniProt PMID:11782436 NCBI chrNW_004936662:1,062,461...1,073,425 JBrowse link
fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fitm2 fat storage inducing transmembrane protein 2 involved_in ISO (PMID:32915949) UniProt PMID:32915949 NCBI chrNW_004936530:2,491,924...2,498,579 JBrowse link
flavin adenine dinucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101972576 valosin containing protein involved_in ISO (PMID:23498975) ParkinsonsUK-UCL PMID:23498975 NCBI chrNW_004936524:3,085,959...3,102,461 JBrowse link
folic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfs methenyltetrahydrofolate synthetase involved_in ISO (PMID:12764149) BHF-UCL PMID:12764149 NCBI chrNW_004936471:37,910,856...37,964,655 JBrowse link
GDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO (PMID:10858452) UniProt PMID:10858452 NCBI chrNW_004936555:6,896,661...6,920,333 JBrowse link
G Nudt18 nudix hydrolase 18 involved_in ISO (PMID:22556419) UniProt PMID:22556419 NCBI chrNW_004936555:5,929,262...5,932,334 JBrowse link
GMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gda guanine deaminase involved_in ISO (MGI:6478860|PMID:8064675) MGI PMID:8064675 MGI:6478860 NCBI chrNW_004936503:8,191,925...8,279,806 JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 involved_in ISO (PMID:19527031) UniProt PMID:19527031 NCBI chrNW_004936691:650,753...694,362 JBrowse link
G Prtfdc1 phosphoribosyl transferase domain containing 1 NOT|involved_in ISO (PMID:21054786) UniProt PMID:21054786 NCBI chrNW_004936484:568,056...650,820 JBrowse link
G Xdh xanthine dehydrogenase involved_in ISO (MGI:6306257|PMID:30936145), (MGI:6478533|PMID:8226898) MGI PMID:8226898 PMID:30936145 MGI:6306257 MGI:6478533 NCBI chrNW_004936493:1,762,814...1,824,501 JBrowse link
guanine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xdh xanthine dehydrogenase involved_in ISO (MGI:49329|PMID:1590774) MGI PMID:1590774 MGI:49329 NCBI chrNW_004936493:1,762,814...1,824,501 JBrowse link
heme catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blvra biliverdin reductase A involved_in ISO (PMID:10858451) UniProt PMID:10858451 NCBI chrNW_004936478:18,811,452...18,850,594 JBrowse link
G Blvrb biliverdin reductase B involved_in ISO (PMID:7929092) UniProt PMID:7929092 NCBI chrNW_004936661:2,808,998...2,818,123 JBrowse link
G Hmox1 heme oxygenase 1 involved_in ISO (PMID:17915953) RGD
BHF-UCL
PMID:15226268 PMID:17915953 RGD:1547877 NCBI chrNW_004936492:5,042,353...5,049,216 JBrowse link
heme oxidation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 involved_in ISO (PMID:17915953) BHF-UCL PMID:17915953 NCBI chrNW_004936492:5,042,353...5,049,216 JBrowse link
histamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnmt histamine N-methyltransferase involved_in ISO (PMID:26206890) UniProt PMID:26206890 NCBI chrNW_004936469:38,125,877...38,166,429 JBrowse link
histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO (PMID:16086026) UniProt PMID:16086026 NCBI chrNW_004936551:359,134...534,672 JBrowse link
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004936597:4,884,458...4,918,041 JBrowse link
G Eri1 exoribonuclease 1 NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004936573:1,448,325...1,474,753 JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004936474:130,735...153,608 JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004936470:8,097,218...8,099,319 JBrowse link
G LOC101957171 mitochondrial poly(A) polymerase involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004936613:3,836,461...3,865,240 JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004936710:1,546,027...1,551,685 JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004936549:7,401,532...7,465,264 JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004936475:3,266,763...3,328,209 JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165
G Tut4 terminal uridylyl transferase 4 NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004936522:8,468,092...8,560,453 JBrowse link
G Tut7 terminal uridylyl transferase 7 NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004936680:1,693,815...1,753,641 JBrowse link
G Upf1 UPF1 RNA helicase and ATPase involved_in ISO (PMID:16086026) UniProt PMID:16086026 NCBI chrNW_004936596:2,469,444...2,505,688 JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004936540:3,959,156...4,073,785 JBrowse link
hypoxanthine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xdh xanthine dehydrogenase involved_in ISO (PMID:1619276)
(MGI:6306257|PMID:30936145)
(MGI:49329|PMID:1590774)
RGD
MGI
PMID:232638 PMID:1590774 PMID:1619276 PMID:30936145 MGI:49329 MGI:6306257 RGD:13210503 NCBI chrNW_004936493:1,762,814...1,824,501 JBrowse link
IDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101965734 U8 snoRNA-decapping enzyme involved_in ISO (PMID:20385596) UniProt PMID:20385596 NCBI chrNW_004936529:4,825,277...4,827,011 JBrowse link
G Nudt9 nudix hydrolase 9 acts_upstream_of_or_within ISO (MGI:2158549|PMID:11825615) MGI PMID:11825615 MGI:2158549 NCBI chrNW_004936905:586,160...616,490 JBrowse link
IMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101970144 purine nucleoside phosphorylase involved_in ISO (PMID:6771276) MGI PMID:6771276 NCBI chrNW_004936877:686,539...692,832 JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (MGI:55510|PMID:6301357) MGI PMID:6301357 MGI:55510 NCBI chrNW_004936594:430,274...432,027 JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA involved_in ISO (PMID:11133996) MGI PMID:11133996 NCBI chrNW_004936474:21,535,197...21,542,417 JBrowse link
G Nt5c2 5'-nucleotidase, cytosolic II involved_in ISO (PMID:21873433) MGI PMID:21873433 NCBI chrNW_004936600:2,828,277...2,892,795 JBrowse link
G Xdh xanthine dehydrogenase involved_in ISO (MGI:6478860|PMID:8064675) MGI PMID:8064675 MGI:6478860 NCBI chrNW_004936493:1,762,814...1,824,501 JBrowse link
inosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101970144 purine nucleoside phosphorylase involved_in
acts_upstream_of_or_within
ISO (PMID:23438750)
(PMID:16964310)
UniProt
MGI
PMID:16964310 PMID:23438750 NCBI chrNW_004936877:686,539...692,832 JBrowse link
G Xdh xanthine dehydrogenase involved_in ISO (MGI:49329|PMID:1590774), (MGI:6478097|PMID:29895374), (MGI:6478533|PMID:8226898)
(PMID:1619276)
(MGI:2447927|PMID:12502743)
(MGI:6306257|PMID:30936145)
MGI PMID:1590774 PMID:1619276 PMID:8226898 PMID:12502743 PMID:29895374 PMID:30936145 MGI:2447927 MGI:49329 MGI:6306257 MGI:6478097 MGI:6478533 NCBI chrNW_004936493:1,762,814...1,824,501 JBrowse link
ITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Itpa inosine triphosphatase acts_upstream_of_or_within ISO (MGI:5009783|PMID:20081199) MGI PMID:20081199 MGI:5009783 NCBI chrNW_004936485:15,499,688...15,511,992 JBrowse link
long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot7 acyl-CoA thioesterase 7 involved_in ISO (PMID:10578051) BHF-UCL PMID:10578051 NCBI chrNW_004936623:1,112,021...1,191,190 JBrowse link
malonyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlycd malonyl-CoA decarboxylase involved_in ISO (PMID:10417274), (PMID:10455107), (PMID:15003260)
(MGI:5501374|PMID:23746352)
UniProt PMID:10417274 PMID:10455107 PMID:15003260 PMID:23746352 MGI:5501374 NCBI chrNW_004936641:3,836,418...3,846,485 JBrowse link
medium-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot7 acyl-CoA thioesterase 7 involved_in ISO (PMID:10578051) BHF-UCL PMID:10578051 NCBI chrNW_004936623:1,112,021...1,191,190 JBrowse link
G Nudt7 nudix hydrolase 7 involved_in ISO (MGI:6450264|PMID:18799520) UniProt PMID:18799520 MGI:6450264 NCBI chrNW_004936475:26,079,298...26,095,466 JBrowse link
miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3l2 DIS3 like 3'-5' exoribonuclease 2 involved_in ISO (PMID:24141620)
(MGI:5494337|PMID:23594738)
(MGI:5603455|PMID:25119025)
UniProt PMID:23594738 PMID:24141620 PMID:25119025 MGI:5494337 MGI:5603455 NCBI chrNW_004936525:4,718,773...5,058,512 JBrowse link
G Lin28a lin-28 homolog A involved_in ISO (PMID:18951094), (PMID:19703396)
(MGI:4359358|PMID:18604195), (MGI:4359360|PMID:18292307)
UniProt PMID:18292307 PMID:18604195 PMID:18951094 PMID:19703396 MGI:4359358 MGI:4359360 NCBI chrNW_004936474:10,896,153...10,909,247 JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:19703396) UniProt PMID:19703396 NCBI chrNW_004936564:1,646,469...1,768,879 JBrowse link
G Parn poly(A)-specific ribonuclease involved_in ISO (PMID:25049417) UniProt PMID:25049417 NCBI chrNW_004936501:2,666,908...2,810,159 JBrowse link
G Snd1 staphylococcal nuclease and tudor domain containing 1 involved_in ISO (PMID:28546213) UniProt PMID:28546213 NCBI chrNW_004936479:14,848,438...15,259,735 JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:25049417) UniProt PMID:25049417 NCBI chrNW_004936475:3,266,763...3,328,209 JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (PMID:19703396) UniProt PMID:19703396 NCBI chrNW_004936522:8,468,092...8,560,453 JBrowse link
mitochondrial mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde12 phosphodiesterase 12 involved_in ISO (PMID:21245038), (PMID:21666256) UniProt PMID:21245038 PMID:21666256 NCBI chrNW_004936473:7,894,026...7,897,844 JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:20691904)
(MGI:4881376|PMID:20691904)
UniProt PMID:20691904 MGI:4881376 NCBI chrNW_004936491:1,989,429...2,032,430 JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in ISO (PMID:19864255) UniProt PMID:19864255 NCBI chrNW_004936521:9,237,081...9,264,441 JBrowse link
mitochondrial mRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase involved_in ISO (PMID:19864255) UniProt PMID:19864255 NCBI chrNW_004936521:9,237,081...9,264,441 JBrowse link
mitochondrial ncRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase involved_in ISO (PMID:19864255) UniProt PMID:19864255 NCBI chrNW_004936521:9,237,081...9,264,441 JBrowse link
mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18501193) UniProt PMID:18501193 NCBI chrNW_004936491:1,989,429...2,032,430 JBrowse link
mitochondrial RNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase involved_in ISO (PMID:19864255) UniProt PMID:19864255 NCBI chrNW_004936521:9,237,081...9,264,441 JBrowse link
mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:18771919) UniProt PMID:18771919 NCBI chrNW_004936474:18,335,536...18,371,398 JBrowse link
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:21070968), (PMID:28002401)
(MGI:4849882|PMID:21070968)
UniProt PMID:21070968 PMID:28002401 MGI:4849882 NCBI chrNW_004936597:4,884,458...4,918,041 JBrowse link
G Dxo decapping exoribonuclease involved_in ISO (PMID:29601584)
(MGI:5488528|PMID:23523372)
(MGI:6368104|PMID:28283058)
UniProt PMID:23523372 PMID:28283058 PMID:29601584 MGI:5488528 MGI:6368104 NCBI chrNW_004936727:1,576,823...1,579,158 JBrowse link
G LOC101955831 heat shock 70 kDa protein 1 involved_in ISO (PMID:10205060) UniProt PMID:10205060 NCBI chrNW_004936727:1,718,952...1,721,691 JBrowse link
G LOC101956126 heat shock 70 kDa protein 1 involved_in ISO (PMID:10205060) UniProt PMID:10205060 NCBI chrNW_004936727:1,732,323...1,735,128 JBrowse link
G LOC101960021 KH-type splicing regulatory protein acts_upstream_of_or_within ISO (MGI:5439239|PMID:22844247) MGI PMID:22844247 MGI:5439239 NCBI chrNW_004936588:3,764,401...3,774,492 JBrowse link
G LOC101965734 U8 snoRNA-decapping enzyme involved_in ISO (PMID:21070968), (PMID:21337011)
(MGI:4849882|PMID:21070968)
UniProt PMID:21070968 PMID:21337011 MGI:4849882 NCBI chrNW_004936529:4,825,277...4,827,011 JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:12515382) MGI PMID:12515382 NCBI chrNW_004936727:1,746,072...1,751,944 JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:12515382) MGI PMID:12515382 NCBI chrNW_004936478:8,541,293...8,545,280 JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:12515382) MGI PMID:12515382 NCBI chrNW_004936535:3,089,778...3,103,342 JBrowse link
G Mettl14 methyltransferase like 14 involved_in ISO (MGI:5927282|PMID:28965759) UniProt PMID:28965759 MGI:5927282 NCBI chrNW_004936869:568,324...589,972 JBrowse link
G Mettl16 methyltransferase like 16 involved_in ISO (MGI:6114846|PMID:29262316) UniProt PMID:29262316 MGI:6114846 NCBI chrNW_004936538:8,470,057...8,541,620 JBrowse link
G Mettl3 methyltransferase like 3 involved_in ISO (MGI:5927282|PMID:28965759), (MGI:6094929|PMID:28792938), (MGI:6095345|PMID:28637692) UniProt PMID:28637692 PMID:28792938 PMID:28965759 MGI:5927282 MGI:6094929 MGI:6095345 NCBI chrNW_004936880:646,835...661,312 JBrowse link
G Nanos2 nanos C2HC-type zinc finger 2 involved_in ISO (MGI:4431145|PMID:20133598) UniProt PMID:20133598 MGI:4431145 NCBI chrNW_004936706:2,232,265...2,232,657 JBrowse link
G Nudt12 nudix hydrolase 12 involved_in ISO (MGI:6368680|PMID:31101919) UniProt PMID:31101919 MGI:6368680 NCBI chrNW_004936523:964,858...979,118 JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:12721301), (PMID:16055741) UniProt PMID:12721301 PMID:16055741 NCBI chrNW_004936491:1,989,429...2,032,430 JBrowse link
G Rida reactive intermediate imine deaminase A homolog involved_in ISO (PMID:30930054) UniProt PMID:30930054 NCBI chrNW_004936470:44,710,481...44,721,159 JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein 2 involved_in ISO (PMID:27558897), (PMID:30559377), (PMID:30930054)
(MGI:6316439|PMID:29855337), (MGI:6316688|PMID:30065315), (MGI:6317061|PMID:30150673)
UniProt PMID:27558897 PMID:29855337 PMID:30065315 PMID:30150673 PMID:30559377 PMID:30930054 MGI:6316439 MGI:6316688 MGI:6317061 NCBI chrNW_004936474:12,791,121...12,827,122 JBrowse link
G Zc3h12d zinc finger CCCH-type containing 12D acts_upstream_of_or_within ISO (MGI:5567042|PMID:24415781) MGI PMID:24415781 MGI:5567042 NCBI chrNW_004936489:2,454,889...2,472,392 JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in
acts_upstream_of_or_within
ISO (PMID:10330172), (PMID:20221403)
(PMID:10751406), (PMID:11782475)
UniProt
MGI
PMID:10330172 PMID:10751406 PMID:11782475 PMID:20221403 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 involved_in ISO (MGI:5320815|PMID:22367205) UniProt PMID:22367205 MGI:5320815 NCBI chrNW_004936508:8,617,185...8,620,823 JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 acts_upstream_of_or_within ISO (MGI:49288|PMID:1370712) MGI PMID:1370712 MGI:49288 NCBI chrNW_004936470:24,315,371...24,476,063 JBrowse link
mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP Elav-like family member 1 involved_in ISO PMID:30508596 ARUK-UCL PMID:30508596 RGD:38501076 NCBI chrNW_004936562:1,699,774...1,785,285 JBrowse link
G Cnot6l CCR4-NOT transcription complex subunit 6 like acts_upstream_of_or_within ISO (MGI:3828348|PMID:17452450) MGI PMID:17452450 MGI:3828348 NCBI chrNW_004936676:1,401,428...1,474,167 JBrowse link
G Fto FTO alpha-ketoglutarate dependent dioxygenase involved_in ISO (PMID:28002401), (PMID:30197295) UniProt PMID:28002401 PMID:30197295 NCBI chrNW_004936475:6,321,725...6,689,410 JBrowse link
G Gigyf2 GRB10 interacting GYF protein 2 involved_in ISO (PMID:27157137) ParkinsonsUK-UCL PMID:27157137 NCBI chrNW_004936525:4,301,003...4,432,125 JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:15798208 RGD:9854643 NCBI chrNW_004936474:8,531,434...8,567,734 JBrowse link
G Mettl14 methyltransferase like 14 involved_in ISO (MGI:5559905|PMID:24394384), (MGI:5927282|PMID:28965759) UniProt PMID:24394384 PMID:28965759 MGI:5559905 MGI:5927282 NCBI chrNW_004936869:568,324...589,972 JBrowse link
G Mettl16 methyltransferase like 16 involved_in ISO (MGI:6114846|PMID:29262316) UniProt PMID:29262316 MGI:6114846 NCBI chrNW_004936538:8,470,057...8,541,620 JBrowse link
G Mettl3 methyltransferase like 3 involved_in ISO (MGI:5559905|PMID:24394384), (MGI:5621227|PMID:25569111), (MGI:5621254|PMID:25456834), (MGI:5927282|PMID:28965759), (MGI:6094929|PMID:28792938), (MGI:6095345|PMID:28637692) UniProt PMID:24394384 PMID:25456834 PMID:25569111 PMID:28637692 PMID:28792938 PMID:28965759 MGI:5559905 MGI:5621227 MGI:5621254 MGI:5927282 MGI:6094929 MGI:6095345 NCBI chrNW_004936880:646,835...661,312 JBrowse link
G Pum1 pumilio RNA binding family member 1 involved_in ISO (MGI:5640888|PMID:25768905) UniProt PMID:25768905 MGI:5640888 NCBI chrNW_004936474:14,243,325...14,363,461 JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:29104163) UniProt PMID:29104163 NCBI chrNW_004936552:3,291,727...3,304,332 JBrowse link
G Rida reactive intermediate imine deaminase A homolog involved_in ISO (PMID:30930054) UniProt PMID:30930054 NCBI chrNW_004936470:44,710,481...44,721,159 JBrowse link
G Rock1 Rho associated coiled-coil containing protein kinase 1 involved_in ISO (MGI:6271078|PMID:29353861) ARUK-UCL PMID:29353861 MGI:6271078 NCBI chrNW_004936550:730,462...874,601 JBrowse link
G Rock2 Rho associated coiled-coil containing protein kinase 2 involved_in ISO (MGI:6271078|PMID:29353861) ARUK-UCL PMID:29353861 MGI:6271078 NCBI chrNW_004936532:7,142,580...7,284,722 JBrowse link
G Ythdf1 YTH N6-methyladenosine RNA binding protein 1 involved_in ISO (PMID:32492408)
(MGI:6490006|PMID:32943573)
UniProt PMID:32492408 PMID:32943573 MGI:6490006 NCBI chrNW_004936514:10,587,877...10,603,373 JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein 2 involved_in ISO (PMID:27558897), (PMID:30559377), (PMID:30930054), (PMID:32492408)
(MGI:6316439|PMID:29855337), (MGI:6316688|PMID:30065315), (MGI:6317061|PMID:30150673), (MGI:6490006|PMID:32943573), (MGI:6508516|PMID:31959747)
(PMID:28106072), (PMID:32169943)
UniProt PMID:27558897 PMID:28106072 PMID:29855337 PMID:30065315 PMID:30150673 PMID:30559377 PMID:30930054 PMID:31959747 PMID:32169943 PMID:32492408 PMID:32943573 MGI:6316439 MGI:6316688 MGI:6317061 MGI:6490006 MGI:6508516 NCBI chrNW_004936474:12,791,121...12,827,122 JBrowse link
G Ythdf3 YTH N6-methyladenosine RNA binding protein 3 involved_in ISO (PMID:28106072)
(MGI:6490006|PMID:32943573)
(PMID:32492408)
UniProt PMID:28106072 PMID:32492408 PMID:32943573 MGI:6490006 NCBI chrNW_004936496:10,323,338...10,362,150 JBrowse link
mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 acts_upstream_of_or_within ISO (MGI:3057047|PMID:15480992) MGI PMID:15480992 MGI:3057047 NCBI chrNW_004939393:628...6,234 JBrowse link
G Axin2 axin 2 involved_in ISO (PMID:17072303) BHF-UCL PMID:17072303 NCBI chrNW_004936541:7,155,963...7,242,466 JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:5439239|PMID:22844247) MGI PMID:22844247 MGI:5439239 NCBI chrNW_004936846:528,768...584,599 JBrowse link
G E2f1 E2F transcription factor 1 involved_in ISO (PMID:15766563) BHF-UCL PMID:15766563 NCBI chrNW_004936561:6,894,827...6,901,058 JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:24335285), (PMID:32354837) UniProt PMID:24335285 PMID:32354837 NCBI chrNW_004936755:586,366...635,294 JBrowse link
G Elavl1 ELAV like RNA binding protein 1 involved_in
acts_upstream_of_or_within
ISO (PMID:19029303)
(PMID:21613615)
(PMID:31358969)
(MGI:3037407|PMID:14976220), (MGI:5287957|PMID:21613615)
(MGI:5922838|PMID:27609837)
(MGI:5559905|PMID:24394384)
UniProt
MGI
CACAO
PMID:14976220 PMID:19029303 PMID:21613615 PMID:24394384 PMID:27609837 PMID:31358969 MGI:3037407 MGI:5287957 MGI:5559905 MGI:5922838 NCBI chrNW_004936588:4,931,665...4,959,032 JBrowse link
G Fus FUS RNA binding protein acts_upstream_of_or_within ISO (PMID:27378374) MGI PMID:27378374 NCBI chrNW_004936501:13,529,732...13,541,102 JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in ISO (PMID:12358785) BHF-UCL PMID:12358785 NCBI chrNW_004936518:4,291,391...4,310,752 JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:15192077 RGD:1357938 NCBI chrNW_004936738:2,096,370...2,115,135 JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in ISO (PMID:17174306) UniProt PMID:17174306 NCBI chrNW_004936526:6,014,745...6,022,213 JBrowse link
G Ikbke inhibitor of nuclear factor kappa B kinase subunit epsilon involved_in ISO (MGI:5291883|PMID:21822257) MGI PMID:21822257 MGI:5291883 NCBI chrNW_004936557:6,066,207...6,090,767 JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator involved_in ISO (PMID:25940091), (PMID:28673543) UniProt PMID:25940091 PMID:28673543 NCBI chrNW_004936515:8,039,887...8,125,006 JBrowse link
G LOC101976840 cold inducible RNA binding protein involved_in ISO (PMID:11574538) UniProt PMID:11574538 NCBI chrNW_004936588:636,041...639,564 JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 acts_upstream_of_or_within ISO (MGI:2158083|PMID:11741878) MGI PMID:11741878 MGI:2158083 NCBI chrNW_004936557:5,867,182...5,911,207 JBrowse link
G Meioc meiosis specific with coiled-coil domain involved_in ISO (MGI:5770021|PMID:26742488) UniProt PMID:26742488 MGI:5770021 NCBI chrNW_004936541:1,064,702...1,066,742 JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO RGD PMID:21073857 RGD:10040969 NCBI chrNW_004936474:158,376...282,310 JBrowse link
G Noct nocturnin involved_in ISO (MGI:5308514|PMID:22073225) UniProt PMID:22073225 MGI:5308514 NCBI chrNW_004936535:8,504,518...8,509,376 JBrowse link
G Qki QKI, KH domain containing RNA binding ISO RGD PMID:16855020 RGD:10045995 NCBI chrNW_004936489:13,901,066...14,000,652 JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:29104163) UniProt PMID:29104163 NCBI chrNW_004936552:3,291,727...3,304,332 JBrowse link
G Rbm46 RNA binding motif protein 46 acts_upstream_of_or_within ISO (MGI:5644240|PMID:25397698) MGI PMID:25397698 MGI:5644240 NCBI chrNW_004936576:1,532,036...1,574,858 JBrowse link
G Slc11a1 solute carrier family 11 member 1 acts_upstream_of_or_within ISO (MGI:85148|PMID:9009318) MGI PMID:9009318 MGI:85148 NCBI chrNW_004936569:888,309...895,991 JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in ISO (MGI:5291882|PMID:21822258) MGI PMID:21822258 MGI:5291882 NCBI chrNW_004936490:5,055,258...5,059,118 JBrowse link
G Taf15 TATA-box binding protein associated factor 15 acts_upstream_of_or_within ISO (PMID:27378374) MGI PMID:27378374 NCBI chrNW_004936490:199,226...230,190 JBrowse link
G Tent5c terminal nucleotidyltransferase 5C involved_in ISO (PMID:28931820)
(MGI:5926094|PMID:28931820)
UniProt PMID:28931820 MGI:5926094 NCBI chrNW_004936627:2,709,633...2,728,568 JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in ISO (PMID:18794151) UniProt PMID:18794151 NCBI chrNW_004936474:18,691,872...18,749,217 JBrowse link
G Traf2 TNF receptor associated factor 2 involved_in ISO (MGI:5291882|PMID:21822258) MGI PMID:21822258 MGI:5291882 NCBI chrNW_004936669:1,004,891...1,034,913 JBrowse link
G Traf3ip2 TRAF3 interacting protein 2 involved_in ISO (MGI:4355787|PMID:17785852)
(MGI:5291882|PMID:21822258)
MGI PMID:17785852 PMID:21822258 MGI:4355787 MGI:5291882 NCBI chrNW_004936679:308,508...348,561 JBrowse link
G Traf5 TNF receptor associated factor 5 involved_in ISO (MGI:5291882|PMID:21822258) MGI PMID:21822258 MGI:5291882 NCBI chrNW_004936557:1,930,791...1,971,853 JBrowse link
G Vegfa vascular endothelial growth factor A ISO RGD PMID:12881220 RGD:1580563 NCBI chrNW_004936476:16,245,134...16,261,180 JBrowse link
G Ybx1 Y-box binding protein 1 involved_in ISO (PMID:31358969) UniProt PMID:31358969 NCBI chrNW_004936474:24,026,459...24,047,724 JBrowse link
G Ybx2 Y-box binding protein 2 acts_upstream_of_or_within ISO (MGI:3696301|PMID:17035640) MGI PMID:17035640 MGI:3696301 NCBI chrNW_004936595:574,264...579,959 JBrowse link
NAD catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt12 nudix hydrolase 12 involved_in
acts_upstream_of_or_within
ISO (PMID:12790796) MGI PMID:12790796 NCBI chrNW_004936523:964,858...979,118 JBrowse link
G Sarm1 sterile alpha and TIR motif containing 1 involved_in ISO (PMID:25908823), (PMID:27671644), (PMID:28334607), (PMID:31128467), (PMID:31439792), (PMID:31439793), (PMID:32049506), (PMID:32828421), (PMID:33053563)
(MGI:6206974|PMID:27735788), (MGI:6508517|PMID:32312889)
(MGI:6114587|PMID:28334607)
UniProt PMID:25908823 PMID:27671644 PMID:27735788 PMID:28334607 PMID:31128467 PMID:31439792 PMID:31439793 PMID:32049506 PMID:32312889 PMID:32828421 PMID:33053563 MGI:6114587 MGI:6206974 MGI:6508517 NCBI chrNW_004936538:4,526,713...4,546,861 JBrowse link
G Tigd7 tigger transposable element derived 7 involved_in ISO (MGI:5426136|PMID:11011142) UniProt PMID:11011142 MGI:5426136 NCBI chrNW_004936694:938,233...943,347 JBrowse link
NADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt12 nudix hydrolase 12 involved_in
acts_upstream_of_or_within
ISO (PMID:12790796) MGI PMID:12790796 NCBI chrNW_004936523:964,858...979,118 JBrowse link
G Nudt13 nudix hydrolase 13 involved_in ISO (MGI:6368098|PMID:28755312) UniProt PMID:28755312 MGI:6368098 NCBI chrNW_004936521:5,948,517...5,965,695 JBrowse link
ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:26950371) BHF-UCL PMID:26950371 NCBI chrNW_004936475:3,266,763...3,328,209 JBrowse link
negative regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl16 methyltransferase like 16 involved_in ISO (PMID:28525753) UniProt PMID:28525753 NCBI chrNW_004936538:8,470,057...8,541,620 JBrowse link
negative regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffa DNA fragmentation factor subunit alpha acts_upstream_of_or_within ISO (MGI:2182584|PMID:10601318), (MGI:3029597|PMID:14663139)
(PMID:15572351)
MGI PMID:10601318 PMID:14663139 PMID:15572351 MGI:2182584 MGI:3029597 NCBI chrNW_004936623:4,296,995...4,307,069 JBrowse link
G Nmnat1 nicotinamide nucleotide adenylyltransferase 1 ISO RGD PMID:27184051 RGD:13781945 NCBI chrNW_004936623:3,862,234...3,891,849 JBrowse link
G Pam16 presequence translocase associated motor 16 ISO RGD PMID:24069394 RGD:13462066 NCBI chrNW_004936694:153,958...161,635 JBrowse link
negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:32354837) UniProt PMID:32354837 NCBI chrNW_004936755:586,366...635,294 JBrowse link
negative regulation of DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rgn regucalcin ISO RGD PMID:2001740 RGD:9590215 NCBI chrNW_004936502:12,872,938...12,891,270 JBrowse link
negative regulation of miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent2 terminal nucleotidyltransferase 2 involved_in ISO (PMID:23200856) UniProt PMID:23200856 NCBI chrNW_004936549:7,401,532...7,465,264 JBrowse link
negative regulation of mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101968011 SRA stem-loop interacting RNA binding protein acts_upstream_of_or_within ISO (MGI:5438202|PMID:22045337) MGI PMID:22045337 MGI:5438202 NCBI chrNW_004936488:6,486,807...6,494,555 JBrowse link
G Lrpprc leucine rich pentatricopeptide repeat containing acts_upstream_of_or_within ISO (MGI:5438202|PMID:22045337)
(MGI:5301479|PMID:21880015)
MGI PMID:21880015 PMID:22045337 MGI:5301479 MGI:5438202 NCBI chrNW_004936508:7,961,079...8,068,228 JBrowse link
negative regulation of mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmr1 FMRP translational regulator 1 involved_in ISO (PMID:25225333) CAFA PMID:25225333 NCBI chrNW_004936513:1,290,038...1,327,850 JBrowse link
G Pkp1 plakophilin 1 involved_in ISO (PMID:25225333) CAFA PMID:25225333 NCBI chrNW_004936567:3,089,902...3,138,252 JBrowse link
G Pkp3 plakophilin 3 involved_in ISO (PMID:25225333) CAFA PMID:25225333 NCBI chrNW_004936888:270,883...280,118 JBrowse link
negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx34 DExH-box helicase 34 involved_in ISO (PMID:23828042) UniProt PMID:23828042 NCBI chrNW_004936664:1,056,003...1,082,282 JBrowse link
G Nbas NBAS subunit of NRZ tethering complex involved_in ISO (PMID:23828042) UniProt PMID:23828042 NCBI chrNW_004936493:14,940,592...15,241,209 JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 involved_in ISO (PMID:18447585) UniProt PMID:18447585 NCBI chrNW_004936470:42,628,890...42,670,311 JBrowse link
G Secisbp2 SECIS binding protein 2 acts_upstream_of_or_within ISO (MGI:5582859|PMID:24274065) MGI PMID:24274065 MGI:5582859 NCBI chrNW_004936780:264,366...300,999 JBrowse link
negative regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent4a terminal nucleotidyltransferase 4A involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chrNW_004936634:667,170...706,901 JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chrNW_004936475:3,266,763...3,328,209 JBrowse link
G Tob1 transducer of ERBB2, 1 involved_in ISO (PMID:18377426) UniProt PMID:18377426 NCBI chrNW_004936490:10,876,113...10,880,267 JBrowse link
negative regulation of RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrde2 NRDE-2, necessary for RNA interference, domain containing involved_in ISO (PMID:30842217) UniProt PMID:30842217 NCBI chrNW_004936488:17,473,787...17,519,278 JBrowse link
nicotinamide riboside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101970144 purine nucleoside phosphorylase involved_in ISO (PMID:19001417) UniProt PMID:19001417 NCBI chrNW_004936877:686,539...692,832 JBrowse link
G LOC101972142 methylthioadenosine phosphorylase NOT|involved_in ISO (PMID:19001417) UniProt PMID:19001417 NCBI chrNW_004936652:3,431,588...3,468,770 JBrowse link
nitrate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101965545 NADPH--cytochrome P450 reductase ISO RGD PMID:16527817 RGD:4889831 NCBI chrNW_004936543:2,275,981...2,327,931 JBrowse link
nitric oxide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101965545 NADPH--cytochrome P450 reductase ISO RGD PMID:19152507 RGD:2316786 NCBI chrNW_004936543:2,275,981...2,327,931 JBrowse link
nuclear histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssb small RNA binding exonuclease protection factor La involved_in ISO (PMID:9154801) CAFA PMID:9154801 NCBI chrNW_004936509:286,397...295,779 JBrowse link
nuclear mRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dxo decapping exoribonuclease involved_in ISO (MGI:5488528|PMID:23523372) UniProt PMID:23523372 MGI:5488528 NCBI chrNW_004936727:1,576,823...1,579,158 JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004936474:130,735...153,608 JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004936470:8,097,218...8,099,319 JBrowse link
G Exosc9 exosome component 9 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004936662:1,062,461...1,073,425 JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004936540:3,959,156...4,073,785 JBrowse link
nuclear polyadenylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:16934922) UniProt PMID:16934922 NCBI chrNW_004936491:1,989,429...2,032,430 JBrowse link
nuclear polyadenylation-dependent rRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 involved_in ISO (PMID:16455498) UniProt PMID:16455498 NCBI chrNW_004936474:130,735...153,608 JBrowse link
G Exosc9 exosome component 9 involved_in ISO (PMID:16455498) UniProt PMID:16455498 NCBI chrNW_004936662:1,062,461...1,073,425 JBrowse link
nuclear retention of unspliced pre-mRNA at the site of transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 involved_in ISO (PMID:20699273) UniProt PMID:20699273 NCBI chrNW_004936474:130,735...153,608 JBrowse link
nuclear-transcribed mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx5 DEAD-box helicase 5 involved_in ISO (PMID:23788676) UniProt PMID:23788676 NCBI chrNW_004936541:5,005,211...5,013,439 JBrowse link
G Dhx34 DExH-box helicase 34 involved_in ISO (PMID:23828042) UniProt PMID:23828042 NCBI chrNW_004936664:1,056,003...1,082,282 JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004936474:130,735...153,608 JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004936470:8,097,218...8,099,319 JBrowse link
G Exosc9 exosome component 9 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004936662:1,062,461...1,073,425 JBrowse link
G Nbas NBAS subunit of NRZ tethering complex involved_in ISO (PMID:23828042) UniProt PMID:23828042 NCBI chrNW_004936493:14,940,592...15,241,209 JBrowse link
G Nbdy negative regulator of P-body association involved_in ISO (PMID:27918561) UniProt PMID:27918561 NCBI chrNW_004936819:323,785...325,903 JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO RGD PMID:15039777 RGD:10045958 NCBI chrNW_004936588:316,348...326,895 JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (PMID:25026078)
(MGI:4819285|PMID:20639877)
UniProt
BHF-UCL
PMID:20639877 PMID:25026078 MGI:4819285 NCBI chrNW_004936481:13,919,006...13,973,868 JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in ISO (PMID:20123736) UniProt PMID:20123736 NCBI chrNW_004936474:18,691,872...18,749,217 JBrowse link
G Upf1 UPF1 RNA helicase and ATPase involved_in ISO (PMID:23828042) UniProt PMID:23828042 NCBI chrNW_004936596:2,469,444...2,505,688 JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004936540:3,959,156...4,073,785 JBrowse link
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6l CCR4-NOT transcription complex subunit 6 like acts_upstream_of_or_within ISO (MGI:3828348|PMID:17452450) MGI PMID:17452450 MGI:3828348 NCBI chrNW_004936676:1,401,428...1,474,167 JBrowse link
G Pde12 phosphodiesterase 12 involved_in ISO (PMID:21245038) UniProt PMID:21245038 NCBI chrNW_004936473:7,894,026...7,897,844 JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671) UniProt PMID:26000482 PMID:26255671 MGI:5706859 MGI:5751631 NCBI chrNW_004936481:13,919,006...13,973,868 JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in
acts_upstream_of_or_within
ISO (PMID:23644599)
(MGI:3589099|PMID:15814898)
UniProt
MGI
PMID:15814898 PMID:23644599 MGI:3589099 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 acts_upstream_of_or_within ISO (MGI:3589099|PMID:15814898) MGI PMID:15814898 MGI:3589099 NCBI chrNW_004936495:12,045,679...12,050,737 JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 acts_upstream_of_or_within ISO (MGI:3589099|PMID:15814898) MGI PMID:15814898 MGI:3589099 NCBI chrNW_004936508:8,617,185...8,620,823 JBrowse link
nuclear-transcribed mRNA catabolic process, deadenylation-independent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp36 ZFP36 ring finger protein involved_in ISO (PMID:11279239) UniProt PMID:11279239 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in ISO PMID:11279239 UniProt PMID:11279239 RGD:11344953 NCBI chrNW_004936495:12,045,679...12,050,737 JBrowse link
nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upf1 UPF1 RNA helicase and ATPase involved_in ISO (PMID:26255671) UniProt PMID:26255671 NCBI chrNW_004936596:2,469,444...2,505,688 JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A involved_in ISO (MGI:5751631|PMID:26255671) UniProt PMID:26255671 MGI:5751631 NCBI chrNW_004936474:19,714,145...19,722,512 JBrowse link
nuclear-transcribed mRNA catabolic process, exonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3l2 DIS3 like 3'-5' exoribonuclease 2 involved_in ISO (PMID:23756462) UniProt PMID:23756462 NCBI chrNW_004936525:4,718,773...5,058,512 JBrowse link
nuclear-transcribed mRNA catabolic process, no-go decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6 CCR4-NOT transcription complex subunit 6 involved_in ISO (PMID:15314026) UniProt PMID:15314026 NCBI chrNW_004936739:308,117...384,600 JBrowse link
G Csde1 cold shock domain containing E1 involved_in ISO (PMID:15314026) UniProt PMID:15314026 NCBI chrNW_004936627:85,894...122,592 JBrowse link
G Gtpbp2 GTP binding protein 2 acts_upstream_of_or_within ISO (MGI:5574482|PMID:25061210) MGI PMID:25061210 MGI:5574482 NCBI chrNW_004936476:16,389,659...16,397,603 JBrowse link
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctif cap binding complex dependent translation initiation factor involved_in ISO (PMID:19648179) UniProt PMID:19648179 NCBI chrNW_004936497:13,967,290...14,232,409 JBrowse link
G Eif3e eukaryotic translation initiation factor 3 subunit E involved_in ISO (PMID:17468741) UniProt PMID:17468741 NCBI chrNW_004936470:36,556,666...36,599,075 JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO (PMID:16209946) UniProt PMID:16209946 NCBI chrNW_004936594:4,148,401...4,160,290 JBrowse link
G Magoh mago homolog, exon junction complex subunit involved_in ISO (PMID:23917022)
(PMID:16209946)
HGNC
UniProt
PMID:16209946 PMID:23917022 NCBI chrNW_004936522:7,823,644...7,832,170 JBrowse link
G Magohb mago homolog B, exon junction complex subunit involved_in ISO (PMID:23917022) HGNC PMID:23917022 NCBI chrNW_004937158:128,190...157,130 JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:11551508), (PMID:17873884)
(PMID:18369367)
UniProt PMID:11551508 PMID:17873884 PMID:18369367 NCBI chrNW_004936524:6,429,735...6,465,035 JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISO (PMID:17873884), (PMID:18369367)
(PMID:11551508)
UniProt PMID:11551508 PMID:17873884 PMID:18369367 NCBI chrNW_004936833:920,683...928,047 JBrowse link
G Pnrc2 proline rich nuclear receptor coactivator 2 involved_in ISO (PMID:19150429) UniProt PMID:19150429 NCBI chrNW_004936474:9,061,672...9,065,195 JBrowse link
G Pym1 PYM homolog 1, exon junction complex associated factor involved_in ISO (PMID:19410547) UniProt PMID:19410547 NCBI chrNW_004936646:320,864...341,694 JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in ISO (PMID:16209946) UniProt PMID:16209946 NCBI chrNW_004936867:666,208...667,851 JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 involved_in ISO (PMID:16209946)
(PMID:11546874)
UniProt PMID:11546874 PMID:16209946 NCBI chrNW_004936694:1,784,396...1,794,269 JBrowse link
G Smg1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase involved_in ISO (PMID:11544179) UniProt PMID:11544179 NCBI chrNW_004936501:4,672,871...4,753,749 JBrowse link
G Smg6 SMG6 nonsense mediated mRNA decay factor involved_in ISO (PMID:18974281), (PMID:19060897), (PMID:20930030) UniProt PMID:18974281 PMID:19060897 PMID:20930030 NCBI chrNW_004936538:8,126,307...8,361,920 JBrowse link
G Smg8 SMG8 nonsense mediated mRNA decay factor involved_in ISO (PMID:19417104) UniProt PMID:19417104 NCBI chrNW_004936490:4,081,780...4,088,283 JBrowse link
G Smg9 SMG9 nonsense mediated mRNA decay factor involved_in ISO (PMID:19417104) UniProt PMID:19417104 NCBI chrNW_004936706:908,471...929,075 JBrowse link
G Upf1 UPF1 RNA helicase and ATPase involved_in ISO (PMID:18369367)
(PMID:17468741)
UniProt PMID:17468741 PMID:18369367 NCBI chrNW_004936596:2,469,444...2,505,688 JBrowse link
G Upf2 UPF2 regulator of nonsense mediated mRNA decay involved_in ISO (PMID:18369367) UniProt PMID:18369367 NCBI chrNW_004936484:3,266,196...3,381,511 JBrowse link
G Upf3a UPF3A regulator of nonsense mediated mRNA decay NOT|involved_in ISO (PMID:16601204) UniProt PMID:16601204 NCBI chrNW_004937030:243,104...258,355 JBrowse link
G Upf3b UPF3B regulator of nonsense mediated mRNA decay involved_in ISO (PMID:18369367)
(PMID:16601204)
UniProt PMID:16601204 PMID:18369367 NCBI chrNW_004936479:10,093,290...10,111,293 JBrowse link
nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6 CCR4-NOT transcription complex subunit 6 involved_in ISO (PMID:20595389) UniProt PMID:20595389 NCBI chrNW_004936739:308,117...384,600 JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 acts_upstream_of_or_within ISO (MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:3807625 NCBI chrNW_004936573:6,288,397...6,305,984 JBrowse link
G Mlh1 mutL homolog 1 acts_upstream_of_or_within ISO (MGI:1934053|PMID:11337385) MGI PMID:11337385 MGI:1934053 NCBI chrNW_004936473:26,556,636...26,600,830 JBrowse link
G Parn poly(A)-specific ribonuclease acts_upstream_of_or_within ISO (MGI:3785219|PMID:18337750) MGI PMID:18337750 MGI:3785219 NCBI chrNW_004936501:2,666,908...2,810,159 JBrowse link
G Pnldc1 PARN like ribonuclease domain containing exonuclease 1 involved_in ISO (PMID:27515512)
(MGI:5825409|PMID:27515512)
UniProt PMID:27515512 MGI:5825409 NCBI chrNW_004936489:11,289,557...11,308,136 JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in
acts_upstream_of_or_within
ISO (PMID:23644599)
(MGI:3589099|PMID:15814898)
BHF-UCL
MGI
PMID:15814898 PMID:23644599 MGI:3589099 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
nucleobase-containing small molecule catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO (PMID:10858452) UniProt PMID:10858452 NCBI chrNW_004936555:6,896,661...6,920,333 JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in ISO (PMID:11278936) UniProt PMID:11278936 NCBI chrNW_004936636:406,389...446,167 JBrowse link
nucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd3 ectonucleoside triphosphate diphosphohydrolase 3 acts_upstream_of_or_within ISO (MGI:3043501|PMID:15130768) MGI PMID:15130768 MGI:3043501 NCBI chrNW_004936473:29,348,370...29,382,258 JBrowse link
nucleoside phosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt15 nudix hydrolase 15 involved_in ISO (PMID:26238318)
(PMID:26878724)
UniProt PMID:26238318 PMID:26878724 NCBI chrNW_004936565:1,380,981...1,389,908 JBrowse link
nucleoside triphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 involved_in ISO (PMID:24467396)
(MGI:3844778|PMID:19220460)
UniProt PMID:19220460 PMID:24467396 MGI:3844778 NCBI chrNW_004936501:12,880,745...12,884,240 JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:10513816) BHF-UCL PMID:10513816 NCBI chrNW_004937067:194,375...246,607 JBrowse link
G Enpp3 ectonucleotide pyrophosphatase/phosphodiesterase 3 involved_in ISO (PMID:10513816) BHF-UCL PMID:10513816 NCBI chrNW_004937067:41,573...129,386 JBrowse link
G Entpd3 ectonucleoside triphosphate diphosphohydrolase 3 acts_upstream_of_or_within ISO (MGI:3043501|PMID:15130768) MGI PMID:15130768 MGI:3043501 NCBI chrNW_004936473:29,348,370...29,382,258 JBrowse link
G Smpdl3a sphingomyelin phosphodiesterase acid like 3A involved_in ISO (PMID:26783088) UniProt PMID:26783088 NCBI chrNW_004936802:1,070,919...1,089,222 JBrowse link
polyuridylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tut4 terminal uridylyl transferase 4 involved_in ISO (MGI:6162305|PMID:28792939) UniProt PMID:28792939 MGI:6162305 NCBI chrNW_004936522:8,468,092...8,560,453 JBrowse link
G Tut7 terminal uridylyl transferase 7 involved_in ISO (MGI:6162305|PMID:28792939) UniProt PMID:28792939 MGI:6162305 NCBI chrNW_004936680:1,693,815...1,753,641 JBrowse link
positive regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elavl4 ELAV like RNA binding protein 4 involved_in ISO (PMID:18218628) UniProt PMID:18218628 NCBI chrNW_004936522:10,349,684...10,435,963 JBrowse link
G Larp4b La ribonucleoprotein 4B involved_in ISO (PMID:26001795) FlyBase PMID:26001795 NCBI chrNW_004936484:13,238,456...13,302,962 JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:24356969) UniProt PMID:24356969 NCBI chrNW_004936552:3,291,727...3,304,332 JBrowse link
G Tent4a terminal nucleotidyltransferase 4A involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chrNW_004936634:667,170...706,901 JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chrNW_004936475:3,266,763...3,328,209 JBrowse link
positive regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator involved_in ISO (PMID:11350920) BHF-UCL PMID:11350920 NCBI chrNW_004936664:2,968,103...2,973,652 JBrowse link
G Endog endonuclease G ISO RGD PMID:16407272 RGD:9685355 NCBI chrNW_004936487:16,282,115...16,285,486 JBrowse link
G Hsf1 heat shock transcription factor 1 ISO RGD PMID:21192280 RGD:10403035 NCBI chrNW_004936470:7,927,734...7,950,805 JBrowse link
G Igfbp3 insulin like growth factor binding protein 3 ISO RGD PMID:15125883 RGD:10402776 NCBI chrNW_004936478:20,511,490...20,518,251 JBrowse link
G Il6 interleukin 6 involved_in ISO (PMID:28433754) ARUK-UCL PMID:28433754 NCBI chrNW_004936549:7,015,595...7,016,246 JBrowse link
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp36 ZFP36 ring finger protein involved_in ISO (PMID:16364915) UniProt PMID:16364915 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
positive regulation of DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase ISO RGD PMID:27895165 RGD:12879393 NCBI chrNW_004936551:359,134...534,672 JBrowse link
positive regulation of miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) CACAO PMID:18951094 NCBI chrNW_004936564:1,646,469...1,768,879 JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:20547861) UniProt PMID:20547861 NCBI chrNW_004936491:1,989,429...2,032,430 JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A involved_in ISO (PMID:22055188), (PMID:24048733) UniProt PMID:22055188 PMID:24048733 NCBI chrNW_004936474:19,714,145...19,722,512 JBrowse link
G Zswim8 zinc finger SWIM-type containing 8 involved_in ISO (PMID:33184234), (PMID:33184237)
(MGI:6508520|PMID:33184237)
UniProt PMID:33184234 PMID:33184237 MGI:6508520 NCBI chrNW_004936521:5,346,971...5,363,297 JBrowse link
positive regulation of mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grsf1 G-rich RNA sequence binding factor 1 involved_in ISO (PMID:29967381) UniProt PMID:29967381 NCBI chrNW_004936598:3,961,051...3,978,791 JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:19509288), (PMID:29967381) UniProt PMID:19509288 PMID:29967381 NCBI chrNW_004936491:1,989,429...2,032,430 JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in ISO (PMID:19509288), (PMID:29967381)
(PMID:19864255)
UniProt PMID:19509288 PMID:19864255 PMID:29967381 NCBI chrNW_004936521:9,237,081...9,264,441 JBrowse link
positive regulation of mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot1 CCR4-NOT transcription complex subunit 1 involved_in ISO (PMID:22977175) BHF-UCL PMID:22977175 NCBI chrNW_004936475:10,302,091...10,384,945 JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 involved_in ISO (PMID:23386060), (PMID:25038453) UniProt PMID:23386060 PMID:25038453 NCBI chrNW_004936573:6,288,397...6,305,984 JBrowse link
G Cnot8 CCR4-NOT transcription complex subunit 8 involved_in ISO (PMID:22977175) BHF-UCL PMID:22977175 NCBI chrNW_004936515:7,971,504...7,988,257 JBrowse link
G Gtpbp1 GTP binding protein 1 involved_in ISO PMID:21515746 UniProt PMID:21515746 RGD:8553842 NCBI chrNW_004936492:2,627,881...2,648,295 JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:15798208 RGD:9854643 NCBI chrNW_004936474:8,531,434...8,567,734 JBrowse link
G LOC101960021 KH-type splicing regulatory protein involved_in ISO (PMID:16126846) UniProt PMID:16126846 NCBI chrNW_004936588:3,764,401...3,774,492 JBrowse link
G Mov10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:24726324) UniProt PMID:24726324 NCBI chrNW_004936690:1,229,249...1,254,754 JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:16410805) RGD
UniProt
PMID:737213 PMID:16410805 RGD:11554176 NCBI chrNW_004936491:1,989,429...2,032,430 JBrowse link
G Prr5l proline rich 5 like involved_in ISO (PMID:21964062) UniProt PMID:21964062 NCBI chrNW_004936533:1,895,594...1,975,442 JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671)
(MGI:6154479|PMID:25026077)
UniProt PMID:25026077 PMID:26000482 PMID:26255671 MGI:5706859 MGI:5751631 MGI:6154479 NCBI chrNW_004936481:13,919,006...13,973,868 JBrowse link
G Upf1 UPF1 RNA helicase and ATPase involved_in ISO (PMID:25225333), (PMID:26255671)
(PMID:24726324)
UniProt PMID:24726324 PMID:25225333 PMID:26255671 NCBI chrNW_004936596:2,469,444...2,505,688 JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A involved_in ISO (PMID:19909337)
(MGI:3842851|PMID:19322177), (MGI:5706859|PMID:26000482), (MGI:5706909|PMID:23185455), (MGI:5751631|PMID:26255671)
UniProt PMID:19322177 PMID:19909337 PMID:23185455 PMID:26000482 PMID:26255671 MGI:3842851 MGI:5706859 MGI:5706909 MGI:5751631 NCBI chrNW_004936474:19,714,145...19,722,512 JBrowse link
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 involved_in ISO PMID:17185417
(PMID:21876179)
UniProt PMID:17185417 PMID:21876179 RGD:8553432 NCBI chrNW_004936592:3,321,564...3,379,015 JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in ISO (MGI:5795825|PMID:15634918) UniProt PMID:15634918 MGI:5795825 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chrNW_004936470:10,641,109...10,690,587 JBrowse link
G Cnot1 CCR4-NOT transcription complex subunit 1 involved_in ISO (PMID:21278420) UniProt PMID:21278420 NCBI chrNW_004936475:10,302,091...10,384,945 JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 involved_in ISO (PMID:21278420)
(MGI:5486537|PMID:19716330)
UniProt PMID:19716330 PMID:21278420 MGI:5486537 NCBI chrNW_004936573:6,288,397...6,305,984 JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chrNW_004936601:2,470,021...2,616,451 JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO (PMID:14731398) UniProt PMID:14731398 NCBI chrNW_004936519:1,946,684...1,987,036 JBrowse link
G Nanos2 nanos C2HC-type zinc finger 2 involved_in ISO (PMID:24736845) BHF-UCL PMID:24736845 NCBI chrNW_004936706:2,232,265...2,232,657 JBrowse link
G Nanos3 nanos C2HC-type zinc finger 3 involved_in ISO (PMID:24736845) BHF-UCL PMID:24736845 NCBI chrNW_004936659:2,590,291...2,593,482 JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chrNW_004936470:42,628,890...42,670,311 JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in ISO (PMID:19716330) UniProt PMID:19716330 NCBI chrNW_004936492:1,461,572...1,697,500 JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C involved_in ISO (PMID:21984185) UniProt PMID:21984185 NCBI chrNW_004936594:2,656,079...2,741,254 JBrowse link
G Tob1 transducer of ERBB2, 1 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chrNW_004936490:10,876,113...10,880,267 JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in ISO (PMID:12748283)
(MGI:5487524|PMID:21278420)
UniProt PMID:12748283 PMID:21278420 MGI:5487524 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in ISO PMID:12748283 UniProt PMID:12748283 RGD:11344945 NCBI chrNW_004936495:12,045,679...12,050,737 JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 involved_in ISO (MGI:5320815|PMID:22367205) UniProt PMID:22367205 MGI:5320815 NCBI chrNW_004936508:8,617,185...8,620,823 JBrowse link
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chrNW_004936470:10,641,109...10,690,587 JBrowse link
G Btg2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO (PMID:18337750) MGI PMID:18337750 NCBI chrNW_004936567:1,310,525...1,314,469 JBrowse link
G Cnot1 CCR4-NOT transcription complex subunit 1 involved_in ISO (PMID:23644599)
(PMID:21278420)
BHF-UCL
UniProt
PMID:21278420 PMID:23644599 NCBI chrNW_004936475:10,302,091...10,384,945 JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 involved_in ISO (PMID:21278420)
(MGI:5486537|PMID:19716330)
UniProt PMID:19716330 PMID:21278420 MGI:5486537 NCBI chrNW_004936573:6,288,397...6,305,984 JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chrNW_004936601:2,470,021...2,616,451 JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:32354837) UniProt PMID:32354837 NCBI chrNW_004936755:586,366...635,294 JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chrNW_004936470:42,628,890...42,670,311 JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in ISO (PMID:19716330) UniProt PMID:19716330 NCBI chrNW_004936492:1,461,572...1,697,500 JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C involved_in ISO (PMID:21984185) UniProt PMID:21984185 NCBI chrNW_004936594:2,656,079...2,741,254 JBrowse link
G Tob1 transducer of ERBB2, 1 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chrNW_004936490:10,876,113...10,880,267 JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in ISO (PMID:10330172)
(MGI:5487524|PMID:21278420)
(MGI:5795819|PMID:20595389)
UniProt PMID:10330172 PMID:20595389 PMID:21278420 MGI:5487524 MGI:5795819 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
pre-mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zpr1 ZPR1 zinc finger involved_in ISO (PMID:11283611) UniProt PMID:11283611 NCBI chrNW_004936542:2,058,048...2,067,468 JBrowse link
propionyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 involved_in ISO (MGI:6450264|PMID:18799520) UniProt PMID:18799520 MGI:6450264 NCBI chrNW_004936475:26,079,298...26,095,466 JBrowse link
purine deoxyribonucleoside triphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt15 nudix hydrolase 15 acts_upstream_of_or_within ISO (MGI:2663996|PMID:12767940) MGI PMID:12767940 MGI:2663996 NCBI chrNW_004936565:1,380,981...1,389,908 JBrowse link
purine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in ISO (PMID:11988088) UniProt PMID:11988088 NCBI chrNW_004936537:1,660,461...2,439,305 JBrowse link
purine nucleoside monophosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c1a 5'-nucleotidase, cytosolic IA acts_upstream_of_or_within ISO (MGI:5295913|PMID:21873433) MGI PMID:21873433 MGI:5295913 NCBI chrNW_004936474:21,535,197...21,542,417 JBrowse link
purine nucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt15 nudix hydrolase 15 involved_in ISO (PMID:26878724) UniProt PMID:26878724 NCBI chrNW_004936565:1,380,981...1,389,908 JBrowse link
purine ribonucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enpp4 ectonucleotide pyrophosphatase/phosphodiesterase 4 involved_in ISO (PMID:22995898) UniProt PMID:22995898 NCBI chrNW_004936476:14,188,328...14,204,063 JBrowse link
purine ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 acts_upstream_of_or_within ISO (MGI:2178511|PMID:11929769) MGI PMID:11929769 MGI:2178511 NCBI chrNW_004936669:901,192...906,765 JBrowse link
purine ribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hint1 histidine triad nucleotide binding protein 1 involved_in ISO (PMID:16835243) UniProt PMID:16835243 NCBI chrNW_004936647:3,843,544...3,849,428 JBrowse link
pyridoxal phosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101971587 pyridoxal phosphatase involved_in ISO (PMID:14522954), (PMID:8132548)
(MGI:5545856|PMID:24338687), (MGI:5545857|PMID:24338473), (MGI:6695679|PMID:25783190)
UniProt PMID:8132548 PMID:14522954 PMID:24338473 PMID:24338687 PMID:25783190 MGI:5545856 MGI:5545857 MGI:6695679 NCBI chrNW_004936492:3,420,590...3,426,764 JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:10681516) UniProt PMID:10681516 NCBI chrNW_004936594:430,274...432,027 JBrowse link
pyrimidine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase acts_upstream_of_or_within
involved_in
ISO (MGI:2657070|PMID:12651209)
(PMID:11988088)
RGD
MGI
UniProt
PMID:1629785 PMID:11988088 PMID:12651209 MGI:2657070 RGD:1599794 NCBI chrNW_004936537:1,660,461...2,439,305 JBrowse link
G Dpys dihydropyrimidinase involved_in ISO (PMID:9718352) UniProt PMID:9718352 NCBI chrNW_004936470:39,564,431...39,637,394 JBrowse link
pyrimidine nucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upb1 beta-ureidopropionase 1 involved_in ISO (PMID:22525402) UniProt PMID:22525402 NCBI chrNW_004936619:668,380...713,720 JBrowse link
quinolinate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Qprt quinolinate phosphoribosyltransferase involved_in
acts_upstream_of_or_within
ISO (PMID:24038671), (PMID:3409840), (PMID:9473669)
(PMID:9473669)
UniProt
MGI
PMID:3409840 PMID:9473669 PMID:24038671 NCBI chrNW_004936501:12,743,634...12,763,068 JBrowse link
regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aifm1 apoptosis inducing factor mitochondria associated 1 acts_upstream_of_or_within ISO (MGI:3577148|PMID:15703386) MGI PMID:15703386 MGI:3577148 NCBI chrNW_004936479:1,441,508...1,477,133 JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 acts_upstream_of_or_within ISO (MGI:3577148|PMID:15703386) MGI PMID:15703386 MGI:3577148 NCBI chrNW_004936492:14,818,561...14,902,231 JBrowse link
G Cidea cell death inducing DFFA like effector a involved_in ISO (MGI:1203887|PMID:9564035) BHF-UCL PMID:9564035 MGI:1203887 NCBI chrNW_004936626:230,372...246,893 JBrowse link
regulation of mitochondrial mRNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fastkd1 FAST kinase domains 1 involved_in ISO (PMID:28335001) UniProt PMID:28335001 NCBI chrNW_004936509:65,090...101,687 JBrowse link
G Fastkd3 FAST kinase domains 3 involved_in ISO (PMID:27789713) UniProt PMID:27789713 NCBI chrNW_004936643:369,145...379,691 JBrowse link
G Pde12 phosphodiesterase 12 involved_in ISO (PMID:21666256) UniProt PMID:21666256 NCBI chrNW_004936473:7,894,026...7,897,844 JBrowse link
G Tbrg4 transforming growth factor beta regulator 4 involved_in ISO (PMID:28335001) UniProt PMID:28335001 NCBI chrNW_004936478:19,906,227...19,915,815 JBrowse link
regulation of mRNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh5 alkB homolog 5, RNA demethylase involved_in ISO (MGI:6111276|PMID:29279410) UniProt PMID:29279410 MGI:6111276 NCBI chrNW_004936741:1,729,707...1,756,108 JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in ISO (PMID:19401441) UniProt PMID:19401441 NCBI chrNW_004936877:666,545...669,351 JBrowse link
G Brf1 BRF1 RNA polymerase III transcription initiation factor subunit acts_upstream_of_or_within ISO (MGI:3037407|PMID:14976220) MGI PMID:14976220 MGI:3037407 NCBI chrNW_004936621:265,834...329,255 JBrowse link
G Cacng7 calcium voltage-gated channel auxiliary subunit gamma 7 ISO RGD PMID:18923037 RGD:13524564 NCBI chrNW_004936994:107,973...126,317 JBrowse link
G Calcr calcitonin receptor acts_upstream_of_or_within ISO (MGI:85609|PMID:9002981) MGI PMID:9002981 MGI:85609 NCBI chrNW_004936803:423,558...466,762 JBrowse link
G Carhsp1 calcium regulated heat stable protein 1 involved_in ISO (MGI:5320273|PMID:21078874) UniProt PMID:21078874 MGI:5320273 NCBI chrNW_004936530:7,652,560...7,662,598 JBrowse link
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:28002401) UniProt PMID:28002401 NCBI chrNW_004936597:4,884,458...4,918,041 JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO (PMID:18279852) UniProt PMID:18279852 NCBI chrNW_004936519:1,946,684...1,987,036 JBrowse link
G Elavl4 ELAV like RNA binding protein 4 ISO RGD PMID:22736542 RGD:9586719 NCBI chrNW_004936522:10,349,684...10,435,963 JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in ISO (MGI:3710908|PMID:17417632) UniProt PMID:17417632 MGI:3710908 NCBI chrNW_004936513:1,290,038...1,327,850 JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D acts_upstream_of_or_within ISO (MGI:3037407|PMID:14976220) MGI PMID:14976220 MGI:3037407 NCBI chrNW_004936738:2,096,370...2,115,135 JBrowse link
G LOC101960021 KH-type splicing regulatory protein involved_in ISO (PMID:16126846) UniProt PMID:16126846 NCBI chrNW_004936588:3,764,401...3,774,492 JBrowse link
G Pabpc4 poly(A) binding protein cytoplasmic 4 acts_upstream_of_or_within ISO (MGI:5585232|PMID:24469397) MGI PMID:24469397 MGI:5585232 NCBI chrNW_004936474:21,453,244...21,468,059 JBrowse link
G Pcbp4 poly(rC) binding protein 4 acts_upstream_of_or_within ISO (PMID:20817677) MGI PMID:20817677 NCBI chrNW_004936529:3,304,171...3,308,422 JBrowse link
G Pcid2 PCI domain containing 2 involved_in ISO (PMID:20870947) UniProt PMID:20870947 NCBI chrNW_004936472:440,440...464,116 JBrowse link
G Pum1 pumilio RNA binding family member 1 involved_in ISO (PMID:26724866) UniProt PMID:26724866 NCBI chrNW_004936474:14,243,325...14,363,461 JBrowse link
G Pum2 pumilio RNA binding family member 2 involved_in ISO (PMID:26724866) UniProt PMID:26724866 NCBI chrNW_004936493:11,067,318...11,154,133 JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (MGI:4999688|PMID:20977548) UniProt PMID:20977548 MGI:4999688 NCBI chrNW_004936552:3,291,727...3,304,332 JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (MGI:5284769|PMID:18172933) BHF-UCL PMID:18172933 MGI:5284769 NCBI chrNW_004936481:13,919,006...13,973,868 JBrowse link
G Rnasel ribonuclease L acts_upstream_of_or_within ISO (MGI:5543366|PMID:22441668) MGI PMID:22441668 MGI:5543366 NCBI chrNW_004936481:7,165,400...7,177,342 JBrowse link
G Scgb1a1 secretoglobin family 1A member 1 acts_upstream_of_or_within ISO (MGI:3615741|PMID:15356574) MGI PMID:15356574 MGI:3615741 NCBI chrNW_004936581:798,738...801,614 JBrowse link
G Vim vimentin involved_in ISO (PMID:21746880) UniProt PMID:21746880 NCBI chrNW_004936520:10,051,692...10,059,324 JBrowse link
G Ythdf1 YTH N6-methyladenosine RNA binding protein 1 involved_in ISO (PMID:32492408)
(MGI:6490006|PMID:32943573)
UniProt PMID:32492408 PMID:32943573 MGI:6490006 NCBI chrNW_004936514:10,587,877...10,603,373 JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein 2 involved_in ISO (PMID:32492408)
(MGI:6490006|PMID:32943573)
(PMID:24284625), (PMID:26046440)
UniProt PMID:24284625 PMID:26046440 PMID:32492408 PMID:32943573 MGI:6490006 NCBI chrNW_004936474:12,791,121...12,827,122 JBrowse link
G Ythdf3 YTH N6-methyladenosine RNA binding protein 3 involved_in ISO (PMID:32194978)
(MGI:6490006|PMID:32943573)
(PMID:32492408)
UniProt PMID:32194978 PMID:32492408 PMID:32943573 MGI:6490006 NCBI chrNW_004936496:10,323,338...10,362,150 JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in
acts_upstream_of_or_within
ISO (PMID:11719186), (PMID:15687258), (PMID:20702587), (PMID:9703499)
(MGI:3511379|PMID:15467755)
(MGI:5795825|PMID:15634918)
(MGI:5784976|PMID:22701344), (MGI:5795824|PMID:17288565)
(PMID:15187101), (PMID:15634918)
UniProt
MGI
PMID:9703499 PMID:11719186 PMID:15187101 PMID:15467755 PMID:15634918 PMID:15687258 PMID:17288565 PMID:20702587 PMID:22701344 MGI:3511379 MGI:5784976 MGI:5795824 MGI:5795825 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in
acts_upstream_of_or_within
ISO PMID:12748283
(PMID:15467755)
(PMID:15538381), (PMID:15687258), (PMID:18326031), (PMID:19179481), (PMID:20702587), (PMID:24700863), (PMID:25014217), (PMID:26542173)
(MGI:4818820|PMID:20622884), (MGI:5784967|PMID:24733888), (MGI:5784976|PMID:22701344)
(MGI:5784968|PMID:24700863)
PMID:11279239
(PMID:12198173), (PMID:25106868)
UniProt
MGI
PMID:11279239 PMID:12198173 PMID:12748283 PMID:15467755 PMID:15538381 PMID:15687258 PMID:18326031 PMID:19179481 PMID:20622884 PMID:20702587 PMID:22701344 PMID:24700863 PMID:24733888 PMID:25014217 PMID:25106868 PMID:26542173 MGI:4818820 MGI:5784967 MGI:5784968 MGI:5784976 RGD:11344945 RGD:11344953 NCBI chrNW_004936495:12,045,679...12,050,737 JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 involved_in
acts_upstream_of_or_within
ISO (PMID:25106868)
(MGI:4818820|PMID:20622884), (MGI:5784976|PMID:22701344)
(MGI:3511379|PMID:15467755)
UniProt
MGI
PMID:15467755 PMID:20622884 PMID:22701344 PMID:25106868 MGI:3511379 MGI:4818820 MGI:5784976 NCBI chrNW_004936508:8,617,185...8,620,823 JBrowse link
regulation of mRNA stability involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npm1 nucleophosmin 1 involved_in ISO (PMID:12080348) UniProt PMID:12080348 NCBI chrNW_004936609:3,712,628...3,725,635 JBrowse link
regulation of mRNA stability involved in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Igf2bp1 insulin like growth factor 2 mRNA binding protein 1 involved_in ISO (PMID:17101699) UniProt PMID:17101699 NCBI chrNW_004936490:12,430,343...12,468,794 JBrowse link
regulation of RNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlrp5 NLR family pyrin domain containing 5 acts_upstream_of_or_within ISO (MGI:1926689|PMID:11062459) MGI PMID:11062459 MGI:1926689 NCBI chrNW_004936562:1,069,745...1,092,383 JBrowse link
regulation of rRNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx49 DEAD-box helicase 49 involved_in ISO (PMID:29618122) CACAO PMID:29618122 NCBI chrNW_004936596:2,414,380...2,422,730 JBrowse link
ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt5 nudix hydrolase 5 involved_in ISO (PMID:18462755), (PMID:19699693), (PMID:21389046) UniProt PMID:18462755 PMID:19699693 PMID:21389046 NCBI chrNW_004936484:3,148,955...3,169,527 JBrowse link
RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc5 exosome component 5 acts_upstream_of_or_within ISO (MGI:5014448|PMID:21670248) MGI PMID:21670248 MGI:5014448 NCBI chrNW_004936661:3,790,283...3,799,602 JBrowse link
G Isg20 interferon stimulated exonuclease gene 20 involved_in ISO (PMID:11401564) UniProt PMID:11401564 NCBI chrNW_004936483:14,616,796...14,635,290 JBrowse link
G Mtrex Mtr4 exosome RNA helicase involved_in ISO (PMID:29906447) UniProt PMID:29906447 NCBI chrNW_004936480:12,357,637...12,458,728 JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:25578728) UniProt PMID:25578728 NCBI chrNW_004936524:6,429,735...6,465,035 JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18083836) UniProt PMID:18083836 NCBI chrNW_004936491:1,989,429...2,032,430 JBrowse link
G Rnaseh2a ribonuclease H2 subunit A involved_in ISO (PMID:21177858) UniProt PMID:21177858 NCBI chrNW_004936659:1,897,777...1,905,526 JBrowse link
G Rnaseh2b ribonuclease H2 subunit B involved_in ISO (PMID:21177858) UniProt PMID:21177858 NCBI chrNW_004936565:3,791,305...3,839,991 JBrowse link
G Rnaseh2c ribonuclease H2 subunit C involved_in ISO (PMID:21177858) UniProt PMID:21177858 NCBI chrNW_004936599:3,766,330...3,767,453 JBrowse link
G Rnaset2 ribonuclease T2 involved_in ISO (PMID:22735700) UniProt PMID:22735700 NCBI chrNW_004936489:16,540,558...16,555,669 JBrowse link
G Sidt2 SID1 transmembrane family member 2 involved_in ISO (MGI:5908462|PMID:28724756), (MGI:5908512|PMID:27046251) UniProt PMID:27046251 PMID:28724756 MGI:5908462 MGI:5908512 NCBI chrNW_004936542:2,426,937...2,443,721 JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in ISO (PMID:18678873) UniProt PMID:18678873 NCBI chrNW_004936521:9,237,081...9,264,441 JBrowse link
RNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dxo decapping exoribonuclease involved_in ISO (MGI:5488528|PMID:23523372) UniProt PMID:23523372 MGI:5488528 NCBI chrNW_004936727:1,576,823...1,579,158 JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) CACAO PMID:18951094 NCBI chrNW_004936564:1,646,469...1,768,879 JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B acts_upstream_of_or_within ISO (MGI:2152007|PMID:11588035) MGI PMID:11588035 MGI:2152007 NCBI chrNW_004936474:908,414...935,765 JBrowse link
G Zc3h18 zinc finger CCCH-type containing 18 involved_in ISO (PMID:28297668) FlyBase PMID:28297668 NCBI chrNW_004936641:1,053,650...1,104,664 JBrowse link
G Zfp36 ZFP36 ring finger protein acts_upstream_of_or_within ISO (MGI:2152007|PMID:11588035) MGI PMID:11588035 MGI:2152007 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
RNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source</