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ONTOLOGY REPORT - ANNOTATIONS


Term:membrane biogenesis
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Accession:GO:0044091 term browser browse the term
Definition:A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a membrane.



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membrane biogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLIP3 CAP-Gly domain containing linker protein 3 involved_in IMP (PMID:11854307) UniProt PMID:11854307 NCBI chr19:36,014,660...36,032,873
Ensembl chr19:36,014,660...36,033,343
JBrowse link
G EXOC4 exocyst complex component 4 ISO RGD PMID:16478790 RGD:2314419 NCBI chr 7:133,253,075...134,067,137
Ensembl chr 7:133,253,073...134,066,589
JBrowse link
G SERINC1 serine incorporator 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 6:122,443,351...122,471,807
Ensembl chr 6:122,443,351...122,471,807
JBrowse link
caveola assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAV1 caveolin 1 involved_in
acts_upstream_of_or_within
IGI
ISO
ISS
IMP
IEA
IBA
(PMID:25006397)
(MGI:3629009|PMID:12759260)
(MGI:2176684|PMID:11884617)
(PMID:12633858)
(PMID:21873635)
BHF-UCL
MGI
InterPro
GO_Central
PMID:11884617 PMID:12633858 PMID:12759260 PMID:21873635 PMID:25006397 GO_REF:0000002 GO_REF:0000024 MGI:2176684 MGI:3629009 NCBI chr 7:116,525,009...116,561,185
Ensembl chr 7:116,524,994...116,561,179
JBrowse link
G CAV2 caveolin 2 involved_in IDA
IBA
IMP
IEA
(PMID:12743374)
(PMID:21873635)
(PMID:12633858)
BHF-UCL
GO_Central
InterPro
PMID:12633858 PMID:12743374 PMID:21873635 GO_REF:0000002 NCBI chr 7:116,499,738...116,508,541
Ensembl chr 7:116,287,380...116,508,541
JBrowse link
G CAV3 caveolin 3 involved_in
acts_upstream_of_or_within
IBA
IDA
(PMID:21873635)
(PMID:18936328)
GO_Central
MGI
PMID:18936328 PMID:21873635 NCBI chr 3:8,733,802...8,746,758
Ensembl chr 3:8,733,802...8,841,808
JBrowse link
G EMP2 epithelial membrane protein 2 NOT|involved_in ISS UniProt GO_REF:0000024 NCBI chr16:10,528,422...10,580,598
Ensembl chr16:10,528,422...10,580,632
JBrowse link
G PACSIN2 protein kinase C and casein kinase substrate in neurons 2 involved_in IEA
IMP
(PMID:21610094) InterPro
UniProt
PMID:21610094 GO_REF:0000002 NCBI chr22:42,869,766...43,015,149
Ensembl chr22:42,835,412...43,015,149
JBrowse link
clathrin-coated pit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GAK cyclin G associated kinase involved_in IMP (PMID:16155256) ParkinsonsUK-UCL PMID:16155256 NCBI chr 4:849,276...932,330
Ensembl chr 4:849,276...932,373
JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein involved_in IDA (PMID:16262731) UniProt PMID:16262731 NCBI chr11:85,957,175...86,069,860
Ensembl chr11:85,957,175...86,069,882
JBrowse link
cornified envelope assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DMKN dermokine involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
(PMID:21873635)
(MGI:5603671|PMID:24794495)
GO_Central
MGI
InterPro
PMID:21873635 PMID:24794495 GO_REF:0000002 MGI:5603671 NCBI chr19:35,497,220...35,513,678
Ensembl chr19:35,497,220...35,513,658
JBrowse link
G PSAP prosaposin acts_upstream_of_or_within ISO (MGI:5607491|PMID:24872419) MGI PMID:24872419 MGI:5607491 NCBI chr10:71,816,298...71,851,251
Ensembl chr10:71,816,298...71,851,325
JBrowse link
G STX2 syntaxin 2 involved_in IDA (PMID:22226963) UniProt PMID:22226963 NCBI chr12:130,789,600...130,839,274
Ensembl chr12:130,789,600...130,839,266
JBrowse link
G STX4 syntaxin 4 involved_in IDA (PMID:22226963) UniProt PMID:22226963 NCBI chr16:31,033,095...31,040,168
Ensembl chr16:31,032,889...31,042,975
JBrowse link
G UGCG UDP-glucose ceramide glucosyltransferase involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:111,896,766...111,935,369
Ensembl chr 9:111,896,814...111,935,369
JBrowse link
membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANK3 ankyrin 3 involved_in ISS
IMP
(PMID:14757759), (PMID:17620337) BHF-UCL PMID:14757759 PMID:17620337 GO_REF:0000024 NCBI chr10:60,026,298...60,733,528
Ensembl chr10:60,026,298...60,733,490
JBrowse link
G SPTBN1 spectrin beta, non-erythrocytic 1 involved_in IMP (PMID:17620337) BHF-UCL PMID:17620337 NCBI chr 2:54,456,327...54,671,446
Ensembl chr 2:54,456,317...54,671,446
JBrowse link
G TLCD1 TLC domain containing 1 involved_in IBA
IMP
(PMID:21873635)
(PMID:30509349)
GO_Central
UniProt
PMID:21873635 PMID:30509349 NCBI chr17:28,724,024...28,727,930
Ensembl chr17:28,724,348...28,727,935
JBrowse link
G TLCD2 TLC domain containing 2 involved_in IMP
IBA
(PMID:30509349)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:30509349 NCBI chr17:1,702,816...1,710,377
Ensembl chr17:1,702,816...1,710,377
JBrowse link
membrane raft assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA2 annexin A2 involved_in IMP (PMID:23861394) UniProt PMID:23861394 NCBI chr15:60,347,151...60,398,025
Ensembl chr15:60,347,134...60,402,883
JBrowse link
G EMP2 epithelial membrane protein 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr16:10,528,422...10,580,598
Ensembl chr16:10,528,422...10,580,632
JBrowse link
G FLOT1 flotillin 1 involved_in IMP (PMID:25204797) UniProt PMID:25204797 NCBI chr 6:30,727,709...30,742,847
Ensembl chr 6:30,727,709...30,742,732
JBrowse link
G FLOT2 flotillin 2 involved_in IMP (PMID:25204797) UniProt PMID:25204797 NCBI chr17:28,879,339...28,897,733
Ensembl chr17:28,879,335...28,897,733
JBrowse link
G RFTN1 raftlin, lipid raft linker 1 involved_in IMP (PMID:12805216) UniProt PMID:12805216 NCBI chr 3:16,315,845...16,513,699
Ensembl chr 3:16,313,574...16,514,026
JBrowse link
G S100A10 S100 calcium binding protein A10 involved_in IDA (PMID:23861394) UniProt PMID:23861394 NCBI chr 1:151,982,915...151,993,859
Ensembl chr 1:151,982,915...151,993,859
JBrowse link
mitotic nuclear membrane reassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKLE2 ankyrin repeat and LEM domain containing 2 involved_in IMP (PMID:22770216) UniProt PMID:22770216 NCBI chr12:132,725,503...132,761,832
Ensembl chr12:132,725,503...132,761,832
JBrowse link
G RCC1 regulator of chromosome condensation 1 involved_in TAS Reactome Reactome:R-HSA-2995410 NCBI chr 1:28,506,043...28,538,989
Ensembl chr 1:28,505,943...28,539,300
JBrowse link
G REEP3 receptor accessory protein 3 involved_in IMP (PMID:23911198) UniProt PMID:23911198 NCBI chr10:63,521,353...63,625,128
Ensembl chr10:63,521,401...63,625,128
JBrowse link
G REEP4 receptor accessory protein 4 involved_in IMP (PMID:23911198) UniProt PMID:23911198 NCBI chr 8:22,138,020...22,141,907
Ensembl chr 8:22,138,020...22,141,951
JBrowse link
G SIRT2 sirtuin 2 involved_in TAS Reactome Reactome:R-HSA-2995410 NCBI chr19:38,878,555...38,899,733
Ensembl chr19:38,878,555...38,899,862
JBrowse link
G SPAST spastin involved_in TAS Reactome Reactome:R-HSA-2995410 NCBI chr 2:32,063,551...32,157,637
Ensembl chr 2:32,063,556...32,157,637
JBrowse link
G UBE2I ubiquitin conjugating enzyme E2 I involved_in TAS Reactome Reactome:R-HSA-2995410 NCBI chr16:1,309,152...1,327,017
Ensembl chr16:1,308,880...1,327,018
JBrowse link
G VPS4A vacuolar protein sorting 4 homolog A involved_in TAS Reactome Reactome:R-HSA-2995410 NCBI chr16:69,311,350...69,326,939
Ensembl chr16:69,311,350...69,326,939
JBrowse link
negative regulation of clathrin-coated pit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SYT11 synaptotagmin 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:155,859,502...155,885,199
Ensembl chr 1:155,859,567...155,885,199
JBrowse link
neurexin clustering involved in presynaptic membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NLGN1 neuroligin 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 3:173,395,929...174,294,372
Ensembl chr 3:173,396,284...174,286,644
JBrowse link
neuroligin clustering involved in postsynaptic membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDH2 cadherin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:27,932,878...28,177,130
Ensembl chr18:27,932,879...28,177,946
JBrowse link
G MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 involved_in ISO (MGI:4457945|PMID:20534458) BHF-UCL PMID:20534458 MGI:4457945 NCBI chr 7:78,017,055...79,453,667
Ensembl chr 7:78,017,055...79,453,667
JBrowse link
G NRXN1 neurexin 1 involved_in ISS
IEA
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 2:49,918,503...51,032,132
Ensembl chr 2:49,918,503...51,225,575
JBrowse link
G NRXN2 neurexin 2 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr11:64,606,174...64,723,197
Ensembl chr11:64,606,174...64,723,197
JBrowse link
nuclear membrane reassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHMP2A charged multivesicular body protein 2A involved_in IMP (PMID:26040712) UniProt PMID:26040712 NCBI chr19:58,551,566...58,555,624
Ensembl chr19:58,551,566...58,555,105
JBrowse link
G CHMP4B charged multivesicular body protein 4B involved_in IMP (PMID:26040712) UniProt PMID:26040712 NCBI chr20:33,811,348...33,854,366
Ensembl chr20:33,811,348...33,854,366
JBrowse link
G CHMP7 charged multivesicular body protein 7 involved_in TAS
IMP
(PMID:28242692)
(PMID:26040712)
ARUK-UCL
UniProt
PMID:26040712 PMID:28242692 NCBI chr 8:23,243,637...23,262,000
Ensembl chr 8:23,243,637...23,262,000
JBrowse link
G EMD emerin ISO RGD PMID:10569247 RGD:1342448 NCBI chr  X:154,379,236...154,381,523
Ensembl chr  X:154,379,273...154,381,574
JBrowse link
G NSFL1C NSFL1 cofactor involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:1,442,166...1,467,793
Ensembl chr20:1,442,162...1,473,842
JBrowse link
G SPAST spastin involved_in IMP (PMID:26040712) UniProt PMID:26040712 NCBI chr 2:32,063,551...32,157,637
Ensembl chr 2:32,063,556...32,157,637
JBrowse link
G UBXN2A UBX domain protein 2A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:23,927,172...24,004,909
Ensembl chr 2:23,927,285...24,004,909
JBrowse link
G UBXN2B UBX domain protein 2B involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:58,411,361...58,451,501
Ensembl chr 8:58,411,359...58,451,501
JBrowse link
G VPS4A vacuolar protein sorting 4 homolog A involved_in TAS (PMID:28242692) ARUK-UCL PMID:28242692 NCBI chr16:69,311,350...69,326,939
Ensembl chr16:69,311,350...69,326,939
JBrowse link
peroxisome membrane biogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PEX11A peroxisomal biogenesis factor 11 alpha involved_in IEA
ISO
Ensembl
RGD
PMID:9548716 GO_REF:0000107 RGD:633614 NCBI chr15:89,681,535...89,690,754
Ensembl chr15:89,677,764...89,690,783
JBrowse link
G PEX16 peroxisomal biogenesis factor 16 involved_in IMP (PMID:12223482), (PMID:9837814) UniProt PMID:9837814 PMID:12223482 NCBI chr11:45,909,663...45,917,877
Ensembl chr11:45,909,663...45,918,812
JBrowse link
G PEX19 peroxisomal biogenesis factor 19 involved_in IDA (PMID:10051604) UniProt PMID:10051604 NCBI chr 1:160,276,807...160,285,151
Ensembl chr 1:160,276,807...160,286,348
JBrowse link
G PEX3 peroxisomal biogenesis factor 3 involved_in IEA
ISO
Ensembl
RGD
PMID:10848631 GO_REF:0000107 RGD:633588 NCBI chr 6:143,450,805...143,490,616
Ensembl chr 6:143,450,805...143,490,616
JBrowse link
plasma membrane raft assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FLOT1 flotillin 1 involved_in IMP (PMID:21399631) UniProt PMID:21399631 NCBI chr 6:30,727,709...30,742,847
Ensembl chr 6:30,727,709...30,742,732
JBrowse link
postsynaptic membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEL carboxyl ester lipase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:133,061,981...133,071,861
Ensembl chr 9:133,061,981...133,071,861
JBrowse link
G EPHB2 EPH receptor B2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:22,710,770...22,921,500
Ensembl chr 1:22,710,839...22,921,500
JBrowse link
G LRP4 LDL receptor related protein 4 involved_in ISS UniProt GO_REF:0000024 NCBI chr11:46,854,715...46,918,550
Ensembl chr11:46,856,717...46,918,642
JBrowse link
G NLGN1 neuroligin 1 involved_in IBA
ISS
(PMID:21873635) GO_Central
BHF-UCL
PMID:21873635 GO_REF:0000024 NCBI chr 3:173,395,929...174,294,372
Ensembl chr 3:173,396,284...174,286,644
JBrowse link
G NLGN2 neuroligin 2 involved_in IBA
ISS
(PMID:21873635) GO_Central
BHF-UCL
PMID:21873635 GO_REF:0000024 NCBI chr17:7,405,492...7,419,860
Ensembl chr17:7,404,874...7,419,860
JBrowse link
G NLGN3 neuroligin 3 involved_in ISS
IBA
(PMID:21873635) BHF-UCL
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr  X:71,144,389...71,175,307
Ensembl chr  X:71,144,831...71,171,201
JBrowse link
G NLGN4X neuroligin 4 X-linked involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:5,890,042...6,228,878
Ensembl chr  X:5,840,637...6,228,867
JBrowse link
G NLGN4Y neuroligin 4 Y-linked involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  Y:14,522,616...14,845,654
Ensembl chr  Y:14,522,573...14,845,650
JBrowse link
G NRXN1 neurexin 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 2:49,918,503...51,032,132
Ensembl chr 2:49,918,503...51,225,575
JBrowse link
G NRXN2 neurexin 2 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr11:64,606,174...64,723,197
Ensembl chr11:64,606,174...64,723,197
JBrowse link
presynaptic membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEL carboxyl ester lipase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:133,061,981...133,071,861
Ensembl chr 9:133,061,981...133,071,861
JBrowse link
G IL1RAPL1 interleukin 1 receptor accessory protein like 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr  X:28,587,446...29,956,718
Ensembl chr  X:28,587,446...29,956,718
JBrowse link
G LRP4 LDL receptor related protein 4 involved_in ISS UniProt GO_REF:0000024 NCBI chr11:46,854,715...46,918,550
Ensembl chr11:46,856,717...46,918,642
JBrowse link
G NLGN1 neuroligin 1 involved_in IBA
ISS
(PMID:21873635) GO_Central
BHF-UCL
PMID:21873635 GO_REF:0000024 NCBI chr 3:173,395,929...174,294,372
Ensembl chr 3:173,396,284...174,286,644
JBrowse link
G NLGN2 neuroligin 2 involved_in ISS
IBA
(PMID:21873635) BHF-UCL
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr17:7,405,492...7,419,860
Ensembl chr17:7,404,874...7,419,860
JBrowse link
G NLGN3 neuroligin 3 involved_in IBA
ISS
(PMID:21873635) GO_Central
BHF-UCL
PMID:21873635 GO_REF:0000024 NCBI chr  X:71,144,389...71,175,307
Ensembl chr  X:71,144,831...71,171,201
JBrowse link
G NLGN4X neuroligin 4 X-linked involved_in IDA
IBA
(PMID:19726642)
(PMID:21873635)
BHF-UCL
GO_Central
PMID:19726642 PMID:21873635 NCBI chr  X:5,890,042...6,228,878
Ensembl chr  X:5,840,637...6,228,867
JBrowse link
G NLGN4Y neuroligin 4 Y-linked involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  Y:14,522,616...14,845,654
Ensembl chr  Y:14,522,573...14,845,650
JBrowse link
G NRXN1 neurexin 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 2:49,918,503...51,032,132
Ensembl chr 2:49,918,503...51,225,575
JBrowse link
G PTEN phosphatase and tensin homolog involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr10:87,863,625...87,971,930
Ensembl chr10:87,863,625...87,971,930
JBrowse link
G PTPRD protein tyrosine phosphatase receptor type D involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 9:8,314,246...10,613,002
Ensembl chr 9:8,314,246...10,613,002
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18539
    cellular process 17461
      cellular component organization or biogenesis 6721
        cellular component biogenesis 3357
          membrane biogenesis 59
            membrane assembly + 52
            membrane macromolecule biosynthetic process 0
            nuclear membrane biogenesis + 0
            peroxisome membrane biogenesis 4
            rhabdomere membrane biogenesis 0
paths to the root