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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of vacuole organization
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Accession:GO:0044088 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of a vacuole.
Synonyms:exact_synonym: regulation of vacuole organisation
 related_synonym: regulation of vacuole biogenesis


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regulation of vacuole organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtm1 X-linked myotubular myopathy gene 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr  X:70,254,373...70,359,019
Ensembl chr  X:70,254,373...70,359,297 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1, autophagy related acts_upstream_of_or_within IMP (PMID:27994061) MGI PMID:27994061 NCBI chr11:101,179,084...101,193,112
Ensembl chr11:101,176,778...101,193,112 		JBrowse link
G Ehmt2 euchromatic histone lysine N-methyltransferase 2 acts_upstream_of_or_within IMP (PMID:23918802) MGI PMID:23918802 NCBI chr17:35,117,427...35,133,049
Ensembl chr17:35,117,445...35,133,028 		JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 9:36,732,694...36,790,220
Ensembl chr 9:36,733,160...36,790,220 		JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr17:78,676,641...78,725,581
Ensembl chr17:78,676,641...78,725,581 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr15:91,556,994...91,700,327
Ensembl chr15:91,557,378...91,700,323 		JBrowse link
G Mtm1 X-linked myotubular myopathy gene 1 involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:23695157) GO_Central
MGI		 PMID:23695157 GO_REF:0000033 NCBI chr  X:70,254,373...70,359,019
Ensembl chr  X:70,254,373...70,359,297 		JBrowse link
G Nupr1 nuclear protein transcription regulator 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:126,222,418...126,224,642
Ensembl chr 7:126,222,421...126,230,033 		JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr11:69,886,592...69,890,837
Ensembl chr11:69,886,603...69,890,835 		JBrowse link
G Pink1 PTEN induced putative kinase 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:138,040,718...138,053,631
Ensembl chr 4:138,040,720...138,053,618 		JBrowse link
G Scfd1 Sec1 family domain containing 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr12:51,424,296...51,496,887
Ensembl chr12:51,424,293...51,496,884 		JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 3:97,808,543...97,829,634
Ensembl chr 3:97,808,506...97,830,592 		JBrowse link
G Smcr8 Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:60,668,351...60,679,113
Ensembl chr11:60,668,350...60,679,113 		JBrowse link
G Tmem39a transmembrane protein 39a involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr16:38,379,060...38,412,524
Ensembl chr16:38,379,060...38,412,524 		JBrowse link
negative regulation of lysosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1, autophagy related involved_in ISO RGD
MGI		 PMID:25561470 GO_REF:0000096 MGI:4417868 RGD:11561937 NCBI chr11:101,179,084...101,193,112
Ensembl chr11:101,176,778...101,193,112 		JBrowse link
G Flcn folliculin involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:59,682,234...59,706,138
Ensembl chr11:59,682,234...59,700,842 		JBrowse link
G Fnip1 folliculin interacting protein 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:54,328,071...54,409,067
Ensembl chr11:54,329,025...54,409,061 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:148,533,039...148,642,142
Ensembl chr 4:148,533,068...148,642,140 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr19:6,291,508...6,312,332
Ensembl chr19:6,291,698...6,312,365 		JBrowse link
G Becn1 beclin 1, autophagy related involved_in ISO RGD
MGI		 PMID:25561470 GO_REF:0000096 MGI:4417868 RGD:11561937 NCBI chr11:101,179,084...101,193,112
Ensembl chr11:101,176,778...101,193,112 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 3:108,362,995...108,444,064
Ensembl chr 3:108,363,010...108,443,852 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:32,815,227...32,851,666
Ensembl chr 2:32,815,228...32,851,626 		JBrowse link
G Moap1 modulator of apoptosis 1 involved_in IMP
ISO		 (MGI:6810697|PMID:33783314) UniProt
MGI		 PMID:33783314 GO_REF:0000119 MGI:4834177 MGI:6810697 NCBI chr12:102,706,089...102,709,920
Ensembl chr12:102,708,489...102,709,920 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase, type II, alpha involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:18,847,066...19,003,101
Ensembl chr 2:18,847,066...19,002,937 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase, type II, beta involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:97,605,983...97,635,530
Ensembl chr11:97,605,983...97,635,530 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase, type II, gamma involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:127,032,936...127,047,508
Ensembl chr10:127,032,936...127,047,454 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein subunit 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:127,796,492...127,871,612
Ensembl chr 1:127,796,510...127,871,605 		JBrowse link
G Rab3gap2 RAB3 GTPase activating protein subunit 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:184,936,287...185,018,953
Ensembl chr 1:184,936,314...185,018,956 		JBrowse link
G Ralb v-ral simian leukemia viral oncogene B involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:119,398,035...119,432,512
Ensembl chr 1:119,398,035...119,432,524 		JBrowse link
G Sh3glb1 SH3-domain GRB2-like B1 (endophilin) involved_in IMP
ISO		 (MGI:5634888|PMID:21068542) UniProt
MGI		 PMID:21068542 GO_REF:0000119 MGI:4834177 MGI:5634888 NCBI chr 3:144,389,426...144,426,186
Ensembl chr 3:144,389,439...144,426,096 		JBrowse link
G Snx18 sorting nexin 18 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:113,728,715...113,755,100
Ensembl chr13:113,728,715...113,755,100 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:59,805,137...59,904,740
Ensembl chr 4:59,805,840...59,904,737 		JBrowse link
G Snx4 sorting nexin 4 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr16:33,071,826...33,119,932
Ensembl chr16:33,071,812...33,120,639 		JBrowse link
G Snx7 sorting nexin 7 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 3:117,575,146...117,662,585
Ensembl chr 3:117,575,296...117,662,585 		JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:65,523,223...65,534,477
Ensembl chr 4:65,523,223...65,534,475 		JBrowse link
G Ulk1 unc-51 like kinase 1 involved_in ISO RGD
MGI		 PMID:23448468 GO_REF:0000096 MGI:4417868 RGD:13208863 NCBI chr 5:110,932,355...110,957,991
Ensembl chr 5:110,932,354...110,957,963 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr  X:7,588,212...7,594,439
Ensembl chr  X:7,580,572...7,594,445 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:109,464,347...109,502,215
Ensembl chr11:109,464,157...109,502,793 		JBrowse link
positive regulation of lysosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grn granulin involved_in IDA
ISO		 (MGI:5905514|PMID:28073925) UniProt
MGI		 PMID:28073925 GO_REF:0000119 MGI:4834177 MGI:5905514 NCBI chr11:102,321,333...102,327,635
Ensembl chr11:102,321,141...102,327,874 		JBrowse link
G Igtp interferon gamma induced GTPase involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:58,090,382...58,098,418
Ensembl chr11:58,090,382...58,098,417 		JBrowse link
G Irgm1 immunity-related GTPase family M member 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:48,756,072...48,762,247
Ensembl chr11:48,752,795...48,762,510 		JBrowse link
G Irgm2 immunity-related GTPase family M member 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:58,105,803...58,113,609
Ensembl chr11:58,090,444...58,113,608 		JBrowse link
G Mcoln1 mucolipin 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 8:3,550,458...3,565,232
Ensembl chr 8:3,550,457...3,565,232 		JBrowse link
G Ppp3cb protein phosphatase 3, catalytic subunit, beta isoform involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr14:20,549,432...20,596,641
Ensembl chr14:20,549,432...20,596,641 		JBrowse link
positive regulation of vacuole organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 involved_in ISO (PMID:25139904) AgBase PMID:25139904 NCBI chr 9:69,360,978...69,399,074
Ensembl chr 9:69,360,902...69,399,077 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 3:108,362,995...108,444,064
Ensembl chr 3:108,363,010...108,443,852 		JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C9orf72 C9orf72, member of C9orf72-SMCR8 complex involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:35,191,285...35,226,153
Ensembl chr 4:35,191,285...35,226,175 		JBrowse link
G Chek2 checkpoint kinase 2 involved_in ISO (PMID:37943659) UniProt PMID:37943659 NCBI chr 5:110,987,668...111,022,006
Ensembl chr 5:110,987,845...111,022,011 		JBrowse link
G Efnb1 ephrin B1 acts_upstream_of_positive_effect ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr  X:98,179,667...98,192,628
Ensembl chr  X:98,179,736...98,192,597 		JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_positive_effect ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:136,374,850...136,563,637
Ensembl chr 4:136,374,850...136,563,299 		JBrowse link
G Ift20 intraflagellar transport 20 involved_in IMP (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chr11:78,427,187...78,432,558
Ensembl chr11:78,427,187...78,432,563 		JBrowse link
G Ift88 intraflagellar transport 88 involved_in IMP (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chr14:57,661,519...57,755,393
Ensembl chr14:57,661,519...57,755,393 		JBrowse link
G Mtmr3 myotubularin related protein 3 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:4,430,867...4,544,863
Ensembl chr11:4,430,868...4,544,863 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:148,533,039...148,642,142
Ensembl chr 4:148,533,068...148,642,140 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE type zinc finger containing involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:65,225,796...65,317,855
Ensembl chr 1:65,225,842...65,317,854 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr19:5,149,235...5,157,024
Ensembl chr19:5,149,233...5,157,100 		JBrowse link
G Rnf186 ring finger protein 186 acts_upstream_of_positive_effect ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:138,694,430...138,695,676
Ensembl chr 4:138,694,423...138,695,676 		JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within IMP (PMID:23093945) MGI PMID:23093945 NCBI chr17:34,820,073...34,822,535
Ensembl chr17:34,820,065...34,822,664 		JBrowse link
G Tbc1d12 TBC1D12: TBC1 domain family, member 12 involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:38,825,035...38,908,103
Ensembl chr19:38,825,023...38,908,367 		JBrowse link
G Tbc1d14 TBC1 domain family, member 14 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 5:36,647,948...36,743,611
Ensembl chr 5:36,647,948...36,750,620 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr  X:152,281,228...152,284,558
Ensembl chr  X:152,281,223...152,284,566 		JBrowse link
regulation of lysosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grn granulin acts_upstream_of_or_within IMP (PMID:28728022) MGI PMID:28728022 NCBI chr11:102,321,333...102,327,635
Ensembl chr11:102,321,141...102,327,874 		JBrowse link
G Laptm4b lysosomal-associated protein transmembrane 4B involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr15:34,238,279...34,284,448
Ensembl chr15:34,238,174...34,284,448 		JBrowse link
G Tmem106b transmembrane protein 106B acts_upstream_of_or_within IMP (PMID:28728022) MGI PMID:28728022 NCBI chr 6:13,069,758...13,089,268
Ensembl chr 6:13,069,758...13,089,268 		JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within IMP (PMID:23160154) MGI PMID:23160154 NCBI chr 9:108,887,000...108,888,791
Ensembl chr 9:108,887,001...108,888,802 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    regulation of biological process 12727
      regulation of cellular process 12145
        regulation of cellular component organization 2769
          regulation of organelle organization 1271
            regulation of vacuole organization 59
              positive regulation of vacuole organization + 27
              regulation of autophagosome assembly + 47
              regulation of lysosome organization + 13
              regulation of vacuole fusion, non-autophagic + 0
Path 2
Term Annotations click to browse term
  biological_process 28573
    cellular process 17545
      cellular component organization or biogenesis 6954
        cellular component organization 6731
          organelle organization 3699
            vacuole organization 240
              regulation of vacuole organization 59
                positive regulation of vacuole organization + 27
                regulation of autophagosome assembly + 47
                regulation of lysosome organization + 13
                regulation of vacuole fusion, non-autophagic + 0
paths to the root