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ONTOLOGY REPORT - ANNOTATIONS

Term:dicarboxylic acid biosynthetic process
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Accession:GO:0043650 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of dicarboxylic acids, any organic acid containing two carboxyl (-COOH) groups.
Synonyms:exact_synonym: dicarboxylate biosynthesis;   dicarboxylate biosynthetic process;   dicarboxylic acid anabolism;   dicarboxylic acid biosynthesis;   dicarboxylic acid formation;   dicarboxylic acid synthesis


show annotations for term's descendants           Sort by:
10-formyltetrahydrofolate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (PMID:1881876)
(PMID:23704330)		 RGD PMID:1881876 PMID:23704330 NCBI chr 6:100,713,510...100,781,013
Ensembl chr 6:94,977,862...95,045,372 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like involved_in ISO
IEA
IBA		 (PMID:12937168)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:12937168 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:42,849,424...43,038,313
Ensembl chr 1:40,444,008...40,632,905 		JBrowse link
aspartate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:4193185)		 GO_Central
Ensembl
RGD		 PMID:4193185 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:252,306,541...252,337,622
Ensembl chr 1:242,357,306...242,380,633 		JBrowse link
G Got1l1 glutamic-oxaloacetic transaminase 1-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:64,860,308...64,873,656
Ensembl chr16:64,860,704...64,866,162 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 acts_upstream_of_or_within ISO (PMID:4193185) RGD PMID:4193185 NCBI chr19:9,180,428...9,206,113
Ensembl chr19:9,174,311...9,199,994 		JBrowse link
glutamate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gls glutaminase involved_in IEA
ISO
IBA
ISS		 GO_REF:0000107
(PMID:22228304)
GO_REF:0000033
GO_REF:0000024
(PMID:16899818), (PMID:22049910)		 Ensembl
RGD
GO_Central
UniProt		 PMID:16899818 PMID:22049910 PMID:22228304 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:56,836,584...56,908,861
Ensembl chr 9:49,344,781...49,416,900 		JBrowse link
G Gls2 glutaminase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:1,201,757...1,218,014
Ensembl chr 7:617,288...633,426 		JBrowse link
G Glud1 glutamate dehydrogenase 1 involved_in ISO (PMID:11032875) RGD PMID:11032875 NCBI chr16:9,646,569...9,680,215
Ensembl chr16:9,640,312...9,673,957 		JBrowse link
G Slc25a12 solute carrier family 25 member 12 IMP RGD PMID:19764902 RGD:13628741 NCBI chr 3:76,504,868...76,599,536
Ensembl chr 3:56,097,269...56,192,100 		JBrowse link
L-glutamate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 IDA RGD PMID:16489927 RGD:13504861 NCBI chr 1:252,306,541...252,337,622
Ensembl chr 1:242,357,306...242,380,633 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 IDA RGD PMID:16489927 RGD:13504861 NCBI chr19:9,180,428...9,206,113
Ensembl chr19:9,174,311...9,199,994 		JBrowse link
negative regulation of quinolinate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acmsd aminocarboxymuconate semialdehyde decarboxylase involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:12140278)
GO_REF:0000104
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:12140278 GO_REF:0000024 GO_REF:0000104 GO_REF:0000107 NCBI chr13:41,752,894...41,798,427
Ensembl chr13:39,200,314...39,245,209 		JBrowse link
quinolinate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Haao 3-hydroxyanthranilate 3,4-dioxygenase involved_in ISO
IEA		 (PMID:28792876)
GO_REF:0000104		 RGD
UniProt		 PMID:28792876 GO_REF:0000104 NCBI chr 6:16,598,325...16,617,590
Ensembl chr 6:10,845,771...10,864,877 		JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO MGI:1861934|MGI:1861935 (PMID:16697652) RGD PMID:16697652 NCBI chr14:80,070,456...80,219,668
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 involved_in ISO
IEA		 (PMID:2419335)
GO_REF:0000107		 RGD
Ensembl		 PMID:2419335 GO_REF:0000107 NCBI chr16:74,133,259...74,145,328
Ensembl chr16:67,430,578...67,442,730 		JBrowse link
G Kmo kynurenine 3-monooxygenase involved_in IEA GO_REF:0000104
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr13:90,089,340...90,121,108
Ensembl chr13:87,557,286...87,588,881 		JBrowse link
G Kynu kynureninase involved_in ISO
IEA		 (PMID:9291104)
GO_REF:0000104		 RGD
UniProt		 PMID:9291104 GO_REF:0000104 NCBI chr 3:48,188,286...48,338,996
Ensembl chr 3:27,778,772...27,929,488 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      metabolic process 12180
        biosynthetic process 8654
          small molecule biosynthetic process 662
            organic acid biosynthetic process 353
              carboxylic acid biosynthetic process 349
                dicarboxylic acid biosynthetic process 15
                  10-formyltetrahydrofolate biosynthetic process 2
                  5,6,7,8-tetrahydromethanopterin biosynthetic process 0
                  Kdo2-lipid A biosynthetic process 0
                  actinorhodin biosynthetic process 0
                  aldaric acid biosynthetic process + 0
                  aspartate biosynthetic process 3
                  chorismate biosynthetic process 0
                  diaminopimelate biosynthetic process 0
                  dihydrofolate biosynthetic process 0
                  folic acid biosynthetic process 0
                  gibberellin 12 biosynthetic process 0
                  glutamate biosynthetic process + 6
                  glutamate catabolic process to oxaloacetate 0
                  oxalate biosynthetic process 0
                  phytochromobilin biosynthetic process 0
                  prephenate(2-) biosynthetic process 0
                  quinolinate biosynthetic process + 6
                  tyrosine catabolic process to fumarate 0
Path 2
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      metabolic process 12180
        small molecule metabolic process 1928
          organic acid metabolic process 1048
            oxoacid metabolic process 1026
              carboxylic acid metabolic process 1011
                dicarboxylic acid metabolic process 106
                  dicarboxylic acid biosynthetic process 15
                    10-formyltetrahydrofolate biosynthetic process 2
                    5,6,7,8-tetrahydromethanopterin biosynthetic process 0
                    Kdo2-lipid A biosynthetic process 0
                    actinorhodin biosynthetic process 0
                    aldaric acid biosynthetic process + 0
                    aspartate biosynthetic process 3
                    chorismate biosynthetic process 0
                    diaminopimelate biosynthetic process 0
                    dihydrofolate biosynthetic process 0
                    folic acid biosynthetic process 0
                    gibberellin 12 biosynthetic process 0
                    glutamate biosynthetic process + 6
                    glutamate catabolic process to oxaloacetate 0
                    oxalate biosynthetic process 0
                    phytochromobilin biosynthetic process 0
                    prephenate(2-) biosynthetic process 0
                    quinolinate biosynthetic process + 6
                    tyrosine catabolic process to fumarate 0
paths to the root