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ONTOLOGY REPORT - ANNOTATIONS


Term:dicarboxylic acid catabolic process
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Accession:GO:0043649 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of dicarboxylic acids, any organic acid containing two carboxyl (-COOH) groups.
Synonyms:exact_synonym: dicarboxylate catabolic process;   dicarboxylate catabolism;   dicarboxylic acid breakdown;   dicarboxylic acid catabolism;   dicarboxylic acid degradation


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dicarboxylic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot4 acyl-CoA thioesterase 4 ISO (PMID:16141203) RGD PMID:16141203 NCBI chr 6:107,517,668...107,522,952
Ensembl chr 6:107,517,668...107,522,952
JBrowse link
G Acot8 acyl-CoA thioesterase 8 IEA
ISO
GO_REF:0000107
(PMID:16141203)
Ensembl
RGD
PMID:16141203 GO_REF:0000107 NCBI chr 3:161,260,837...161,272,495
Ensembl chr 3:161,259,735...161,272,460
JBrowse link
10-formyltetrahydrofolate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1l1 aldehyde dehydrogenase 1 family, member L1 IEA GO_REF:0000002
GO_REF:0000104
InterPro
UniProt
GO_REF:0000002, GO_REF:0000104 NCBI chr 4:123,516,553...123,564,067
Ensembl chr 4:123,516,788...123,557,501
JBrowse link
G Aldh1l2 aldehyde dehydrogenase 1 family, member L2 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 7:26,375,866...26,425,838
Ensembl chr 7:26,375,866...26,425,108
JBrowse link
aspartate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddo D-aspartate oxidase ISO
IBA
(PMID:9163533)
PMID:21873635
RGD PMID:9163533, PMID:21873635 RGD:13792537 NCBI chr20:48,739,812...48,758,958
Ensembl chr20:48,739,639...48,758,905
JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 ISO (PMID:2241899) RGD PMID:2241899 NCBI chr 1:263,246,248...263,269,762
Ensembl chr 1:263,246,248...263,269,762
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 ISO
IBA
(PMID:2567216)
PMID:21873635
RGD PMID:2567216, PMID:21873635 RGD:13792537 NCBI chr19:9,587,637...9,613,323
Ensembl chr19:9,587,653...9,613,340
JBrowse link
folic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfs methenyltetrahydrofolate synthetase ISO (PMID:12764149) RGD PMID:12764149 NCBI chr 8:96,564,877...96,614,386
Ensembl chr 8:96,564,877...96,614,348
JBrowse link
G Pm20d2 peptidase M20 domain containing 2 NOT IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:48,416,005...48,437,054
Ensembl chr 5:48,420,302...48,436,531
JBrowse link
glutamate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Glud1 glutamate dehydrogenase 1 TAS
IBA
ISO
PMID:21873635
(PMID:11032875), (PMID:6121377)
RGD PMID:6121377, PMID:11032875, PMID:12684230, PMID:21873635 RGD:1601355, RGD:13792537 NCBI chr16:10,661,486...10,695,557
Ensembl chr16:10,662,021...10,695,557
JBrowse link
glutamate catabolic process to 2-oxoglutarate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 ISO
IDA
(MGI:MGI:53641|PMID:4193185) RGD PMID:4193185, PMID:16489927 MGI:MGI:53641, RGD:13504861 NCBI chr 1:263,246,248...263,269,762
Ensembl chr 1:263,246,248...263,269,762
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 ISO
IDA
(MGI:MGI:53641|PMID:4193185) RGD PMID:4193185, PMID:16489927 MGI:MGI:53641, RGD:13504861 NCBI chr19:9,587,637...9,613,323
Ensembl chr19:9,587,653...9,613,340
JBrowse link
glutamate catabolic process to aspartate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 ISO (MGI:MGI:53641|PMID:4193185) RGD PMID:4193185 MGI:MGI:53641 NCBI chr 1:263,246,248...263,269,762
Ensembl chr 1:263,246,248...263,269,762
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 ISO (MGI:MGI:53641|PMID:4193185) RGD PMID:4193185 MGI:MGI:53641 NCBI chr19:9,587,637...9,613,323
Ensembl chr19:9,587,653...9,613,340
JBrowse link
glutamate catabolic process via 2-oxoglutarate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adhfe1 alcohol dehydrogenase, iron containing, 1 ISS
ISO
GO_REF:0000024
(PMID:16435184)
UniProt
RGD
PMID:16435184 GO_REF:0000024 NCBI chr 5:9,403,194...9,429,783
Ensembl chr 5:9,403,196...9,429,859
JBrowse link
glutamate decarboxylation to succinate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gad2 glutamate decarboxylase 2 IDA RGD PMID:8999827 RGD:1625237 NCBI chr17:89,171,576...89,234,770
Ensembl chr17:89,171,250...89,238,040
JBrowse link
malonate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsf3 acyl-CoA synthetase family member 3 ISO (PMID:21642549), (PMID:21846720) RGD PMID:21642549, PMID:21846720 NCBI chr19:55,594,801...55,635,312
Ensembl chr19:55,594,831...55,635,122
JBrowse link
quinolinate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Qprt quinolinate phosphoribosyltransferase IBA
ISO
PMID:21873635
(PMID:24038671), (PMID:3409840), (PMID:9473669)
RGD PMID:3409840, PMID:9473669, PMID:24038671, PMID:21873635 RGD:13792537 NCBI chr 1:198,544,262...198,559,556
Ensembl chr 1:198,544,262...198,559,568
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      small molecule metabolic process 1874
        organic acid metabolic process 1095
          organic acid catabolic process 245
            carboxylic acid catabolic process 245
              dicarboxylic acid catabolic process 14
                10-formyltetrahydrofolate catabolic process 2
                5,6,7,8-tetrahydromethanopterin catabolic process 0
                actinorhodin catabolic process 0
                aldaric acid catabolic process + 0
                asparagine biosynthetic process from oxaloacetate 0
                aspartate catabolic process + 3
                folic acid catabolic process 2
                glutamate catabolic process + 5
                malonate catabolic process 1
                octopine catabolic process + 0
                oxalate catabolic process 0
                phthalate catabolic process 0
                prephenate(2-) catabolic process 0
                quinolinate catabolic process 1
Path 2
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      cellular metabolic process 11085
        organic acid metabolic process 1095
          oxoacid metabolic process 1066
            carboxylic acid metabolic process 1009
              dicarboxylic acid metabolic process 103
                dicarboxylic acid catabolic process 14
                  10-formyltetrahydrofolate catabolic process 2
                  5,6,7,8-tetrahydromethanopterin catabolic process 0
                  actinorhodin catabolic process 0
                  aldaric acid catabolic process + 0
                  asparagine biosynthetic process from oxaloacetate 0
                  aspartate catabolic process + 3
                  folic acid catabolic process 2
                  glutamate catabolic process + 5
                  malonate catabolic process 1
                  octopine catabolic process + 0
                  oxalate catabolic process 0
                  phthalate catabolic process 0
                  prephenate(2-) catabolic process 0
                  quinolinate catabolic process 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.