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ONTOLOGY REPORT - ANNOTATIONS


Term:polyadenylation-dependent ncRNA catabolic process
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Accession:GO:0043634 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a noncoding RNA (ncRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target ncRNA.
Synonyms:related_synonym: poly(A)-dependent ncRNA catabolic process


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ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent4b terminal nucleotidyltransferase 4B ISO (PMID:26950371) RGD PMID:26950371 NCBI chr19:19,771,289...19,834,759
Ensembl chr19:19,771,677...19,832,812
JBrowse link
nuclear polyadenylation-dependent antisense transcript catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
nuclear polyadenylation-dependent CUT catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
nuclear polyadenylation-dependent rRNA catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 ISO
IBA
(PMID:16455498)
PMID:21873635
RGD PMID:16455498, PMID:21873635 RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
G Exosc2 exosome component 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:10,151,734...10,161,997
Ensembl chr 3:10,151,284...10,161,989
JBrowse link
G Exosc3 exosome component 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,866,498...60,871,734
Ensembl chr 5:60,868,502...60,871,705
JBrowse link
G Exosc7 exosome component 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:132,204,628...132,229,968
Ensembl chr 8:132,204,604...132,229,969
JBrowse link
G Exosc8 exosome component 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:143,925,643...143,932,240
Ensembl chr 2:143,925,546...143,931,940
JBrowse link
G Exosc9 exosome component 9 ISO
IBA
(PMID:16455498)
PMID:21873635
RGD PMID:16455498, PMID:21873635 RGD:13792537 NCBI chr 2:123,264,679...123,275,623
Ensembl chr 2:123,264,694...123,294,880
JBrowse link
nuclear polyadenylation-dependent snoRNA catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
nuclear polyadenylation-dependent snRNA catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
nuclear polyadenylation-dependent tRNA catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
G Exosc2 exosome component 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:10,151,734...10,161,997
Ensembl chr 3:10,151,284...10,161,989
JBrowse link
G Exosc3 exosome component 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,866,498...60,871,734
Ensembl chr 5:60,868,502...60,871,705
JBrowse link
G Exosc7 exosome component 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:132,204,628...132,229,968
Ensembl chr 8:132,204,604...132,229,969
JBrowse link
G Exosc8 exosome component 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:143,925,643...143,932,240
Ensembl chr 2:143,925,546...143,931,940
JBrowse link
G Exosc9 exosome component 9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:123,264,679...123,275,623
Ensembl chr 2:123,264,694...123,294,880
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      primary metabolic process 10901
        nucleobase-containing compound metabolic process 5483
          nucleobase-containing compound catabolic process 373
            RNA catabolic process 266
              ncRNA catabolic process 37
                polyadenylation-dependent ncRNA catabolic process 7
                  cytoplasmic polyadenylation-dependent rRNA catabolic process 0
                  ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process + 1
                  nuclear polyadenylation-dependent ncRNA catabolic process + 6
Path 2
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      cellular metabolic process 11064
        cellular aromatic compound metabolic process 5708
          nucleobase-containing compound metabolic process 5483
            nucleic acid metabolic process 4980
              RNA metabolic process 4470
                RNA catabolic process 266
                  ncRNA catabolic process 37
                    polyadenylation-dependent ncRNA catabolic process 7
                      cytoplasmic polyadenylation-dependent rRNA catabolic process 0
                      ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process + 1
                      nuclear polyadenylation-dependent ncRNA catabolic process + 6
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.