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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA polyadenylation
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Accession:GO:0043631 term browser browse the term
Definition:The enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule.



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RNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Papola poly (A) polymerase alpha acts_upstream_of_or_within ISO (MGI:5004778|PMID:18084034) RGD PMID:18084034 MGI:5004778 NCBI chr 6:124,682,015...124,734,706
Ensembl chr 6:124,682,105...124,734,468
JBrowse link
G Papolg poly(A) polymerase gamma involved_in ISO (PMID:11287430), (PMID:11463842) RGD PMID:11287430 PMID:11463842 NCBI chr14:97,827,712...97,861,024
Ensembl chr14:97,827,712...97,861,024
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18083836) RGD PMID:18083836 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696
JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:15070731)
UniProt
RGD
PMID:15070731 GO_REF:0000024 NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099
JBrowse link
G Tent4a terminal nucleotidyltransferase 4A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:33,766,121...33,799,433
Ensembl chr 1:33,765,672...33,799,433
JBrowse link
mitochondrial mRNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18083837) RGD PMID:18083837 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696
JBrowse link
mRNA alternative polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO
IBA
(PMID:20695905), (PMID:23187700), (PMID:29276085)
PMID:21873635
RGD PMID:20695905 PMID:23187700 PMID:29276085 PMID:21873635 RGD:13792537 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122
JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in ISO
IBA
ISS
(PMID:29276085)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:29276085 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:207,167,690...207,191,865
Ensembl chr 1:207,167,859...207,191,905
JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISS
ISO
GO_REF:0000024
(PMID:17098938), (PMID:20695905), (PMID:23187700), (PMID:29276085)
UniProt
RGD
PMID:17098938 PMID:20695905 PMID:23187700 PMID:29276085 GO_REF:0000024 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682
JBrowse link
G Virma vir like m6A methyltransferase associated involved_in ISO (PMID:29507755) RGD PMID:29507755 NCBI chr 5:24,961,208...25,024,660
Ensembl chr 5:24,960,778...25,023,341
JBrowse link
G Ythdc1 YTH domain containing 1 acts_upstream_of_or_within ISO (MGI:6161521|PMID:29799838) RGD PMID:29799838 MGI:6161521 NCBI chr14:21,185,438...21,215,934
Ensembl chr14:21,185,440...21,216,028
JBrowse link
mRNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcyl1 adenosylhomocysteinase-like 1 involved_in
acts_upstream_of_or_within
ISO (PMID:19224921)
(MGI:3848108|PMID:19224921)
RGD PMID:19224921 MGI:3848108 NCBI chr 2:195,294,149...195,328,586
Ensembl chr 2:195,294,153...195,345,815
JBrowse link
G Aplp1 amyloid beta precursor like protein 1 acts_upstream_of_or_within ISO (MGI:3610697|PMID:16314516) RGD PMID:16314516 MGI:3610697 NCBI chr 1:85,696,880...85,707,215
Ensembl chr 1:85,696,882...85,707,155
JBrowse link
G App amyloid beta precursor protein involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:3610697|PMID:16314516)
UniProt
RGD
PMID:16314516 GO_REF:0000024 MGI:3610697 NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561
JBrowse link
G Cdc73 cell division cycle 73 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:21329879)
Ensembl
UniProt
RGD
PMID:21329879 GO_REF:0000024 GO_REF:0000107 NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656
JBrowse link
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421
JBrowse link
G Cpsf1 cleavage and polyadenylation specific factor 1 involved_in ISO
IBA
(PMID:7590244)
PMID:21873635
RGD PMID:7590244 PMID:21873635 RGD:13792537 NCBI chr 7:108,319,429...108,330,023
Ensembl chr 7:108,319,434...108,329,934
JBrowse link
G Cpsf2 cleavage and polyadenylation specific factor 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:121,123,941...121,152,756
Ensembl chr 6:121,120,569...121,151,921
JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128
JBrowse link
G Cstf2 cleavage stimulation factor subunit 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:97,253,559...97,279,476
Ensembl chr  X:97,253,586...97,279,476
JBrowse link
G Fip1l1 factor interacting with PAPOLA and CPSF1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:33,615,210...33,675,742
Ensembl chr14:33,617,720...33,675,708
JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in ISS
ISO
GO_REF:0000024
(PMID:21329879)
UniProt
RGD
PMID:21329879 GO_REF:0000024 NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983
JBrowse link
G Mtpap mitochondrial poly(A) polymerase involved_in ISO
IBA
(PMID:21292163)
PMID:21873635
RGD PMID:21292163 PMID:21873635 RGD:13792537 NCBI chr17:53,320,739...53,341,500
Ensembl chr17:53,320,741...53,341,538
JBrowse link
G Nudt21 nudix hydrolase 21 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682
JBrowse link
G Pabpc1l poly(A) binding protein, cytoplasmic 1-like acts_upstream_of_or_within ISO MGI:5437740 (MGI:5437387|PMID:22621333) RGD PMID:22621333 MGI:5437387 NCBI chr 3:152,692,825...152,725,997
Ensembl chr 3:152,693,700...152,725,997
JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISS
ISO
GO_REF:0000024
(PMID:21329879)
UniProt
RGD
PMID:21329879 GO_REF:0000024 NCBI chr 1:83,683,654...83,689,233
Ensembl chr 1:83,668,813...83,689,237
JBrowse link
G Papola poly (A) polymerase alpha involved_in IBA
ISO
PMID:21873635
(PMID:19224921), (PMID:7590244)
RGD PMID:7590244 PMID:19224921 PMID:21873635 RGD:13792537 NCBI chr 6:124,682,015...124,734,706
Ensembl chr 6:124,682,105...124,734,468
JBrowse link
G Papolg poly(A) polymerase gamma involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:97,827,712...97,861,024
Ensembl chr14:97,827,712...97,861,024
JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:146,694,045...146,724,030
Ensembl chr 1:146,697,646...146,724,124
JBrowse link
G Scaf8 SR-related CTD-associated factor 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977
JBrowse link
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:20861839)
UniProt
RGD
PMID:20861839 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:166,312,267...166,343,432
Ensembl chr 5:166,313,650...166,343,429
JBrowse link
G Sympk symplekin scaffold protein involved_in IBA
ISO
PMID:21873635
(PMID:20861839)
RGD PMID:20861839 PMID:21873635 RGD:13792537 NCBI chr 1:78,672,326...78,700,684
Ensembl chr 1:78,672,378...78,700,684
JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099
JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:28383716) RGD PMID:28383716 NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537
JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:18288197), (PMID:21102410)
UniProt
RGD
PMID:18288197 PMID:21102410 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:205,848,691...205,859,767
Ensembl chr 1:205,848,772...205,859,764
JBrowse link
G Wdr33 WD repeat domain 33 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:23,432,233...23,535,460
Ensembl chr18:23,432,191...23,468,597
JBrowse link
ncRNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:25049417) RGD PMID:25049417 NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537
JBrowse link
G Zcchc7 zinc finger CCHC-type containing 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:58,992,558...59,173,308
Ensembl chr 5:58,993,290...59,173,300
JBrowse link
ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:26950371) RGD PMID:26950371 NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537
JBrowse link
negative regulation of mRNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnt1 cyclin T1 involved_in ISO (PMID:19575011) RGD PMID:19575011 NCBI chr 7:129,687,146...129,718,082
Ensembl chr 7:129,691,209...129,717,871
JBrowse link
G Cdk9 cyclin-dependent kinase 9 involved_in ISO (PMID:19575011) RGD PMID:19575011 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in ISO (PMID:19575011) RGD PMID:19575011 NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303
JBrowse link
G Nelfe negative elongation factor complex member E involved_in ISO (PMID:19575011) RGD PMID:19575011 NCBI chr20:3,976,512...3,982,389
Ensembl chr20:3,976,518...3,982,355
JBrowse link
G Rnf20 ring finger protein 20 involved_in ISO (PMID:19575011) RGD PMID:19575011 NCBI chr 5:63,976,063...64,001,754
Ensembl chr 5:63,976,045...64,001,754
JBrowse link
G Rnf40 ring finger protein 40 involved_in ISO (PMID:19575011) RGD PMID:19575011 NCBI chr 1:182,202,475...182,217,899
Ensembl chr 1:182,202,600...182,217,241
JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in ISO (PMID:19575011) RGD PMID:19575011 NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892
JBrowse link
G Zc3h14 zinc finger CCCH type containing 14 involved_in IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 6:118,006,420...118,044,480
Ensembl chr 6:118,006,458...118,044,105
JBrowse link
positive regulation of mRNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 involved_in ISO (PMID:28383716) RGD PMID:28383716 NCBI chr 1:135,300,048...135,407,688
Ensembl chr 1:135,300,461...135,409,760
JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (MGI:5300629|PMID:22153079) RGD PMID:22153079 MGI:5300629 NCBI chr 1:234,749,138...234,931,219
Ensembl chr 1:234,751,733...234,931,560
JBrowse link
G Hsf1 heat shock transcription factor 1 involved_in ISO (PMID:14707147) RGD PMID:14707147 NCBI chr 7:108,196,040...108,223,011
Ensembl chr 7:108,196,056...108,223,011
JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISS
ISO
GO_REF:0000024
(PMID:15937220)
UniProt
RGD
PMID:15937220 GO_REF:0000024 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682
JBrowse link
regulation of mRNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncbp1 nuclear cap binding protein subunit 1 NOT|involved_in ISS
ISO
GO_REF:0000024
(PMID:9342333)
UniProt
RGD
PMID:9342333 GO_REF:0000024 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 NOT|involved_in ISO (PMID:9342333) RGD PMID:9342333 NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885
JBrowse link
G Snrpa small nuclear ribonucleoprotein polypeptide A IMP RGD PMID:10521474 RGD:10755561 NCBI chr 1:82,481,770...82,490,540
Ensembl chr 1:82,481,770...82,490,538
JBrowse link
G Zc3h3 zinc finger CCCH type containing 3 involved_in ISO (PMID:19364924) RGD PMID:19364924 NCBI chr 7:107,440,694...107,525,451
Ensembl chr 7:107,440,694...107,525,451
JBrowse link
sno(s)RNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:22442037) RGD PMID:22442037 NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18877
    metabolic process 11591
      organic substance metabolic process 11152
        macromolecule metabolic process 9583
          nucleic acid metabolic process 4890
            RNA metabolic process 4323
              RNA polyadenylation 47
                RNA polyadenylation at postsynapse 0
                mRNA polyadenylation + 45
                ncRNA polyadenylation + 2
                polyadenylation of viral mRNA by polymerase stuttering 0
Path 2
Term Annotations click to browse term
  biological_process 18877
    metabolic process 11591
      cellular metabolic process 9831
        cellular aromatic compound metabolic process 5651
          nucleobase-containing compound metabolic process 5422
            nucleic acid metabolic process 4890
              RNA metabolic process 4323
                RNA polyadenylation 47
                  RNA polyadenylation at postsynapse 0
                  mRNA polyadenylation + 45
                  ncRNA polyadenylation + 2
                  polyadenylation of viral mRNA by polymerase stuttering 0
paths to the root