ONTOLOGY REPORT - ANNOTATIONS |
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Term: | RNA polyadenylation |
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Accession: | GO:0043631
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browse the term
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Definition: | The enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule. |
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Papola |
poly (A) polymerase alpha |
acts_upstream_of_or_within |
ISO |
(MGI:5004778|PMID:18084034) |
RGD |
PMID:18084034 |
MGI:5004778 |
NCBI chr 6:124,682,015...124,734,706
Ensembl chr 6:124,682,105...124,734,468
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Papolg |
poly(A) polymerase gamma |
involved_in |
ISO |
(PMID:11287430), (PMID:11463842) |
RGD |
PMID:11287430 PMID:11463842 |
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NCBI chr14:97,827,712...97,861,024
Ensembl chr14:97,827,712...97,861,024
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Pnpt1 |
polyribonucleotide nucleotidyltransferase 1 |
involved_in |
ISO |
(PMID:18083836) |
RGD |
PMID:18083836 |
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NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696
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Tent2 |
terminal nucleotidyltransferase 2 |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:15070731) |
UniProt RGD |
PMID:15070731 |
GO_REF:0000024 |
NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099
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Tent4a |
terminal nucleotidyltransferase 4A |
involved_in |
IEA |
GO_REF:0000002 |
InterPro |
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GO_REF:0000002 |
NCBI chr 1:33,766,121...33,799,433
Ensembl chr 1:33,765,672...33,799,433
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Pnpt1 |
polyribonucleotide nucleotidyltransferase 1 |
involved_in |
ISO |
(PMID:18083837) |
RGD |
PMID:18083837 |
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NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696
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Cpsf6 |
cleavage and polyadenylation specific factor 6 |
involved_in |
ISO IBA |
(PMID:20695905), (PMID:23187700), (PMID:29276085) PMID:21873635 |
RGD |
PMID:20695905 PMID:23187700 PMID:29276085 PMID:21873635 |
RGD:13792537 |
NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122
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Cpsf7 |
cleavage and polyadenylation specific factor 7 |
involved_in |
ISO IBA ISS |
(PMID:29276085) PMID:21873635 GO_REF:0000024 |
RGD UniProt |
PMID:29276085 PMID:21873635 |
GO_REF:0000024, RGD:13792537 |
NCBI chr 1:207,167,690...207,191,865
Ensembl chr 1:207,167,859...207,191,905
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Nudt21 |
nudix hydrolase 21 |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:17098938), (PMID:20695905), (PMID:23187700), (PMID:29276085) |
UniProt RGD |
PMID:17098938 PMID:20695905 PMID:23187700 PMID:29276085 |
GO_REF:0000024 |
NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682
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Virma |
vir like m6A methyltransferase associated |
involved_in |
ISO |
(PMID:29507755) |
RGD |
PMID:29507755 |
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NCBI chr 5:24,961,208...25,024,660
Ensembl chr 5:24,960,778...25,023,341
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Ythdc1 |
YTH domain containing 1 |
acts_upstream_of_or_within |
ISO |
(MGI:6161521|PMID:29799838) |
RGD |
PMID:29799838 |
MGI:6161521 |
NCBI chr14:21,185,438...21,215,934
Ensembl chr14:21,185,440...21,216,028
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Ahcyl1 |
adenosylhomocysteinase-like 1 |
involved_in acts_upstream_of_or_within |
ISO |
(PMID:19224921) (MGI:3848108|PMID:19224921) |
RGD |
PMID:19224921 |
MGI:3848108 |
NCBI chr 2:195,294,149...195,328,586
Ensembl chr 2:195,294,153...195,345,815
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Aplp1 |
amyloid beta precursor like protein 1 |
acts_upstream_of_or_within |
ISO |
(MGI:3610697|PMID:16314516) |
RGD |
PMID:16314516 |
MGI:3610697 |
NCBI chr 1:85,696,880...85,707,215
Ensembl chr 1:85,696,882...85,707,155
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App |
amyloid beta precursor protein |
involved_in acts_upstream_of_or_within |
ISS ISO |
GO_REF:0000024 (MGI:3610697|PMID:16314516) |
UniProt RGD |
PMID:16314516 |
GO_REF:0000024 MGI:3610697 |
NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561
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Cdc73 |
cell division cycle 73 |
involved_in |
IEA ISS ISO |
GO_REF:0000107 GO_REF:0000024 (PMID:21329879) |
Ensembl UniProt RGD |
PMID:21329879 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656
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Clp1 |
cleavage factor polyribonucleotide kinase subunit 1 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421
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Cpsf1 |
cleavage and polyadenylation specific factor 1 |
involved_in |
ISO IBA |
(PMID:7590244) PMID:21873635 |
RGD |
PMID:7590244 PMID:21873635 |
RGD:13792537 |
NCBI chr 7:108,319,429...108,330,023
Ensembl chr 7:108,319,434...108,329,934
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Cpsf2 |
cleavage and polyadenylation specific factor 2 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 6:121,123,941...121,152,756
Ensembl chr 6:121,120,569...121,151,921
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Cpsf3 |
cleavage and polyadenylation specific factor 3 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128
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Cstf2 |
cleavage stimulation factor subunit 2 |
involved_in |
IEA |
GO_REF:0000002 |
InterPro |
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GO_REF:0000002 |
NCBI chr X:97,253,559...97,279,476
Ensembl chr X:97,253,586...97,279,476
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Fip1l1 |
factor interacting with PAPOLA and CPSF1 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr14:33,615,210...33,675,742
Ensembl chr14:33,617,720...33,675,708
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Leo1 |
LEO1 homolog, Paf1/RNA polymerase II complex component |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:21329879) |
UniProt RGD |
PMID:21329879 |
GO_REF:0000024 |
NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983
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Mtpap |
mitochondrial poly(A) polymerase |
involved_in |
ISO IBA |
(PMID:21292163) PMID:21873635 |
RGD |
PMID:21292163 PMID:21873635 |
RGD:13792537 |
NCBI chr17:53,320,739...53,341,500
Ensembl chr17:53,320,741...53,341,538
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Nudt21 |
nudix hydrolase 21 |
involved_in |
IEA |
GO_REF:0000002 |
InterPro |
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GO_REF:0000002 |
NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682
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Pabpc1l |
poly(A) binding protein, cytoplasmic 1-like |
acts_upstream_of_or_within |
ISO |
MGI:5437740 (MGI:5437387|PMID:22621333) |
RGD |
PMID:22621333 |
MGI:5437387 |
NCBI chr 3:152,692,825...152,725,997
Ensembl chr 3:152,693,700...152,725,997
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Paf1 |
PAF1 homolog, Paf1/RNA polymerase II complex component |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:21329879) |
UniProt RGD |
PMID:21329879 |
GO_REF:0000024 |
NCBI chr 1:83,683,654...83,689,233
Ensembl chr 1:83,668,813...83,689,237
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Papola |
poly (A) polymerase alpha |
involved_in |
IBA ISO |
PMID:21873635 (PMID:19224921), (PMID:7590244) |
RGD |
PMID:7590244 PMID:19224921 PMID:21873635 |
RGD:13792537 |
NCBI chr 6:124,682,015...124,734,706
Ensembl chr 6:124,682,105...124,734,468
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Papolg |
poly(A) polymerase gamma |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr14:97,827,712...97,861,024
Ensembl chr14:97,827,712...97,861,024
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Pcf11 |
PCF11 cleavage and polyadenylation factor subunit |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 1:146,694,045...146,724,030
Ensembl chr 1:146,697,646...146,724,124
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Scaf8 |
SR-related CTD-associated factor 8 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977
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Ssu72 |
SSU72 homolog, RNA polymerase II CTD phosphatase |
involved_in |
IBA ISS ISO |
PMID:21873635 GO_REF:0000024 (PMID:20861839) |
UniProt RGD |
PMID:20861839 PMID:21873635 |
GO_REF:0000024, RGD:13792537 |
NCBI chr 5:166,312,267...166,343,432
Ensembl chr 5:166,313,650...166,343,429
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Sympk |
symplekin scaffold protein |
involved_in |
IBA ISO |
PMID:21873635 (PMID:20861839) |
RGD |
PMID:20861839 PMID:21873635 |
RGD:13792537 |
NCBI chr 1:78,672,326...78,700,684
Ensembl chr 1:78,672,378...78,700,684
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Tent2 |
terminal nucleotidyltransferase 2 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099
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Tent4b |
terminal nucleotidyltransferase 4B |
involved_in |
ISO |
(PMID:28383716) |
RGD |
PMID:28383716 |
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NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537
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Tut1 |
terminal uridylyl transferase 1, U6 snRNA-specific |
involved_in |
ISS IBA ISO |
GO_REF:0000024 PMID:21873635 (PMID:18288197), (PMID:21102410) |
UniProt RGD |
PMID:18288197 PMID:21102410 PMID:21873635 |
GO_REF:0000024, RGD:13792537 |
NCBI chr 1:205,848,691...205,859,767
Ensembl chr 1:205,848,772...205,859,764
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Wdr33 |
WD repeat domain 33 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr18:23,432,233...23,535,460
Ensembl chr18:23,432,191...23,468,597
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Tent4b |
terminal nucleotidyltransferase 4B |
involved_in |
ISO |
(PMID:25049417) |
RGD |
PMID:25049417 |
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NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537
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Zcchc7 |
zinc finger CCHC-type containing 7 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 5:58,992,558...59,173,308
Ensembl chr 5:58,993,290...59,173,300
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Tent4b |
terminal nucleotidyltransferase 4B |
involved_in |
ISO |
(PMID:26950371) |
RGD |
PMID:26950371 |
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NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537
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Ccnt1 |
cyclin T1 |
involved_in |
ISO |
(PMID:19575011) |
RGD |
PMID:19575011 |
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NCBI chr 7:129,687,146...129,718,082
Ensembl chr 7:129,691,209...129,717,871
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Cdk9 |
cyclin-dependent kinase 9 |
involved_in |
ISO |
(PMID:19575011) |
RGD |
PMID:19575011 |
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NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410
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Ctr9 |
CTR9 homolog, Paf1/RNA polymerase II complex component |
involved_in |
ISO |
(PMID:19575011) |
RGD |
PMID:19575011 |
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NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303
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Nelfe |
negative elongation factor complex member E |
involved_in |
ISO |
(PMID:19575011) |
RGD |
PMID:19575011 |
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NCBI chr20:3,976,512...3,982,389
Ensembl chr20:3,976,518...3,982,355
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Rnf20 |
ring finger protein 20 |
involved_in |
ISO |
(PMID:19575011) |
RGD |
PMID:19575011 |
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NCBI chr 5:63,976,063...64,001,754
Ensembl chr 5:63,976,045...64,001,754
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Rnf40 |
ring finger protein 40 |
involved_in |
ISO |
(PMID:19575011) |
RGD |
PMID:19575011 |
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NCBI chr 1:182,202,475...182,217,899
Ensembl chr 1:182,202,600...182,217,241
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Supt5h |
SPT5 homolog, DSIF elongation factor subunit |
involved_in |
ISO |
(PMID:19575011) |
RGD |
PMID:19575011 |
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NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892
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Zc3h14 |
zinc finger CCCH type containing 14 |
involved_in |
IEA IBA |
GO_REF:0000002 PMID:21873635 |
InterPro |
PMID:21873635 |
GO_REF:0000002, RGD:13792537 |
NCBI chr 6:118,006,420...118,044,480
Ensembl chr 6:118,006,458...118,044,105
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Cpeb1 |
cytoplasmic polyadenylation element binding protein 1 |
involved_in |
ISO |
(PMID:28383716) |
RGD |
PMID:28383716 |
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NCBI chr 1:135,300,048...135,407,688
Ensembl chr 1:135,300,461...135,409,760
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Cpeb3 |
cytoplasmic polyadenylation element binding protein 3 |
involved_in |
ISO |
(MGI:5300629|PMID:22153079) |
RGD |
PMID:22153079 |
MGI:5300629 |
NCBI chr 1:234,749,138...234,931,219
Ensembl chr 1:234,751,733...234,931,560
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Hsf1 |
heat shock transcription factor 1 |
involved_in |
ISO |
(PMID:14707147) |
RGD |
PMID:14707147 |
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NCBI chr 7:108,196,040...108,223,011
Ensembl chr 7:108,196,056...108,223,011
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Nudt21 |
nudix hydrolase 21 |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:15937220) |
UniProt RGD |
PMID:15937220 |
GO_REF:0000024 |
NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682
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Ncbp1 |
nuclear cap binding protein subunit 1 |
NOT|involved_in |
ISS ISO |
GO_REF:0000024 (PMID:9342333) |
UniProt RGD |
PMID:9342333 |
GO_REF:0000024 |
NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089
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Ncbp2 |
nuclear cap binding protein subunit 2 |
NOT|involved_in |
ISO |
(PMID:9342333) |
RGD |
PMID:9342333 |
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NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885
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Snrpa |
small nuclear ribonucleoprotein polypeptide A |
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IMP |
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RGD |
PMID:10521474 |
RGD:10755561 |
NCBI chr 1:82,481,770...82,490,540
Ensembl chr 1:82,481,770...82,490,538
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Zc3h3 |
zinc finger CCCH type containing 3 |
involved_in |
ISO |
(PMID:19364924) |
RGD |
PMID:19364924 |
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NCBI chr 7:107,440,694...107,525,451
Ensembl chr 7:107,440,694...107,525,451
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Tent4b |
terminal nucleotidyltransferase 4B |
involved_in |
ISO |
(PMID:22442037) |
RGD |
PMID:22442037 |
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NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537
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Term paths to the root
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