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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of DNA-templated transcription in response to stress
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Accession:GO:0043620 term browser browse the term
Definition:Modulation of the frequency, rate or extent of transcription from a DNA template as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
Synonyms:exact_synonym: regulation of DNA-dependent transcription in response to stress


show annotations for term's descendants           Sort by:
regulation of DNA-templated transcription in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rela RELA proto-oncogene, NF-kB subunit involved_in ISO (PMID:26649771) RGD PMID:26649771 NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484 		JBrowse link
G Rgs14 regulator of G-protein signaling 14 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5284798|PMID:15520006)		 UniProt
RGD		 PMID:15520006 GO_REF:0000024 MGI:5284798 NCBI chr17:9,248,982...9,263,104
Ensembl chr17:9,249,019...9,263,104 		JBrowse link
G Tcim transcriptional and immune response regulator involved_in ISO (PMID:17603013) RGD PMID:17603013 NCBI chr16:67,595,762...67,597,055
Ensembl chr16:67,593,410...67,597,581 		JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jun Jun proto-oncogene, AP-1 transcription factor subunit involved_in ISO (PMID:21113145) RGD PMID:21113145 NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656 		JBrowse link
G Nck1 NCK adaptor protein 1 involved_in ISO (PMID:16835242)
UniProtKB:O55033 (MGI:5613475|PMID:16835242)		 RGD PMID:16835242 MGI:5613475 NCBI chr 8:101,018,610...101,079,237
Ensembl chr 8:101,018,702...101,079,300 		JBrowse link
G Nck2 NCK adaptor protein 2 involved_in ISO UniProtKB:Q99M51 (MGI:5613475|PMID:16835242) RGD PMID:16835242 MGI:5613475 NCBI chr 9:45,713,979...45,840,330
Ensembl chr 9:45,714,883...45,840,307 		JBrowse link
G Ppp1r15a protein phosphatase 1, regulatory subunit 15A involved_in ISO (MGI:5605960|PMID:11381086) RGD PMID:11381086 MGI:5605960 NCBI chr 1:96,000,053...96,003,128
Ensembl chr 1:96,000,058...96,003,171 		JBrowse link
G Tmbim6 transmembrane BAX inhibitor motif containing 6 involved_in ISO (MGI:3840374|PMID:19328063) RGD PMID:19328063 MGI:3840374 NCBI chr 7:130,512,428...130,543,637
Ensembl chr 7:130,527,316...130,543,633 		JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in ISO (PMID:22735262) RGD PMID:22735262 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Hif1an hypoxia inducible factor 1 subunit alpha inhibitor involved_in ISO (PMID:11641274) UniProt PMID:11641274 NCBI chr 1:243,419,175...243,440,464
Ensembl chr 1:243,419,194...243,434,327 		JBrowse link
G Sirt2 sirtuin 2 involved_in ISO
ISS		 (PMID:24681946)
GO_REF:0000024		 RGD
UniProt		 PMID:24681946 GO_REF:0000024 NCBI chr 1:84,053,883...84,076,975
Ensembl chr 1:84,052,903...84,076,975 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor involved_in ISO (PMID:11641274) RGD PMID:11641274 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to oxidative stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir21 microRNA 21 IDA Akap8, Bard1 RGD PMID:30680008 RGD:152025267 NCBI chr10:71,405,257...71,405,348
Ensembl chr10:71,405,257...71,405,348 		JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag3 BAG cochaperone 3 involved_in ISO (PMID:26159920) RGD PMID:26159920 NCBI chr 1:183,103,038...183,126,862
Ensembl chr 1:183,102,871...183,126,858 		JBrowse link
G Dnajb1 DnaJ heat shock protein family (Hsp40) member B1 involved_in ISO (PMID:9499401) UniProt PMID:9499401 NCBI chr19:24,522,717...24,526,458
Ensembl chr19:24,522,717...24,526,458 		JBrowse link
G Hspa1a heat shock protein family A (Hsp70) member 1A involved_in ISO (PMID:9499401) UniProt PMID:9499401 NCBI chr20:3,855,104...3,859,148
Ensembl chr20:3,856,006...3,873,240 		JBrowse link
G Hspa1b heat shock protein family A (Hsp70) member 1B involved_in ISO (PMID:9499401) UniProt PMID:9499401 NCBI chr20:3,870,765...3,873,221 JBrowse link
G Nfe2l1 NFE2 like bZIP transcription factor 1 involved_in ISO (MGI:6101031|PMID:29149604) RGD PMID:29149604 MGI:6101031 NCBI chr10:81,796,055...81,812,926
Ensembl chr10:81,800,366...81,832,318 		JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to cold term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ces1d carboxylesterase 1D acts_upstream_of_or_within ISO (MGI:6306193|PMID:30862682) RGD PMID:30862682 MGI:6306193 NCBI chr19:13,873,490...13,912,035
Ensembl chr19:13,796,623...13,912,035 		JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma acts_upstream_of_or_within ISO (MGI:6306193|PMID:30862682) RGD PMID:30862682 MGI:6306193 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468 		JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf3 activating transcription factor 3 involved_in ISO (PMID:24939851) RGD PMID:24939851 NCBI chr13:102,751,278...102,800,520
Ensembl chr13:102,751,321...102,764,631 		JBrowse link
G Atf4 activating transcription factor 4 involved_in ISO (PMID:12871976), (PMID:21113145)
(MGI:5433837|PMID:21113145), (MGI:5613480|PMID:12871976)		 RGD PMID:12871976 PMID:21113145 MGI:5433837 MGI:5613480 NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446 		JBrowse link
G Atf6 activating transcription factor 6 involved_in ISO (PMID:11163209), (PMID:11256944), (PMID:16469704) RGD PMID:11163209 PMID:11256944 PMID:16469704 NCBI chr13:82,927,579...83,106,381
Ensembl chr13:82,930,034...83,107,177 		JBrowse link
G Atf6b activating transcription factor 6 beta involved_in ISO (PMID:11256944) RGD PMID:11256944 NCBI chr20:4,090,921...4,098,920
Ensembl chr20:4,090,921...4,098,894 		JBrowse link
G Cebpb CCAAT/enhancer binding protein beta involved_in ISO (PMID:15775988) RGD PMID:15775988 NCBI chr 3:156,398,035...156,399,466
Ensembl chr 3:156,397,052...156,399,473 		JBrowse link
G Creb3l1 cAMP responsive element binding protein 3-like 1 involved_in IMP
ISO		 PMID:15665855
(MGI:5616321|PMID:15665855)		 RGD PMID:15665855 PMID:15665855 MGI:5616321, RGD:1558627 NCBI chr 3:77,952,589...77,993,513
Ensembl chr 3:77,952,540...77,993,456 		JBrowse link
G Creb3l3 cAMP responsive element binding protein 3-like 3 involved_in ISO (PMID:16469704)
(MGI:5616319|PMID:16469704)		 RGD PMID:16469704 MGI:5616319 NCBI chr 7:8,622,614...8,631,053
Ensembl chr 7:8,622,614...8,631,048 		JBrowse link
G Ddit3 DNA-damage inducible transcript 3 involved_in IBA
ISO
IDA		 PMID:21873635
(MGI:3525819|PMID:15601821)
PMID:8657121
UniProtKB:P17676 (PMID:15322075), (PMID:15775988), (PMID:22761832), (PMID:24939851)		 RGD PMID:15322075 PMID:15601821 PMID:15775988 PMID:22761832 PMID:24939851 More... MGI:3525819, RGD:13792537, RGD:1599740 NCBI chr 7:63,115,645...63,121,203
Ensembl chr 7:63,116,380...63,121,201 		JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 involved_in ISO (MGI:3722921|PMID:14729979) RGD PMID:14729979 MGI:3722921 NCBI chr 4:102,805,495...102,866,914
Ensembl chr 4:102,805,510...102,866,911 		JBrowse link
G Mbtps2 membrane-bound transcription factor peptidase, site 2 involved_in ISO
IBA		 UniProtKB:O54862 (PMID:11163209)
PMID:21873635		 RGD PMID:11163209 PMID:21873635 RGD:13792537 NCBI chr  X:37,410,914...37,461,130
Ensembl chr  X:37,410,811...37,464,430 		JBrowse link
G Tp53 tumor protein p53 involved_in ISO (MGI:5621265|PMID:16407291) RGD PMID:16407291 MGI:5621265 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Yy2 YY2 transcription factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:37,438,425...37,442,047
Ensembl chr  X:37,410,811...37,464,430 		JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to heat stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsf1 heat shock transcription factor 1 involved_in ISO (PMID:10747973), (PMID:12659875), (PMID:12665592), (PMID:15016915), (PMID:25963659), (PMID:26754925), (PMID:7760831), (PMID:9499401) UniProt PMID:7760831 PMID:9499401 PMID:10747973 PMID:12659875 PMID:12665592 More... NCBI chr 7:108,196,040...108,223,011
Ensembl chr 7:108,196,056...108,223,011 		JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:19652095), (PMID:22735262), (PMID:24681946)		 UniProt
Ensembl
RGD		 PMID:19652095 PMID:22735262 PMID:24681946 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 involved_in ISO (PMID:24844779) RGD PMID:24844779 NCBI chr 3:60,594,239...60,621,785
Ensembl chr 3:60,594,242...60,621,737 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region involved_in ISO (PMID:23303788) RGD PMID:23303788 NCBI chr14:57,338,493...57,523,330
Ensembl chr14:57,338,507...57,523,353 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (MGI:4867601|PMID:20935145) RGD PMID:20935145 MGI:4867601 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Vegfa vascular endothelial growth factor A involved_in ISO
IEA		 (PMID:19652095)
GO_REF:0000107		 RGD
Ensembl		 PMID:19652095 GO_REF:0000107 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641 		JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf4 activating transcription factor 4 involved_in ISO
IMP		 (PMID:21113145)
PMID:23392669		 RGD PMID:21113145 PMID:23392669 RGD:10047168 NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446 		JBrowse link
G Chd6 chromodomain helicase DNA binding protein 6 involved_in ISO (PMID:16314513) UniProt PMID:16314513 NCBI chr 3:149,596,509...149,757,765
Ensembl chr 3:149,596,509...149,757,755 		JBrowse link
G Mt3 metallothionein 3 involved_in ISO (PMID:18554677) UniProt PMID:18554677 NCBI chr19:10,848,754...10,850,158
Ensembl chr19:10,848,755...10,850,158 		JBrowse link
G Sesn2 sestrin 2 involved_in ISO (PMID:23274085) UniProt PMID:23274085 NCBI chr 5:144,702,287...144,721,241
Ensembl chr 5:144,701,530...144,721,260 		JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Klf2 KLF transcription factor 2 involved_in ISO (PMID:23043106) RGD PMID:23043106 NCBI chr16:17,521,773...17,523,723
Ensembl chr16:17,514,552...17,523,944 		JBrowse link
G Mapk7 mitogen-activated protein kinase 7 involved_in ISO
IEA		 (PMID:23043106)
GO_REF:0000107		 RGD
Ensembl		 PMID:23043106 GO_REF:0000107 NCBI chr10:46,170,264...46,176,262
Ensembl chr10:46,170,167...46,176,267 		JBrowse link
G Muc1 mucin 1, cell surface associated involved_in ISO (PMID:15710329) RGD PMID:15710329 NCBI chr 2:174,635,559...174,640,738
Ensembl chr 2:174,635,995...174,640,733 		JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 involved_in ISO (PMID:23043106) RGD PMID:23043106 NCBI chr 3:60,594,239...60,621,785
Ensembl chr 3:60,594,242...60,621,737 		JBrowse link
G Tp53 tumor protein p53 involved_in ISO (PMID:30089260)
(MGI:5883206|PMID:22262176)		 RGD PMID:22262176 PMID:30089260 MGI:5883206 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bach1 BTB domain and CNC homolog 1 involved_in ISO (PMID:12511571) UniProt PMID:12511571 NCBI chr11:26,939,429...26,974,876
Ensembl chr11:26,939,480...26,972,447 		JBrowse link
G Egr1 early growth response 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:3847400|PMID:18323529)		 Ensembl
RGD		 PMID:18323529 GO_REF:0000107 MGI:3847400 NCBI chr18:26,463,333...26,465,531
Ensembl chr18:26,462,981...26,466,766 		JBrowse link
G Stox1 storkhead box 1 involved_in ISO (PMID:24738702) RGD PMID:24738702 NCBI chr20:30,598,656...30,666,371
Ensembl chr20:30,598,168...30,666,939 		JBrowse link
regulation of transcription from RNA polymerase II promoter in response to oxidative stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd2 ankyrin repeat domain 2 acts_upstream_of_or_within ISO (PMID:24434510) RGD PMID:24434510 NCBI chr 1:240,847,111...240,856,563
Ensembl chr 1:240,847,072...240,856,566 		JBrowse link
G Arnt aryl hydrocarbon receptor nuclear translocator involved_in IEA
ISO		 GO_REF:0000107
(PMID:8089148)		 Ensembl
RGD		 PMID:8089148 GO_REF:0000107 NCBI chr 2:182,997,731...183,056,584
Ensembl chr 2:182,997,736...183,056,580 		JBrowse link
G Epas1 endothelial PAS domain protein 1 involved_in
NOT|acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:106918 (MGI:2667513|PMID:12832481)
MGI:3710344 (MGI:2681387|PMID:14608355), (MGI:3703197|PMID:17284606)		 Ensembl
RGD		 PMID:12832481 PMID:14608355 PMID:17284606 GO_REF:0000107 MGI:2667513 MGI:2681387 MGI:3703197 NCBI chr 6:7,790,236...7,871,246
Ensembl chr 6:7,790,647...7,871,228 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IMP
IEA
ISO		 GO_REF:0000107
MGI:2385358 (MGI:2667513|PMID:12832481)
(PMID:8089148), (PMID:8387214)		 Ensembl
RGD		 PMID:8089148 PMID:8387214 PMID:12832481 PMID:18614764 GO_REF:0000107 MGI:2667513, RGD:2301848 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hmox1 heme oxygenase 1 involved_in IDA PMID:17430897 BHF-UCL PMID:17430897 RGD:8553479 NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079 		JBrowse link
G Sin3a SIN3 transcription regulator family member A IDA RGD PMID:18945670 RGD:2306468 NCBI chr 8:57,481,539...57,536,195
Ensembl chr 8:57,481,573...57,536,192 		JBrowse link
regulation of transcription from RNA polymerase II promoter in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Muc1 mucin 1, cell surface associated involved_in ISO (PMID:15710329) RGD PMID:15710329 NCBI chr 2:174,635,559...174,640,738
Ensembl chr 2:174,635,995...174,640,733 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19748
    response to stimulus 10461
      response to stress 4174
        cellular response to stress 2123
          regulation of DNA-templated transcription in response to stress 51
            regulation of transcription from RNA polymerase II promoter in response to stress + 48
Path 2
Term Annotations click to browse term
  biological_process 19748
    metabolic process 12047
      cellular metabolic process 9535
        cellular aromatic compound metabolic process 5843
          nucleobase-containing compound metabolic process 5616
            nucleic acid metabolic process 5130
              RNA metabolic process 4556
                RNA biosynthetic process 3500
                  nucleic acid-templated transcription 3464
                    DNA-templated transcription 3462
                      regulation of DNA-templated transcription 3312
                        regulation of DNA-templated transcription in response to stress 51
                          regulation of transcription from RNA polymerase II promoter in response to stress + 48
paths to the root